View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0633_low_32 (Length: 245)
Name: NF0633_low_32
Description: NF0633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0633_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 38028104 - 38027869
Alignment:
| Q |
1 |
atgtactccatgaatattgtgcagtgataacaaaatcaacgcacatagcaaaataattttttggataaatagagacattgcacctttggttatt---ctt |
97 |
Q |
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| T |
38028104 |
atgtattccatgaatattgtgcagtgataacaaaatcaacgcacatagcaaaataattttttggataaatagagacattgcacctttggttattaatctt |
38028005 |
T |
|
| Q |
98 |
ttctttggaagtgaataatattggatatatgtaggaagaaaaaacgtttgtatttatagaagattttgaggaaaaaatacatataacttcataaatgtaa |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38028004 |
ttctttggaagtgaataatattggatatatgtaggaagaaaaaacatatgtatttatagaagattttgaggaaaaaatacataaaacttcataaatgtaa |
38027905 |
T |
|
| Q |
198 |
taatattttaaatatttgggttgacctagtgatatt |
233 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
38027904 |
taatattttaaatatttgggttgacctagtgatatt |
38027869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 25790312 - 25790250
Alignment:
| Q |
66 |
taaatagagacattgcacctttggttattcttttctttggaagtgaataatattggatatatg |
128 |
Q |
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|||| ||||||||| ||||||| ||| |||||||||||||| ||||||||||| | |||||| |
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| T |
25790312 |
taaaaagagacatttcacctttaattaatcttttctttggaactgaataatatttgttatatg |
25790250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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