View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0633_low_10 (Length: 427)
Name: NF0633_low_10
Description: NF0633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0633_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 4765182 - 4765536
Alignment:
| Q |
1 |
aaaattcattgaaagagtcaacgttcgttacaatttataatttgttgttcagttattggttagcaatgacgtttaactgtaaatcacagtttcgcattag |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4765182 |
aaaattcattgaaagagtcaacgttcgttacaaattataatttgttgttcagttattggttagcaatgacgtttaactgtaaatcacagtttcgcattag |
4765281 |
T |
|
| Q |
101 |
acatacatcgatgttgtgtatcaactattaagtacctcatttataaatctaaccatataaataatgttttacaaacagtgtgaatccataatatgctata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4765282 |
acatacatcgatgttgtgtatcaactattaagtacctcatttataaatctaaccacataaataatgttttacaaacagtgtgaatccataatatggtata |
4765381 |
T |
|
| Q |
201 |
gcaaaaagtgagttatggaatgtcagaaaaaatattcttaatgaagagaaacaacattttaggtagggaatatacatctaacacatgacaacctttgagt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4765382 |
gcaaaaagtgagttatggaatgtcagaaaaaatattcttaatgaagagaaaaaacattttaggtagggaatatacatctaacacatgacaacctttgagt |
4765481 |
T |
|
| Q |
301 |
tgtcagggttgttattgaggtacatatgacaccatttatgcttctggtttatttc |
355 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4765482 |
tgtcagggttgttattgaggtacatatgacaccatttatgcttctggtttatttc |
4765536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 8935312 - 8935413
Alignment:
| Q |
27 |
gttacaatttataatttgttgt--tcagttattggttagcaatgacgtttaactgtaaatcacagtttcgcattagacatacatcgatgttgtgtatcaa |
124 |
Q |
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||||||||||||||| |||||| ||| |||||| ||||||||| |||||| ||||||| |||||| |||||| |||| ||| |||| ||||||||| |
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| T |
8935312 |
gttacaatttataatgtgttgtgttcatttattgagcagcaatgacatttaacagtaaatcgtagtttcacattaggcatatatcaatgtcgtgtatcaa |
8935411 |
T |
|
| Q |
125 |
ct |
126 |
Q |
| |
|
|| |
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|
| T |
8935412 |
ct |
8935413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 152
Target Start/End: Complemental strand, 30050844 - 30050772
Alignment:
| Q |
80 |
taaatcacagtttcgcattagacatacatcgatgttgtgtatcaactattaagtacctcatttataaatctaa |
152 |
Q |
| |
|
||||||||| | | ||||||| |||||||| |||||||||||| ||| |||||||| || || ||||| |||| |
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| T |
30050844 |
taaatcacaatatagcattaggcatacatcaatgttgtgtatcgactgttaagtacatctttcataaagctaa |
30050772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 145
Target Start/End: Complemental strand, 4974335 - 4974284
Alignment:
| Q |
94 |
gcattagacatacatcgatgttgtgtatcaactattaagtacctcatttata |
145 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||| ||| |||||| |
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|
| T |
4974335 |
gcattagacatacattaatgttatgtatcaactattaagtatctcttttata |
4974284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 145
Target Start/End: Complemental strand, 4992243 - 4992192
Alignment:
| Q |
94 |
gcattagacatacatcgatgttgtgtatcaactattaagtacctcatttata |
145 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||| ||| |||||| |
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|
| T |
4992243 |
gcattagacatacattaatgttatgtatcaactattaagtatctcttttata |
4992192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 157
Target Start/End: Complemental strand, 28843302 - 28843260
Alignment:
| Q |
115 |
tgtgtatcaactattaagtacctcatttataaatctaaccata |
157 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||| |||| |
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|
| T |
28843302 |
tgtgtatcaactgttaagtacctcttttataaatctaaacata |
28843260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 289
Target Start/End: Complemental strand, 35780851 - 35780768
Alignment:
| Q |
204 |
aaaagtgagttatggaatgtcagaaaaaat-attcttaatgaagagaaacaacattttaggtagggaatatacatctaacacatgac |
289 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||| || ||||| |||| |||| |||| |||||||||||| |||||||||||||||| |
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| T |
35780851 |
aaaattgagtaatggaatgtcaaaaaaaattatacttaa---agagcaacacaatttaaggtagggaatacacatctaacacatgac |
35780768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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