View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0633_low_30 (Length: 261)
Name: NF0633_low_30
Description: NF0633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0633_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 12 - 232
Target Start/End: Original strand, 31789714 - 31789935
Alignment:
| Q |
12 |
cagagatgacgcaagtaacacagtgaccaaagtagagcaactatcctttctgtttacctcgaatggtttttaggtaatgttggaccacacctatattgag |
111 |
Q |
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| T |
31789714 |
cagaaatgacgcaagtaacacagtgaccaaagtagagcaactatcctttctgtttacctcgaatggtttttaggtaatgttggaccacacctatattgag |
31789813 |
T |
|
| Q |
112 |
gagcttcaatgg-gnnnnnnnngggttgcattgcagctttttgattagtttataactttgatcatgtggctcctactccaaggaagtcaataaatggaat |
210 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31789814 |
gagcttcaatggaaaaaaaaaagggttgcattgcagctttttgattagtttataactttgatcatgtggctcctactccaaggaagtcaataaatggaat |
31789913 |
T |
|
| Q |
211 |
tgcatctgaaggagggggatta |
232 |
Q |
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|||||||||||||||||||||| |
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| T |
31789914 |
tgcatctgaaggagggggatta |
31789935 |
T |
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