View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0633_low_28 (Length: 274)

Name: NF0633_low_28
Description: NF0633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0633_low_28
NF0633_low_28
[»] chr4 (1 HSPs)
chr4 (57-274)||(28783769-28783986)


Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 57 - 274
Target Start/End: Complemental strand, 28783986 - 28783769
Alignment:
Q  57 catagtgcaacagctgcaccttgtcctgctcatgatggcctgcaaaacaccaaaattgtcatcaagtcaaaatctgatgacaaacacaccctaagtactg 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28783986 catagtgcaacagctgcaccttgtcctgctcatgatggcctgcaaaacaccaaaattgtcatcaagtcaaaatctgatgacaaacacaccctaagtactg 28783887  T
Q  157 ctgctgctggtaaactcaaattttcatcagcaacatgtacctccaaattcttttggcctctcttcaaacatcctctttttcctaagcttcctcctcctgc 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||     
T  28783886 ctgctgctggtaaactcaaattttcatcagcaacatgtacctccaaattcttttggcctctcttcaaacatcctctttttcctaagcttcctcatcctga 28783787  T
Q  257 tttacctcaattaccccc 274  Q
    |||||||||||| |||||    
T  28783786 tttacctcaatttccccc 28783769  T

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