View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0633_low_20 (Length: 327)
Name: NF0633_low_20
Description: NF0633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0633_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 54 - 314
Target Start/End: Complemental strand, 43468858 - 43468597
Alignment:
| Q |
54 |
tggcctattgcgcacgctagcctaagcaagaagtaatactatcaacagaaaagaactttcttggtcccaaagccaacagaagaaaaatataacaaactaa |
153 |
Q |
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| T |
43468858 |
tggcctattgcgcacgctagcctaagcaagaagtaatactatcaacagaaaagaactttcttggtcccaaagccaacagaagaaaaatataagaaactaa |
43468759 |
T |
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| Q |
154 |
attgcttcactctataggnnnnnnnnnn-tataaaaagtacgaaaagaatttcttgttggaaaagccaaatagagcattatataccactctctgcttcac |
252 |
Q |
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| T |
43468758 |
attgcttcactctatagaaaaaaaaaatatataaaaagtacgaaaagaatttcttgttggaaaagccaaacagagcattatataccactctctgcttcac |
43468659 |
T |
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| Q |
253 |
agagtgagtgagtttatcgtcttattgctactcttcctttcatccttcttagctatggtttc |
314 |
Q |
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||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43468658 |
agagtcagtgtgtttatcgtcttattgctgctcttcctttcatccttcttagctatggtttc |
43468597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 205 - 314
Target Start/End: Complemental strand, 43477184 - 43477076
Alignment:
| Q |
205 |
cttgttggaaaagccaaatagagcattatataccactctctgcttcacagagtgagtgagtttatcgtcttattgctactcttcctttcatccttcttag |
304 |
Q |
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| T |
43477184 |
cttgttggaaaagccaaacagagcattatatataccactctgcttcagagagtgagtgtgtttatcggctaattgctacacttcttttcat-cttcatag |
43477086 |
T |
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| Q |
305 |
ctatggtttc |
314 |
Q |
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| T |
43477085 |
ctatggtttc |
43477076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 43480121 - 43480082
Alignment:
| Q |
183 |
ataaaaagtacgaaaagaatttcttgttggaaaagccaaa |
222 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||| |
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| T |
43480121 |
ataaaaagtaagaaaataatttcttgttggaaaagccaaa |
43480082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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