View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0633_low_29 (Length: 269)
Name: NF0633_low_29
Description: NF0633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0633_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 34551097 - 34551018
Alignment:
| Q |
139 |
ggcttgctctaagctattaatttgtccaaatctttgaacattgacaaaattgatattctctatttttagcaaccacatat |
218 |
Q |
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| T |
34551097 |
ggcttgctctaagctattaatttgttcaaatctttgaacattgacaaaattgatattctctatttttagcaaccacatat |
34551018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 39 - 138
Target Start/End: Complemental strand, 34551233 - 34551134
Alignment:
| Q |
39 |
ataacaattcaatgagtttcctaaaactcgacgtggattctcgcctatcaagtaatgactatttaaatggttgatcttgcaaataagggctcacctttaa |
138 |
Q |
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| T |
34551233 |
ataacaattcaatgagtttcctaaaactcgacgtggattctcacctaacaagtgatgactatttaaagggttgattgtgcaaatgggggctcacctttaa |
34551134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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