View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0633_low_12 (Length: 404)

Name: NF0633_low_12
Description: NF0633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0633_low_12
NF0633_low_12
[»] chr7 (10 HSPs)
chr7 (117-323)||(46490165-46490371)
chr7 (121-323)||(46520397-46520599)
chr7 (124-323)||(46478970-46479169)
chr7 (136-317)||(46516771-46516952)
chr7 (121-323)||(46326599-46326801)
chr7 (121-260)||(46494467-46494606)
chr7 (124-323)||(46524466-46524665)
chr7 (121-266)||(46464842-46464985)
chr7 (124-215)||(46532019-46532110)
chr7 (121-215)||(46323002-46323096)
[»] chr3 (1 HSPs)
chr3 (121-311)||(7475365-7475555)


Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 117 - 323
Target Start/End: Original strand, 46490165 - 46490371
Alignment:
Q  117 cacgtaggctttgattctttcagggcgaaacaaacaaagataccaaccaatgatggcaccccaatcatgagctacaagaaacactcggtcaactccaagt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  46490165 cacgtaggctttgattctttcagggcgaaacaaacaaagataccaaccaatgatggcaccccaatcatgagctacaagaaacactcggtcaacgccaagt 46490264  T
Q  217 gagtcgatgagagcaacgacgtcaccaaccaaatggaagattgtgtagctactaatggaggccggagcatcggtgtcgccataaccacggagatctggag 316  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46490265 gagtcgatgagagcaacgatgtcaccaaccaaatggaagattgtgtagctactaatggaggccggagcatcggtgtcgccataaccacggagatctggag 46490364  T
Q  317 caacagc 323  Q
    |||||||    
T  46490365 caacagc 46490371  T

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Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 121 - 323
Target Start/End: Original strand, 46520397 - 46520599
Alignment:
Q  121 taggctttgattctttcagggcgaaacaaacaaagataccaaccaatgatggcaccccaatcatgagctacaagaaacactcggtcaactccaagtgagt 220  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||| || |||||||    
T  46520397 taggctttgattctttcagggcgaaacatgcaaagataccaaccaatcatggcaccccaatcatgagctacaaggaacacttggtcaacgccgagtgagt 46520496  T
Q  221 cgatgagagcaacgacgtcaccaaccaaatggaagattgtgtagctactaatggaggccggagcatcggtgtcgccataaccacggagatctggagcaac 320  Q
    |||||||||||||||  ||||| ||||| ||||||||||||||||| || || || || ||||||||||||||||| || ||||| ||||||||||||||    
T  46520497 cgatgagagcaacgatatcacccaccaagtggaagattgtgtagctgcttattgaagcgggagcatcggtgtcgccgtagccacgaagatctggagcaac 46520596  T
Q  321 agc 323  Q
    |||    
T  46520597 agc 46520599  T

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Target: chr7; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 124 - 323
Target Start/End: Original strand, 46478970 - 46479169
Alignment:
Q  124 gctttgattctttcagggcgaaacaaacaaagataccaaccaatgatggcaccccaatcatgagctacaagaaacactcggtcaactccaagtgagtcga 223  Q
    ||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||| || ||||||||||    
T  46478970 gctttgattttttcagggcgaaataaacaaagataccaaccaatcatggcaccccaatcatgagctacaaggaacacttggtcaacgccgagtgagtcga 46479069  T
Q  224 tgagagcaacgacgtcaccaaccaaatggaagattgtgtagctactaatggaggccggagcatcggtgtcgccataaccacggagatctggagcaacagc 323  Q
    ||||||||||||  ||||| ||||| ||||||||||||||||| || || || || ||||||||||||||||| || ||||| |||||||||||||||||    
T  46479070 tgagagcaacgatatcacccaccaagtggaagattgtgtagctgcttattgaagcgggagcatcggtgtcgccgtagccacgaagatctggagcaacagc 46479169  T

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Target: chr7; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 136 - 317
Target Start/End: Original strand, 46516771 - 46516952
Alignment:
Q  136 tcagggcgaaacaaacaaagataccaaccaatgatggcaccccaatcatgagctacaagaaacactcggtcaactccaagtgagtcgatgagagcaacga 235  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||| |||| || || |||||||| || ||||||||||    
T  46516771 tcaggacgaaacaaacaaagataccaaccaatgatagcaccccaatcatgagccacaaggaaaacttggtccacacccagtgagtcaattagagcaacga 46516870  T
Q  236 cgtcaccaaccaaatggaagattgtgtagctactaatggaggccggagcatcggtgtcgccataaccacggagatctggagc 317  Q
      |||||||||||||| || ||||||||||||||||  || |  |||||||| ||||| || || |||| ||||||||||||    
T  46516871 tatcaccaaccaaatgtaaaattgtgtagctactaactgaagtgggagcatcagtgtcaccgtagccacagagatctggagc 46516952  T

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Target: chr7; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 121 - 323
Target Start/End: Complemental strand, 46326801 - 46326599
Alignment:
Q  121 taggctttgattctttcagggcgaaacaaacaaagataccaaccaatgatggcaccccaatcatgagctacaagaaacactcggtcaactccaagtgagt 220  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||| | ||||| || ||| | || || |||||  |||    
T  46326801 taggctttgattctttcagggcgaaacatacaaagataccaaccaatgatggcacccatatcatgaccaacaaggaaaacttgttccacaccaagcaagt 46326702  T
Q  221 cgatgagagcaacgacgtcaccaaccaaatggaagattgtgtagctactaatggaggccggagcatcggtgtcgccataaccacggagatctggagcaac 320  Q
    ||||||||| ||| | ||||||||| |  || ||   ||||||||| |||||||| | |||| |||| ||||| ||||| ||||||||||| ||||||||    
T  46326701 cgatgagagaaacaatgtcaccaactacgtgaaaacatgtgtagctgctaatggaagacggaacatctgtgtcaccatagccacggagatcgggagcaac 46326602  T
Q  321 agc 323  Q
    |||    
T  46326601 agc 46326599  T

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Target: chr7; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 121 - 260
Target Start/End: Original strand, 46494467 - 46494606
Alignment:
Q  121 taggctttgattctttcagggcgaaacaaacaaagataccaaccaatgatggcaccccaatcatgagctacaagaaacactcggtcaactccaagtgagt 220  Q
    |||||||| | ||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||| || ||| | ||||| ||||| ||||    
T  46494467 taggctttaactctctcagggcgaaacaagcaaagataccaaccaacgatggcaccccaatcatgagccacaaggaagacttgatcaaccccaagcgagt 46494566  T
Q  221 cgatgagagcaacgacgtcaccaaccaaatggaagattgt 260  Q
    ||||||| ||||| | |||||||||||| |||||||||||    
T  46494567 cgatgagcgcaacaatgtcaccaaccaagtggaagattgt 46494606  T

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Target: chr7; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 124 - 323
Target Start/End: Original strand, 46524466 - 46524665
Alignment:
Q  124 gctttgattctttcagggcgaaacaaacaaagataccaaccaatgatggcaccccaatcatgagctacaagaaacactcggtcaactccaagtgagtcga 223  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||| | ||||| || ||  | || |    
T  46524466 gctttgattctttcagggcgaaacatacaaagataccaaccaatgatagcaccccaatcatgagcaacaagaaacacttgatcaacacccagaaaatcta 46524565  T
Q  224 tgagagcaacgacgtcaccaaccaaatggaagattgtgtagctactaatggaggccggagcatcggtgtcgccataaccacggagatctggagcaacagc 323  Q
    | || ||||| |  ||||| || |  || ||   ||||||||||||||  || | ||||||||||||||| ||||| ||||||||||| |||||||||||    
T  46524566 taagtgcaacaagatcacctactatgtgaaaacctgtgtagctactaactgaagacggagcatcggtgtcaccatagccacggagatcgggagcaacagc 46524665  T

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Target: chr7; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 121 - 266
Target Start/End: Original strand, 46464842 - 46464985
Alignment:
Q  121 taggctttgattctttcagggcgaaacaaacaaagataccaaccaatgatggcaccccaatcatgagctacaagaaacactcggtcaactccaagtgagt 220  Q
    |||||||||| ||||||||| |||||||||||  ||||||||||| | | |||||||||||||||||| |||| ||| ||| | ||||| ||||||||||    
T  46464842 taggctttgactctttcaggacgaaacaaaca--gataccaaccagttaaggcaccccaatcatgagcaacaaaaaagacttgatcaaccccaagtgagt 46464939  T
Q  221 cgatgagagcaacgacgtcaccaaccaaatggaagattgtgtagct 266  Q
    | ||||||||||||| ||||||||| || |||||||||||||||||    
T  46464940 ctatgagagcaacgatgtcaccaactaagtggaagattgtgtagct 46464985  T

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Target: chr7; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 124 - 215
Target Start/End: Original strand, 46532019 - 46532110
Alignment:
Q  124 gctttgattctttcagggcgaaacaaacaaagataccaaccaatgatggcaccccaatcatgagctacaagaaacactcggtcaactccaag 215  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||| |||||    
T  46532019 gctttgattctttcagggcgaaacatacaaagataccaaccaatgatagcaccccaatcatgagccacaagaaacacttggtcaacaccaag 46532110  T

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Target: chr7; HSP #10
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 121 - 215
Target Start/End: Complemental strand, 46323096 - 46323002
Alignment:
Q  121 taggctttgattctttcagggcgaaacaaacaaagataccaaccaatgatggcaccccaatcatgagctacaagaaacactcggtcaactccaag 215  Q
    ||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||    
T  46323096 taggctttgattctttcagggcgaaacatgcaaaggtaccaaccaatgatggcaccccaatcatgagctacaagaaacacttgatcaacgccaag 46323002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 121 - 311
Target Start/End: Complemental strand, 7475555 - 7475365
Alignment:
Q  121 taggctttgattctttcagggcgaaacaaacaaagataccaaccaatgatggcaccccaatcatgagctacaagaaacactcggtcaactccaagtgagt 220  Q
    |||||||||||||||||||||||||||   ||||| |||||||||||||||||||||||||||||||| |||||||||||| | ||||| |||||  | |    
T  7475555 taggctttgattctttcagggcgaaacgtgcaaaggtaccaaccaatgatggcaccccaatcatgagccacaagaaacacttgatcaacaccaagaaaat 7475456  T
Q  221 cgatgagagcaacgacgtcaccaaccaaatggaagattgtgtagctactaatggaggccggagcatcggtgtcgccataaccacggagatc 311  Q
    | || || ||||| | ||||||||||| ||| ||   ||||||||| || || || |  |||| ||||||||| ||||| |||||||||||    
T  7475455 ctataagtgcaacaaggtcaccaaccatatgaaaccctgtgtagctgcttattgaagatggagaatcggtgtcaccatagccacggagatc 7475365  T

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