View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0633_low_21 (Length: 314)
Name: NF0633_low_21
Description: NF0633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0633_low_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 166; Significance: 8e-89; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 30 - 231
Target Start/End: Original strand, 24357831 - 24358035
Alignment:
| Q |
30 |
taccattaacaaataaagaggtttgctagcttaaatatgccatcggagggtaacaaaatcaaatattttatcaaactctttcatccatggctagaagaaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24357831 |
taccattaacaaataaagaggtttgctagcttaaatatgccatcggagagtaacaaaatcaaatattttatcaaactctttcatccatggctagaagaaa |
24357930 |
T |
|
| Q |
130 |
ttttactctgcccatccgtttcttcaagatcatcctccaaactaatcttcataggattgtaagcattcttattagtac--taa-ttactttagaattctt |
226 |
Q |
| |
|
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||| |||||||||||||||| |
|
|
| T |
24357931 |
ttctactctccccatccgtttcttcaagatcatcctccaaactaatcttcataggattgtaagcattcctatcagtacagtaatttactttagaattctt |
24358030 |
T |
|
| Q |
227 |
agcat |
231 |
Q |
| |
|
||||| |
|
|
| T |
24358031 |
agcat |
24358035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 140 - 281
Target Start/End: Complemental strand, 24365385 - 24365244
Alignment:
| Q |
140 |
cccatccgtttcttcaagatcatcctccaaactaatcttcataggattgtaagcattcttattagtactaattactttagaattcttagcatataaccac |
239 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24365385 |
cccatccttttcttcaagatcatcctccaaactaatcttcaaaggattgtaagcattcttattagtactaattactttagaattcttagcatataaccac |
24365286 |
T |
|
| Q |
240 |
acatcacacatataacatgtcatatttgcatttcacatattt |
281 |
Q |
| |
|
||||||||||| |||||||||||| ||||||| |||||||| |
|
|
| T |
24365285 |
acatcacacatgcaacatgtcatatatgcatttaacatattt |
24365244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 100 - 209
Target Start/End: Original strand, 24351016 - 24351125
Alignment:
| Q |
100 |
tcaaactctttcatccatggctagaagaaattttactctgcccatccgtttcttcaagatcatcctccaaactaatcttcataggattgtaagcattctt |
199 |
Q |
| |
|
|||||||| |||||||||||||| |||||| ||| || |||||||||||||||||||| || ||||||||||||||||| |||||||||||||||| | |
|
|
| T |
24351016 |
tcaaactccgtcatccatggctaggagaaatgctacacttcccatccgtttcttcaagattattctccaaactaatcttcaaaggattgtaagcattcct |
24351115 |
T |
|
| Q |
200 |
attagtacta |
209 |
Q |
| |
|
|||||||||| |
|
|
| T |
24351116 |
attagtacta |
24351125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 100 - 194
Target Start/End: Original strand, 24354350 - 24354444
Alignment:
| Q |
100 |
tcaaactctttcatccatggctagaagaaattttactctgcccatccgtttcttcaagatcatcctccaaactaatcttcataggattgtaagca |
194 |
Q |
| |
|
|||||||| ||||||||||||||| |||||| ||| | ||||||| ||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
24354350 |
tcaaactccatcatccatggctagaggaaattctaccttccccatccatttcttcaagatcatcctccaaactaatcttcaaaggattgtgagca |
24354444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 143 - 209
Target Start/End: Original strand, 24369326 - 24369392
Alignment:
| Q |
143 |
atccgtttcttcaagatcatcctccaaactaatcttcataggattgtaagcattcttattagtacta |
209 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
24369326 |
atccgtttcttcaaaatcatccttcaaactaatcttcataggattgtaagcattctttttagtacta |
24369392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 110 - 197
Target Start/End: Original strand, 24361660 - 24361747
Alignment:
| Q |
110 |
tcatccatggctagaagaaattttactctgcccatccgtttcttcaagatcatcctccaaactaatcttcataggattgtaagcattc |
197 |
Q |
| |
|
||||||||||||||| |||| ||| ||||| | |||||||||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
24361660 |
tcatccatggctagaggaaaaactaccctgccatttcgtttcttcaagatcatcctccaaacaaatcttcaaaggattgtaagcattc |
24361747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 100 - 197
Target Start/End: Original strand, 24313065 - 24313162
Alignment:
| Q |
100 |
tcaaactctttcatccatggctagaagaaattttactctgcccatccgtttcttcaagatcatcctccaaactaatcttcataggattgtaagcattc |
197 |
Q |
| |
|
|||||||| |||||||||| ||| |||||| || || |||||||||||||||||||| || || |||||||||||||| |||||||||||||||| |
|
|
| T |
24313065 |
tcaaactccatcatccatggttaggagaaatccaacacttcccatccgtttcttcaagattattcttcaaactaatcttcaaaggattgtaagcattc |
24313162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 180
Target Start/End: Original strand, 24344010 - 24344080
Alignment:
| Q |
110 |
tcatccatggctagaagaaattttactctgcccatccgtttcttcaagatcatcctccaaactaatcttca |
180 |
Q |
| |
|
||||||||||| || |||||| ||| | ||||||| ||| |||||||||||||||||| |||||||||| |
|
|
| T |
24344010 |
tcatccatggcaaggagaaatgctacctttcccatccattttttcaagatcatcctccaatctaatcttca |
24344080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3465 times since January 2019
Visitors: 4035