View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0633_low_6 (Length: 482)

Name: NF0633_low_6
Description: NF0633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0633_low_6
NF0633_low_6
[»] chr8 (15 HSPs)
chr8 (64-482)||(3782975-3783387)
chr8 (18-65)||(5689591-5689637)
chr8 (18-63)||(17982977-17983021)
chr8 (18-63)||(19945158-19945203)
chr8 (18-63)||(44304179-44304224)
chr8 (18-64)||(30143664-30143709)
chr8 (18-63)||(1746018-1746063)
chr8 (18-63)||(6599289-6599333)
chr8 (18-63)||(6674742-6674786)
chr8 (18-61)||(41366420-41366462)
chr8 (26-63)||(2628071-2628108)
chr8 (18-63)||(4731982-4732026)
chr8 (18-63)||(12702431-12702475)
chr8 (18-63)||(31218581-31218625)
chr8 (19-64)||(40321400-40321443)
[»] chr2 (17 HSPs)
chr2 (280-482)||(37915076-37915275)
chr2 (18-64)||(36205463-36205509)
chr2 (18-63)||(723547-723591)
chr2 (18-63)||(2334218-2334262)
chr2 (18-63)||(24885909-24885953)
chr2 (26-63)||(32289900-32289937)
chr2 (18-63)||(34139573-34139617)
chr2 (18-63)||(36773882-36773926)
chr2 (18-63)||(36987875-36987919)
chr2 (18-63)||(42362669-42362713)
chr2 (22-64)||(4502932-4502973)
chr2 (107-173)||(37961253-37961319)
chr2 (18-47)||(6594819-6594848)
chr2 (18-47)||(14633643-14633672)
chr2 (18-63)||(17057169-17057213)
chr2 (18-63)||(17085152-17085196)
chr2 (18-63)||(33162254-33162298)
[»] chr6 (11 HSPs)
chr6 (18-63)||(16452127-16452172)
chr6 (18-65)||(22963506-22963553)
chr6 (18-65)||(23824840-23824887)
chr6 (18-63)||(2171326-2171371)
chr6 (18-63)||(5406002-5406047)
chr6 (18-63)||(5408869-5408914)
chr6 (18-63)||(5410327-5410372)
chr6 (18-63)||(5413194-5413239)
chr6 (18-63)||(26954091-26954135)
chr6 (20-63)||(28137211-28137253)
chr6 (18-63)||(30834333-30834378)
[»] chr4 (12 HSPs)
chr4 (18-63)||(5369881-5369926)
chr4 (18-63)||(29999628-29999673)
chr4 (18-63)||(48143372-48143417)
chr4 (18-63)||(45686987-45687031)
chr4 (18-63)||(48893443-48893487)
chr4 (20-63)||(52095162-52095204)
chr4 (18-61)||(56178438-56178480)
chr4 (18-64)||(36463195-36463240)
chr4 (18-63)||(29254816-29254861)
chr4 (18-47)||(47038231-47038260)
chr4 (18-63)||(52082463-52082507)
chr4 (18-63)||(54199708-54199752)
[»] chr3 (13 HSPs)
chr3 (18-63)||(9635923-9635968)
chr3 (19-63)||(9634621-9634665)
chr3 (18-63)||(19683687-19683732)
chr3 (18-63)||(5236257-5236301)
chr3 (18-63)||(5257943-5257988)
chr3 (18-63)||(9581607-9581652)
chr3 (18-63)||(22834807-22834851)
chr3 (18-63)||(31314764-31314808)
chr3 (18-63)||(40734821-40734865)
chr3 (19-63)||(9666270-9666313)
chr3 (18-64)||(7764789-7764835)
chr3 (18-47)||(44700299-44700328)
chr3 (18-63)||(51399138-51399182)
[»] chr1 (11 HSPs)
chr1 (18-63)||(20762992-20763037)
chr1 (18-63)||(833970-834014)
chr1 (18-63)||(8550584-8550628)
chr1 (18-63)||(37503362-37503406)
chr1 (18-63)||(40122001-40122045)
chr1 (29-63)||(13316151-13316185)
chr1 (18-64)||(28265358-28265403)
chr1 (18-63)||(45644158-45644202)
chr1 (18-47)||(49918674-49918703)
chr1 (19-63)||(1833833-1833876)
chr1 (19-47)||(44455485-44455513)
[»] chr7 (6 HSPs)
chr7 (18-63)||(29991377-29991422)
chr7 (18-63)||(35854240-35854285)
chr7 (18-63)||(38671025-38671069)
chr7 (18-63)||(41648814-41648858)
chr7 (18-47)||(25616179-25616208)
chr7 (18-62)||(48489755-48489798)
[»] chr5 (9 HSPs)
chr5 (18-63)||(9789021-9789066)
chr5 (18-63)||(30182912-30182957)
chr5 (18-64)||(25413084-25413130)
chr5 (26-63)||(18441441-18441478)
chr5 (19-63)||(5887235-5887278)
chr5 (18-64)||(16649634-16649679)
chr5 (29-63)||(26178221-26178255)
chr5 (18-63)||(31183297-31183341)
chr5 (18-62)||(13240075-13240118)
[»] scaffold1519 (1 HSPs)
scaffold1519 (18-63)||(1240-1285)
[»] scaffold0286 (1 HSPs)
scaffold0286 (18-63)||(11890-11935)
[»] scaffold0002 (1 HSPs)
scaffold0002 (18-63)||(434858-434903)


Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 64 - 482
Target Start/End: Original strand, 3782975 - 3783387
Alignment:
Q  64 tcttccaatcttataattccttcacattccgaaaatgctccctcttatatacgctacctcaatggagactttctctccttcaccgttgctgaatccttag 163  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  3782975 tcttccaatcttataattccttcacattccgaaaatgttcccccttatatacgctacctcaatggagactctctctccttcaccattgctgaatccttag 3783074  T
Q  164 caaacttcaacctccttatttcagattcttcacaagatgttaaaaatttgcacccnnnnnnnnnctttccgaacttgccttctcctcatactgaacacaa 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||    
T  3783075 caaacttcaacctccttatttcagattcttcacaagatgttaaaaatttgcaccctttt------tttccgaacttgccttctcctcatactgaacacaa 3783168  T
Q  264 tgacacacgcgtcgtccctctaatggccattcaagtcaccattctacctaactctagattcgctatctgcctcacgtttaaccacattgcaggtgatgga 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3783169 tgacacacgcgtcgtccctctaatggccattcaagtcaccattctacctaactctggattcgctatctgcctcacgtttaaccacattgcaggtgatgga 3783268  T
Q  364 aaatcacttcaccaattcatgaaattctggtcttatgtttccaaaaccaaaaccatcaacaacagtttatctctagaacactctctgcctcttgatcttc 463  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3783269 aaatcacttcaccaattcatgaaactctggtcatatgtttccaaaaccaaaaccatcaacaacagattatctctagaacactctctgcctcttgatcttc 3783368  T
Q  464 ttccttcacatgaaagaga 482  Q
    |||||||||||||||||||    
T  3783369 ttccttcacatgaaagaga 3783387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 5689591 - 5689637
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaacatc 65  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  5689591 catcatagtttgtattggtgtgattttgag-tcggaattcacaacatc 5689637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 17982977 - 17983021
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  17982977 catcatagtttgtattggtgtga-tttgagatcggaattcacaaca 17983021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 19945203 - 19945158
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||    
T  19945203 catcaaagtttgtattggtgtgattttgagaccggaattcacaaca 19945158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 44304179 - 44304224
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||    
T  44304179 catcatagtatgtattggtgtgattttgagaacggaattcacaaca 44304224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 30143664 - 30143709
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaacat 64  Q
    |||||||||||||||||||||||||||||| || |||||||||||||    
T  30143664 catcatagtttgtattggtgtgattttgag-tctgaattcacaacat 30143709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 1746063 - 1746018
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    |||||||||| |||||||||||||||||||| || |||||||||||    
T  1746063 catcatagttcgtattggtgtgattttgagaccgaaattcacaaca 1746018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 6599289 - 6599333
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  6599289 catcatagtttgtattggtgtgattttgag-tccgaattcacaaca 6599333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 6674742 - 6674786
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  6674742 catcatagtttgtattggtgtgattttgag-tccgaattcacaaca 6674786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 41366462 - 41366420
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaa 61  Q
    |||||||||||||||||||||||||||||| || ||||||||||    
T  41366462 catcatagtttgtattggtgtgattttgag-tccgaattcacaa 41366420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 2628071 - 2628108
Alignment:
Q  26 tttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    |||||||||||||| ||| |||||||||||||||||||    
T  2628071 tttgtattggtgtggtttcgagatcggaattcacaaca 2628108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 4731982 - 4732026
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    |||||| ||||||||||||||||||||||| || ||||||||||||    
T  4731982 catcattgtttgtattggtgtgattttgagttc-gaattcacaaca 4732026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 12702475 - 12702431
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    ||||||||||||||||| |||||||||||| || ||||||||||||    
T  12702475 catcatagtttgtattgatgtgattttgag-tccgaattcacaaca 12702431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 31218581 - 31218625
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    ||||||||||| ||||||||||| ||||||| ||||||||||||||    
T  31218581 catcatagtttatattggtgtga-tttgagaccggaattcacaaca 31218625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 40321400 - 40321443
Alignment:
Q  19 atcatagtttgtattggtgtgattttgagatcggaattcacaacat 64  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||    
T  40321400 atcatagtttgtatt-gtgtgattttgag-tcggaattcacaacat 40321443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 280 - 482
Target Start/End: Original strand, 37915076 - 37915275
Alignment:
Q  280 cctctaatggccattcaagtcaccattctacctaactctagattcgctatctgcctcacgtttaaccacattgcaggtgatggaaaatcacttcaccaat 379  Q
    ||||| |||||||||||| |||||||||||||||||||| | ||| |||| || ||| ||||||| ||| |||  |  || |||||||||||||| || |    
T  37915076 cctctcatggccattcaaatcaccattctacctaactctggcttctctatatgtctcgcgtttaaacacgttgttgcagacggaaaatcacttcatcatt 37915175  T
Q  380 tcatgaaattctggtcttatgtttccaaaaccaaaaccatcaacaacagtttatctctagaacactctctgcctcttgatcttcttccttcacatgaaag 479  Q
    |||||||||| ||| | | |||||||||| | | ||| | |||||||   || ||||| ||| |||||| |||||||||   ||||||||| ||||||||    
T  37915176 tcatgaaattttgggcatttgtttccaaagctataacaaacaacaacgagttgtctcttgaatactctccgcctcttga---tcttccttcccatgaaag 37915272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 36205509 - 36205463
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaacat 64  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||    
T  36205509 catcatagtttgtattagtgtgattttgagaccggaattcacaacat 36205463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 723591 - 723547
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  723591 catcatagtttgtattggtgtgattttgag-tccgaattcacaaca 723547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 2334262 - 2334218
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  2334262 catcatagtttgtattggtgtgattttgag-tctgaattcacaaca 2334218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 24885909 - 24885953
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  24885909 catcatagtttgtattggtgtgattttgag-tccgaattcacaaca 24885953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 32289900 - 32289937
Alignment:
Q  26 tttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    |||||||||||||| |||||||||||||||||||||||    
T  32289900 tttgtattggtgtggttttgagatcggaattcacaaca 32289937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 34139617 - 34139573
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  34139617 catcatagtttgtattggtgtgattttgag-tccgaattcacaaca 34139573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 36773882 - 36773926
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||    
T  36773882 catcatagtttgtattggtgtgattttga-atccgaattcacaaca 36773926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 36987919 - 36987875
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  36987919 catcatagtttgtattggtgtgattttgag-tccgaattcacaaca 36987875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 42362669 - 42362713
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  42362669 catcatagtttgtattggtgtgattttgag-tccgaattcacaaca 42362713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 4502973 - 4502932
Alignment:
Q  22 atagtttgtattggtgtgattttgagatcggaattcacaacat 64  Q
    ||||||||||||||||||| ||||||| |||||||||||||||    
T  4502973 atagtttgtattggtgtga-tttgagaccggaattcacaacat 4502932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 37961319 - 37961253
Alignment:
Q  107 cttatatacgctacctcaatggagactttctctccttcaccgttgctgaatccttagcaaacttcaa 173  Q
    |||| ||||| |||||| ||| ||||| | ||||||||||||| |||||||||| |||| |||||||    
T  37961319 cttacatacgttacctcgatgaagactctatctccttcaccgtagctgaatcctcagcagacttcaa 37961253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 6594848 - 6594819
Alignment:
Q  18 catcatagtttgtattggtgtgattttgag 47  Q
    ||||||||||||||||||||||||||||||    
T  6594848 catcatagtttgtattggtgtgattttgag 6594819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 14633672 - 14633643
Alignment:
Q  18 catcatagtttgtattggtgtgattttgag 47  Q
    ||||||||||||||||||||||||||||||    
T  14633672 catcatagtttgtattggtgtgattttgag 14633643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 17057213 - 17057169
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    ||||||| |||||||||||||||||||||| || ||||||||||||    
T  17057213 catcatattttgtattggtgtgattttgag-tccgaattcacaaca 17057169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 17085196 - 17085152
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    ||||||| |||||||||||||||||||||| || ||||||||||||    
T  17085196 catcatattttgtattggtgtgattttgag-tccgaattcacaaca 17085152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 33162298 - 33162254
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    ||||||||||||||||| |||||||||||| || ||||||||||||    
T  33162298 catcatagtttgtattgatgtgattttgag-tccgaattcacaaca 33162254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 16452172 - 16452127
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    |||||||||| |||||||||||||||||||||||||||||||||||    
T  16452172 catcatagttcgtattggtgtgattttgagatcggaattcacaaca 16452127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 22963553 - 22963506
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaacatc 65  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||    
T  22963553 catcatagtttgtattggtgtgattttgagtctggaattcacaacatc 22963506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 23824840 - 23824887
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaacatc 65  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||    
T  23824840 catcatagtttgtattggtgtgattttgagtctggaattcacaacatc 23824887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 2171371 - 2171326
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    |||||||||| |||||||||||| ||||||| ||||||||||||||    
T  2171371 catcatagttcgtattggtgtgactttgagaccggaattcacaaca 2171326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 5406047 - 5406002
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    ||||||||||||||||||||||| ||| ||| ||||||||||||||    
T  5406047 catcatagtttgtattggtgtgactttaagaccggaattcacaaca 5406002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 5408914 - 5408869
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    ||||||||||||||||||||||| |||||||  |||||||||||||    
T  5408914 catcatagtttgtattggtgtgactttgagactggaattcacaaca 5408869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 5410372 - 5410327
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    ||||||||||||||||||||||| ||| ||| ||||||||||||||    
T  5410372 catcatagtttgtattggtgtgactttaagaccggaattcacaaca 5410327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 5413239 - 5413194
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    ||||||||||||||||||||||| |||||||  |||||||||||||    
T  5413239 catcatagtttgtattggtgtgactttgagactggaattcacaaca 5413194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 26954135 - 26954091
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  26954135 catcatagtttgtattggtgtgattttgag-tccgaattcacaaca 26954091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 28137253 - 28137211
Alignment:
Q  20 tcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    ||||||||||||||||||||||||||||| | ||||||||||||    
T  28137253 tcatagtttgtattggtgtgattttgaga-ccgaattcacaaca 28137211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 30834378 - 30834333
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    ||||||| || |||||||||||||||||||| || |||||||||||    
T  30834378 catcatatttcgtattggtgtgattttgagaccgaaattcacaaca 30834333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 5369926 - 5369881
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  5369926 catcatagtttgtattggtgtgattttgagaccggaattcacaaca 5369881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 29999673 - 29999628
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  29999673 catcatagtttgtattggtgtgattttgagaccggaattcacaaca 29999628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 48143372 - 48143417
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||    
T  48143372 catcatagtttgtattggtgtgattttgagtccggaattcacaaca 48143417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 45687031 - 45686987
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  45687031 catcatagtttgtattggtgtgattttgag-tctgaattcacaaca 45686987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 48893487 - 48893443
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  48893487 catcatagtttgtattggtgtgattttgag-tccgaattcacaaca 48893443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 52095204 - 52095162
Alignment:
Q  20 tcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    |||||||||||||||||||||||||||| || ||||||||||||    
T  52095204 tcatagtttgtattggtgtgattttgag-tccgaattcacaaca 52095162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 56178480 - 56178438
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaa 61  Q
    |||||||||||||||||||||||||||||| || ||||||||||    
T  56178480 catcatagtttgtattggtgtgattttgag-tccgaattcacaa 56178438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 36463240 - 36463195
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaacat 64  Q
    |||||||||||||||| ||||||||||||| || |||||||||||||    
T  36463240 catcatagtttgtattagtgtgattttgag-tccgaattcacaacat 36463195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 29254816 - 29254861
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    |||||||||||||||| |||||||||| || || ||||||||||||    
T  29254816 catcatagtttgtattagtgtgattttaagttccgaattcacaaca 29254861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 47038260 - 47038231
Alignment:
Q  18 catcatagtttgtattggtgtgattttgag 47  Q
    ||||||||||||||||||||||||||||||    
T  47038260 catcatagtttgtattggtgtgattttgag 47038231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 52082507 - 52082463
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    ||||||| |||||||||||||||||||||| || ||||||||||||    
T  52082507 catcataatttgtattggtgtgattttgag-tccgaattcacaaca 52082463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 54199752 - 54199708
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    |||||| ||||||||||||||||||||||| || ||||||||||||    
T  54199752 catcatcgtttgtattggtgtgattttgag-tccgaattcacaaca 54199708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 9635968 - 9635923
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  9635968 catcatagtttgtattggtgtgattttgagaccggaattcacaaca 9635923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 9634665 - 9634621
Alignment:
Q  19 atcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  9634665 atcatagtttgtattggtgtgattttgagaccggaattcacaaca 9634621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 19683732 - 19683687
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||    
T  19683732 catcatagtttgtattggtgtgagtttgagaccggaattcacaaca 19683687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 5236301 - 5236257
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  5236301 catcatagtttgtattggtgtgattttgag-tccgaattcacaaca 5236257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 5257988 - 5257943
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    |||||||||| |||||||||||| ||||||| ||||||||||||||    
T  5257988 catcatagttcgtattggtgtgactttgagaccggaattcacaaca 5257943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 9581607 - 9581652
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    ||||||||||| ||||||||||||||||||  ||||||||||||||    
T  9581607 catcatagtttatattggtgtgattttgagtccggaattcacaaca 9581652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 22834851 - 22834807
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  22834851 catcatagtttgtattggtgtgattttgag-tccgaattcacaaca 22834807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 31314764 - 31314808
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||    
T  31314764 catcatagtttgtattggtgtgattttgag-tcggtattcacaaca 31314808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 40734821 - 40734865
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||    
T  40734821 catcatagtttgtattggtgtgattttgaga-ccgaattcacaaca 40734865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 9666313 - 9666270
Alignment:
Q  19 atcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    ||||||||||||||||||||||||||||| || ||||||||||||    
T  9666313 atcatagtttgtattggtgtgattttgag-tccgaattcacaaca 9666270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 7764789 - 7764835
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaacat 64  Q
    |||||||||||||||||||||  |||||||  |||||||||||||||    
T  7764789 catcatagtttgtattggtgtagttttgagtccggaattcacaacat 7764835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 44700328 - 44700299
Alignment:
Q  18 catcatagtttgtattggtgtgattttgag 47  Q
    ||||||||||||||||||||||||||||||    
T  44700328 catcatagtttgtattggtgtgattttgag 44700299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 51399138 - 51399182
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    ||||||||||||||||||| |||||||||| || ||||||||||||    
T  51399138 catcatagtttgtattggtatgattttgag-tccgaattcacaaca 51399182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 20762992 - 20763037
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  20762992 catcatagtttgtattggtgtgattttgagaccggaattcacaaca 20763037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 834014 - 833970
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  834014 catcatagtttgtattggtgtgattttgag-tccgaattcacaaca 833970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 8550628 - 8550584
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  8550628 catcatagtttgtattggtgtgattttgag-tccgaattcacaaca 8550584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 37503406 - 37503362
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  37503406 catcatagtttgtattggtgtgattttgag-tccgaattcacaaca 37503362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 40122045 - 40122001
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  40122045 catcatagtttgtattggtgtgattttgag-tccgaattcacaaca 40122001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 13316185 - 13316151
Alignment:
Q  29 gtattggtgtgattttgagatcggaattcacaaca 63  Q
    |||||||||||||||||||| ||||||||||||||    
T  13316185 gtattggtgtgattttgagaccggaattcacaaca 13316151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 28265403 - 28265358
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaacat 64  Q
    |||||||||||||||||||||||||||||| || |||||| ||||||    
T  28265403 catcatagtttgtattggtgtgattttgag-tccgaattcccaacat 28265358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 45644202 - 45644158
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    |||||||||||||||| ||||||||||||| || ||||||||||||    
T  45644202 catcatagtttgtatttgtgtgattttgag-tccgaattcacaaca 45644158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 49918674 - 49918703
Alignment:
Q  18 catcatagtttgtattggtgtgattttgag 47  Q
    ||||||||||||||||||||||||||||||    
T  49918674 catcatagtttgtattggtgtgattttgag 49918703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 1833833 - 1833876
Alignment:
Q  19 atcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    ||||||||||||||||||||||| ||||| || ||||||||||||    
T  1833833 atcatagtttgtattggtgtgatattgag-tccgaattcacaaca 1833876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 44455485 - 44455513
Alignment:
Q  19 atcatagtttgtattggtgtgattttgag 47  Q
    |||||||||||||||||||||||||||||    
T  44455485 atcatagtttgtattggtgtgattttgag 44455513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 29991377 - 29991422
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||    
T  29991377 catcatagtttgtattggtgtgactttgagaacggaattcacaaca 29991422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 35854240 - 35854285
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    |||||||||||||||| ||||||||||||||  |||||||||||||    
T  35854240 catcatagtttgtatttgtgtgattttgagactggaattcacaaca 35854285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 38671069 - 38671025
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  38671069 catcatagtttgtattggtgtgattttgag-tccgaattcacaaca 38671025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 41648858 - 41648814
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  41648858 catcatagtttgtattggtgtgattttgag-tccgaattcacaaca 41648814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 25616179 - 25616208
Alignment:
Q  18 catcatagtttgtattggtgtgattttgag 47  Q
    ||||||||||||||||||||||||||||||    
T  25616179 catcatagtttgtattggtgtgattttgag 25616208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 48489755 - 48489798
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaac 62  Q
    |||||||||| ||||||||||||||||||| || |||||||||||    
T  48489755 catcatagttggtattggtgtgattttgag-tccgaattcacaac 48489798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 9789066 - 9789021
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||    
T  9789066 catcatactttgtattggtgtggttttgagatcggaattcacaaca 9789021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 30182912 - 30182957
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||    
T  30182912 catcatagtttgttttggtgtgattttgagaccggaattcacaaca 30182957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 25413084 - 25413130
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaacat 64  Q
    |||||||||| |||||||||||||||||| | |||||||||||||||    
T  25413084 catcatagttcgtattggtgtgattttgaaaccggaattcacaacat 25413130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 18441478 - 18441441
Alignment:
Q  26 tttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    |||||||||||||| |||||||||||||||||||||||    
T  18441478 tttgtattggtgtggttttgagatcggaattcacaaca 18441441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 5887278 - 5887235
Alignment:
Q  19 atcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    ||||||||||||||||||||||||||||| || ||||||||||||    
T  5887278 atcatagtttgtattggtgtgattttgag-tccgaattcacaaca 5887235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 16649679 - 16649634
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaacat 64  Q
    ||||||||||||||||||| |||||||||| || |||||||||||||    
T  16649679 catcatagtttgtattggtatgattttgagttc-gaattcacaacat 16649634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 63
Target Start/End: Original strand, 26178221 - 26178255
Alignment:
Q  29 gtattggtgtgattttgagatcggaattcacaaca 63  Q
    ||||||||||| |||||||||||||||||||||||    
T  26178221 gtattggtgtggttttgagatcggaattcacaaca 26178255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 31183297 - 31183341
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    |||||| ||||||||||||||||||||||| || ||||||||||||    
T  31183297 catcatggtttgtattggtgtgattttgag-tccgaattcacaaca 31183341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 13240075 - 13240118
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaac 62  Q
    |||||||||||||||| ||||||||||||| || |||||||||||    
T  13240075 catcatagtttgtattagtgtgattttgagttc-gaattcacaac 13240118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1519 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold1519
Description:

Target: scaffold1519; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 1240 - 1285
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    |||||||||| |||||||||||| ||||||| ||||||||||||||    
T  1240 catcatagttcgtattggtgtgactttgagaccggaattcacaaca 1285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 11890 - 11935
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    |||||||||| |||||||||||| ||||||| ||||||||||||||    
T  11890 catcatagttcgtattggtgtgactttgagaccggaattcacaaca 11935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 434858 - 434903
Alignment:
Q  18 catcatagtttgtattggtgtgattttgagatcggaattcacaaca 63  Q
    |||||||||| |||||||||||| ||||||| ||||||||||||||    
T  434858 catcatagttcgtattggtgtgactttgagaacggaattcacaaca 434903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 3173 times since January 2019
Visitors: 4029