View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0633_low_3 (Length: 546)
Name: NF0633_low_3
Description: NF0633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0633_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 114 - 539
Target Start/End: Complemental strand, 45349697 - 45349277
Alignment:
| Q |
114 |
ttatctctctgtgttttcctgtaatgtaattgatttatctctgtttcgtaactttcagtagcaaaaaactcgtataccatataatcgtac--tatcagat |
211 |
Q |
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| T |
45349697 |
ttatctctctgtgttttcctgtaatgtaattgatttatctctgtttcgtaactttcagtagcaaaaaactcgtataccatataatcgtactatatcagac |
45349598 |
T |
|
| Q |
212 |
gagcatttcaataggtgcagtccaccaaaccaacaataatcataaaatgttcattgctcctctnnnnnnntataaaattgtcattggtttttaggttcat |
311 |
Q |
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| T |
45349597 |
gagcatttcaataggtgcagtccaccaaaccaacaataatcataaaatgttcattgctcctctaaaaaaatataaaattgtcattgctttttaggttcat |
45349498 |
T |
|
| Q |
312 |
gtgagtattttcacattcgatttacaagtgggatattattaattacacattgcatacttacaaaacaagtcacttaatactattgatattgcattttcaa |
411 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45349497 |
gtgagtattttcacattcgatttacaagtggga---tattaattacacattgcaaacatacaaaacaagtcacttaatactattgatattgcattttcaa |
45349401 |
T |
|
| Q |
412 |
atcaatatatagctcctactcatgagtgtggtttcgaagaacnnnnnnntgaaaacccaataaccttcttaaagcttctacaagtacaattatcaatgtt |
511 |
Q |
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|||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45349400 |
atca----atagctcctactcatgagtgtggtttcgaagaacaaaaaaatgaaaaccccataaccttcttaaagcttctacaagtacaattatcaatgtt |
45349305 |
T |
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| Q |
512 |
ataatcttcttcaatattgttcatctca |
539 |
Q |
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| T |
45349304 |
ataatcttcttcaatattgttcatctca |
45349277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 22534082 - 22534046
Alignment:
| Q |
8 |
ccaagaatattgggaactacgttgtcccacaactggt |
44 |
Q |
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| T |
22534082 |
ccaagaatattgggaactacgttgtcccacaactggt |
22534046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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