View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0633_low_24 (Length: 288)
Name: NF0633_low_24
Description: NF0633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0633_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 30 - 278
Target Start/End: Complemental strand, 24831263 - 24831016
Alignment:
| Q |
30 |
cataaaagtgtagccacttattattttgttggacatgtttgatgcaagnnnnnnnnnnatttaatgaagaatcttccaatggacatggcaatgaaaaaat |
129 |
Q |
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| T |
24831263 |
cataaaagcgtagccacttattattttgttggacatgtttgatgcaagttttttttt-atttaatgaagaatcttccaatggacatgacaatgaaaaaat |
24831165 |
T |
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| Q |
130 |
caaatgtcatatgatacagatacagctgtgggggaaaaaattgtctctcattcaatggttgttccgattcgctagtagaaagggtaaggctcagcttcat |
229 |
Q |
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| T |
24831164 |
caaatgtcatatgatacagatacagctgtggggaaaaaaattgtctctcattcaatggttgttccgattcgctagtagaaagggtaaggctcagcttcat |
24831065 |
T |
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| Q |
230 |
tccatggatctatacgatacgaattggatttctctgtgtacatttcatt |
278 |
Q |
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| T |
24831064 |
tccatggatctatatgatacgaattggatgtctctgtgtacatttcatt |
24831016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 240
Target Start/End: Complemental strand, 815036 - 814968
Alignment:
| Q |
172 |
gtctctcattcaatggttgttccgattcgctagtagaaagggtaaggctcagcttcattccatggatct |
240 |
Q |
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| T |
815036 |
gtctcccattcaatggttgtgcagattcgctagtagaaacggtaaggctcaccttcatttcatggatct |
814968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 73
Target Start/End: Complemental strand, 16947436 - 16947403
Alignment:
| Q |
40 |
tagccacttattattttgttggacatgtttgatg |
73 |
Q |
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| T |
16947436 |
tagccacttattattttgttggacatgtttgatg |
16947403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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