View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0633_low_35 (Length: 228)
Name: NF0633_low_35
Description: NF0633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0633_low_35 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 24830766 - 24830986
Alignment:
| Q |
1 |
tcatcatgaaaaacaattaaccctcttaaaaaccttaatcaccttacacagatgcttacaacataaaattaaccagaagcctcaaaatcgcggtgcaatc |
100 |
Q |
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| T |
24830766 |
tcatcatgaaaaacaaataaccctcttaaaaaccttaatcaccttacac-------tacaacataaaactaaccagaagcctcaaaatcgcggtgcaatc |
24830858 |
T |
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| Q |
101 |
ggaaaccttaattaaacatttttgtctttccaatcaaccatcatcaacattcttgacactatttactgcataatatttgcttctaccctcagaaataaca |
200 |
Q |
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|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
24830859 |
gggaaccttaattaaacatttttgtctttccaatcaaccattatcaacattcttgacactatttactgcataatatttgcttctgccctcagaaataaca |
24830958 |
T |
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| Q |
201 |
aggactaagtcgtcacacaaatgaatca |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
24830959 |
aggactaagtcgtcacacaaatgaatca |
24830986 |
T |
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