View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0633_low_16 (Length: 382)
Name: NF0633_low_16
Description: NF0633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0633_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 31063604 - 31063984
Alignment:
| Q |
1 |
cctgatctgagaatttctcgctcatgcattctaagtctcttagcttctactaaggctgcaacaatcataaccatgactgaaaatgctaagccaatggcaa |
100 |
Q |
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| T |
31063604 |
cctgatctgagaatttcttgctcatgcattctaagtctcttagcttctactaaggctgcaacaatcataaccatgactgaaaatgctaagccaatggcaa |
31063703 |
T |
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| Q |
101 |
ttcttctaaggatgctgatgcctctttcattaccagtgatttttctcataattggtacaagaactttgtcatataagggaacaaatatcaaggtgccaat |
200 |
Q |
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| T |
31063704 |
ttcttctaaggatgctgatgcctctttcattaccagtgatttttctcataattggtacaagaactttgtcatataagggaacaaatatcaaggtgccaat |
31063803 |
T |
|
| Q |
201 |
tgctgtaacagagacaacagaacctggtgggatagtgaaattgtcgcttagcttcaagttcatcgaagctgcttgttttacaaagagtgttgtagcttgt |
300 |
Q |
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| T |
31063804 |
tgctgtaacagagacaacagaacctggtgggattgtgaaattgtcgcttagcttcaagttcattgaagctgcttgttttacaaagagtgttgtagcttgt |
31063903 |
T |
|
| Q |
301 |
gctaaagttattccagttgttaatgaagctagccatatggggattatgttaagaacaagctttgtttcttcaactcttgtc |
381 |
Q |
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| T |
31063904 |
gctaaagttattccagttgttaatgaagctagccatatggggattatgttaagaacaagctttgtttcttcaactcttgtc |
31063984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 14 - 381
Target Start/End: Original strand, 31074997 - 31075364
Alignment:
| Q |
14 |
tttctcgctcatgcattctaagtctcttagcttctactaaggctgcaacaatcataaccatgactgaaaatgctaagccaatggcaattcttctaaggat |
113 |
Q |
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| T |
31074997 |
tttcttgctcatgcattctaagtctcttagcttctactaatgctgcaacaatcataactatgactgaagatgtgaagccaatggaaattcttctaagtat |
31075096 |
T |
|
| Q |
114 |
gctgatgcctctttcattaccagtgatttttctcataattggtacaagaactttgtcatataagggaacaaatatcaaggtgccaattgctgtaacagag |
213 |
Q |
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|||||| |||||||||||||||||||||||||||| ||||| |||| || |||||||||| |||||| |||| |||||||||||||||| ||| | |
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| T |
31075097 |
gctgattcctctttcattaccagtgatttttctcagcattggaacaataatcttgtcatatattggaacagatattaaggtgccaattgctgctgcagtg |
31075196 |
T |
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| Q |
214 |
acaacagaacctggtgggatagtgaaattgtcgcttagcttcaagttcatcgaagctgcttgttttacaaagagtgttgtagcttgtgctaaagttattc |
313 |
Q |
| |
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||||||| |||||||||| |||||| |||| |||| |||||||||||| ||||| |||||||||||||||||||| | ||||||||| | ||||| |
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| T |
31075197 |
gaaacagaagctggtgggattgtgaaactgtcacttatcttcaagttcattgaagcagcttgttttacaaagagtgtggagccttgtgctacacatattc |
31075296 |
T |
|
| Q |
314 |
cagttgttaatgaagctagccatatggggattatgttaagaacaagctttgtttcttcaactcttgtc |
381 |
Q |
| |
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| ||||||||||||| ||||||||| || |||| || |||| ||||||||||||||| ||||||||| |
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| T |
31075297 |
ctgttgttaatgaagttagccatattggaattacattcagaataagctttgtttcttctactcttgtc |
31075364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 160
Target Start/End: Original strand, 31057542 - 31057681
Alignment:
| Q |
21 |
ctcatgcattctaagtctcttagcttctactaaggctgcaacaatcataaccatgactgaaaatgctaagccaatggcaattcttctaaggatgctgatg |
120 |
Q |
| |
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|||| ||||||||||||||||| ||||||||||||||| || || ||||| ||| |||| | || ||||| ||| || || |||||||| |||||| |
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| T |
31057542 |
ctcaagcattctaagtctcttaacttctactaaggctgaaagaaccataataatggctgagagtgtcaagccgatgtttatcctgctaaggatactgatg |
31057641 |
T |
|
| Q |
121 |
cctctttcattaccagtgatttttctcataattggtacaa |
160 |
Q |
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||||||||||| ||||||||||| ||||||||||| |||| |
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| T |
31057642 |
cctctttcattgccagtgattttcctcataattggaacaa |
31057681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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