View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0634_high_3 (Length: 347)

Name: NF0634_high_3
Description: NF0634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0634_high_3
NF0634_high_3
[»] chr7 (21 HSPs)
chr7 (176-310)||(29286805-29286939)
chr7 (1-75)||(6384394-6384471)
chr7 (73-132)||(29286742-29286801)
chr7 (77-143)||(21619306-21619372)
chr7 (73-156)||(42656410-42656493)
chr7 (73-111)||(6384487-6384525)
chr7 (77-138)||(47177535-47177596)
chr7 (77-138)||(47795856-47795917)
chr7 (77-133)||(7612358-7612414)
chr7 (26-66)||(29275080-29275120)
chr7 (77-140)||(33552929-33552992)
chr7 (79-152)||(19718908-19718982)
chr7 (106-156)||(18965804-18965856)
chr7 (78-127)||(21568759-21568808)
chr7 (77-138)||(33672977-33673038)
chr7 (78-127)||(45806608-45806657)
chr7 (120-156)||(1431400-1431436)
chr7 (288-320)||(29279035-29279067)
chr7 (124-156)||(46281223-46281255)
chr7 (120-156)||(48157212-48157248)
chr7 (120-156)||(49060482-49060518)
[»] chr2 (12 HSPs)
chr2 (82-156)||(39567807-39567881)
chr2 (77-155)||(9833054-9833132)
chr2 (78-139)||(32364833-32364894)
chr2 (77-152)||(43570315-43570388)
chr2 (120-154)||(10150697-10150731)
chr2 (101-151)||(17795171-17795221)
chr2 (78-127)||(41407191-41407240)
chr2 (87-156)||(43199323-43199392)
chr2 (77-133)||(1625800-1625856)
chr2 (120-156)||(5511507-5511543)
chr2 (77-133)||(19608740-19608796)
chr2 (84-156)||(42457854-42457926)
[»] chr5 (15 HSPs)
chr5 (72-149)||(1618986-1619063)
chr5 (77-155)||(41819511-41819589)
chr5 (77-147)||(10771979-10772049)
chr5 (77-138)||(39105363-39105424)
chr5 (72-144)||(42573883-42573955)
chr5 (77-156)||(5963374-5963453)
chr5 (77-156)||(28776874-28776953)
chr5 (84-154)||(29588787-29588856)
chr5 (175-228)||(12521541-12521594)
chr5 (77-138)||(19460496-19460557)
chr5 (79-156)||(42582813-42582890)
chr5 (120-156)||(11054128-11054164)
chr5 (176-228)||(28413288-28413340)
chr5 (77-125)||(32372513-32372561)
chr5 (75-115)||(40426649-40426689)
[»] chr8 (16 HSPs)
chr8 (74-156)||(37444507-37444589)
chr8 (77-156)||(26215395-26215474)
chr8 (83-156)||(41442527-41442600)
chr8 (194-229)||(4281578-4281613)
chr8 (85-156)||(16210978-16211049)
chr8 (190-229)||(42215085-42215124)
chr8 (85-151)||(8216787-8216853)
chr8 (77-127)||(14956426-14956476)
chr8 (107-156)||(3537123-3537172)
chr8 (77-150)||(37353346-37353419)
chr8 (78-139)||(43053647-43053708)
chr8 (201-229)||(779064-779092)
chr8 (120-156)||(1470948-1470984)
chr8 (120-156)||(4558740-4558776)
chr8 (176-228)||(28769343-28769395)
chr8 (85-129)||(35749693-35749737)
[»] chr6 (11 HSPs)
chr6 (87-156)||(33736747-33736816)
chr6 (72-152)||(6654509-6654589)
chr6 (190-229)||(17241255-17241294)
chr6 (77-127)||(6538406-6538456)
chr6 (101-155)||(31671994-31672047)
chr6 (120-156)||(781327-781363)
chr6 (84-156)||(2206497-2206568)
chr6 (120-156)||(2514644-2514680)
chr6 (189-229)||(6536974-6537014)
chr6 (120-156)||(24836291-24836327)
chr6 (120-156)||(34429782-34429818)
[»] chr4 (14 HSPs)
chr4 (79-144)||(17751226-17751291)
chr4 (77-138)||(30066876-30066937)
chr4 (77-156)||(2987088-2987167)
chr4 (80-156)||(2733222-2733298)
chr4 (108-156)||(6364079-6364127)
chr4 (190-229)||(7694013-7694052)
chr4 (72-154)||(42641727-42641809)
chr4 (100-156)||(1203209-1203265)
chr4 (80-156)||(3155505-3155581)
chr4 (120-156)||(25487637-25487673)
chr4 (77-125)||(29912838-29912886)
chr4 (100-156)||(44249208-44249264)
chr4 (106-146)||(53137967-53138007)
chr4 (114-150)||(54392916-54392952)
[»] chr3 (16 HSPs)
chr3 (100-149)||(23815975-23816024)
chr3 (77-156)||(30574006-30574083)
chr3 (78-127)||(5331184-5331233)
chr3 (78-127)||(29520609-29520658)
chr3 (78-155)||(40665329-40665406)
chr3 (72-144)||(35127475-35127547)
chr3 (77-129)||(39980618-39980670)
chr3 (109-156)||(24235775-24235822)
chr3 (80-155)||(25447337-25447412)
chr3 (77-156)||(49465755-49465834)
chr3 (195-229)||(42745071-42745105)
chr3 (122-156)||(48588609-48588643)
chr3 (122-154)||(20143869-20143901)
chr3 (122-154)||(23269288-23269320)
chr3 (195-243)||(36445858-36445906)
chr3 (120-156)||(48397588-48397624)
[»] chr1 (13 HSPs)
chr1 (77-156)||(37841897-37841976)
chr1 (72-156)||(4445599-4445686)
chr1 (77-150)||(15084789-15084862)
chr1 (176-223)||(11893602-11893649)
chr1 (77-155)||(27146341-27146419)
chr1 (77-127)||(38247342-38247392)
chr1 (176-229)||(10199411-10199464)
chr1 (176-229)||(37593687-37593740)
chr1 (77-129)||(43589537-43589589)
chr1 (116-156)||(45234135-45234175)
chr1 (120-156)||(49517012-49517048)
chr1 (120-156)||(49557083-49557119)
chr1 (120-156)||(49692142-49692178)
[»] scaffold0019 (1 HSPs)
scaffold0019 (106-154)||(104228-104276)
[»] scaffold0508 (1 HSPs)
scaffold0508 (120-152)||(9871-9903)
[»] scaffold0024 (1 HSPs)
scaffold0024 (84-156)||(27483-27554)


Alignment Details
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 176 - 310
Target Start/End: Original strand, 29286805 - 29286939
Alignment:
Q  176 ataagttatttttaagagtttatgtaaataagatgaaaacaacttatgaacatggcgtaaacagtttcataaatcctttgaaacagtctctcaagtattt 275  Q
    |||||||||||| || || ||||||||||||| ||||||||||| ||||||||| | ||||| ||||| |||||  |||||||||  |||| |||||  |    
T  29286805 ataagttattttgaaaagcttatgtaaataagctgaaaacaactgatgaacatgtcataaaccgtttcttaaatattttgaaacaaactcttaagtacgt 29286904  T
Q  276 aggccagtaaagatatttaaatggagtttctgtct 310  Q
    |||||| |||||||||||||| |||||||||||||    
T  29286905 aggccaataaagatatttaaacggagtttctgtct 29286939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 6384394 - 6384471
Alignment:
Q  1 cataagcttgtttccataagctctt---aaaaactctaatacaaatagttgtctactttaatatggcaaatatggctt 75  Q
    ||||||||||||||||||||||||    ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6384394 cataagcttgtttccataagctctctcaaaagactctaatacaaatagttgtctactttaatatggcaaatatggctt 6384471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 132
Target Start/End: Original strand, 29286742 - 29286801
Alignment:
Q  73 cttcatttgcagcttatagcataaccacttattatgataagcacttttgtataagttatt 132  Q
    ||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||    
T  29286742 cttcatttgcagcctacagcgtaaccacttattatgataagcacttttgtataagttatt 29286801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 143
Target Start/End: Original strand, 21619306 - 21619372
Alignment:
Q  77 atttgcagcttatagcataaccacttattatgataagcacttttgtataagttatttctataataaa 143  Q
    ||||||||||||||||| || ||||||| ||||||||||||| | | |||| |||||||||||||||    
T  21619306 atttgcagcttatagcacaagcacttatcatgataagcacttatctctaagctatttctataataaa 21619372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 156
Target Start/End: Original strand, 42656410 - 42656493
Alignment:
Q  73 cttcatttgcagcttatagcataaccacttattatgataagcacttttgtataagttatttctataataaaaaataaaataaag 156  Q
    ||||||| | |||||||||||||| | ||||| |  |||||||||| | |||||| ||||||||||| |||| |||||||||||    
T  42656410 cttcattagtagcttatagcataagcgcttatcaaaataagcacttatatataagctatttctataacaaaagataaaataaag 42656493  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 111
Target Start/End: Original strand, 6384487 - 6384525
Alignment:
Q  73 cttcatttgcagcttatagcataaccacttattatgata 111  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  6384487 cttcatttgcagcttatagcataaccacttattaggata 6384525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 47177535 - 47177596
Alignment:
Q  77 atttgcagcttatagcataaccacttattatgataagcacttttgtataagttatttctata 138  Q
    |||||| | ||||||||||| ||||||| ||||||||| ||| |||||||| ||||||||||    
T  47177535 atttgctgattatagcataagcacttatgatgataagcccttctgtataaggtatttctata 47177596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 47795856 - 47795917
Alignment:
Q  77 atttgcagcttatagcataaccacttattatgataagcacttttgtataagttatttctata 138  Q
    |||||||||||||||||||| | ||||| ||||||| ||||| |||||||  ||||||||||    
T  47795856 atttgcagcttatagcataagcgcttatcatgataaccacttatgtataacctatttctata 47795917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 7612358 - 7612414
Alignment:
Q  77 atttgcagcttatagcataaccacttattatgataagcacttttgtataagttattt 133  Q
    |||||||||||||||||||| ||||||| ||||||||| | | |||||||| |||||    
T  7612358 atttgcagcttatagcataagcacttatcatgataagctcatatgtataagctattt 7612414  T

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Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 29275080 - 29275120
Alignment:
Q  26 aaaaactctaatacaaatagttgtctactttaatatggcaa 66  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  29275080 aaaaactctaatacaaatacatgtctactttaatatggcaa 29275120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 140
Target Start/End: Complemental strand, 33552992 - 33552929
Alignment:
Q  77 atttgcagcttatagcataaccacttattatgataagcacttttgtataagttatttctataat 140  Q
    ||||||||||||| ||| || ||||||  ||||||||| ||| |||||||| ||||||||||||    
T  33552992 atttgcagcttattgcacaagcacttaccatgataagcgcttatgtataagctatttctataat 33552929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 152
Target Start/End: Original strand, 19718908 - 19718982
Alignment:
Q  79 ttgcagcttatagcataaccacttattatgataagcacttttgtataagttatttctataata-aaaaataaaat 152  Q
    |||||||||||| || || ||||||| ||||||| ||||| ||| |||| ||||||||||| | |||||||||||    
T  19718908 ttgcagcttataacacaagcacttatcatgataaacacttgtgtgtaagctatttctataacataaaaataaaat 19718982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 156
Target Start/End: Complemental strand, 18965856 - 18965804
Alignment:
Q  106 atgataagcacttttgtataagtta--tttctataataaaaaataaaataaag 156  Q
    ||||||||||||| |||||||| ||  ||||||||| ||||||||||||||||    
T  18965856 atgataagcacttgtgtataagctaaatttctataacaaaaaataaaataaag 18965804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 21568808 - 21568759
Alignment:
Q  78 tttgcagcttatagcataaccacttattatgataagcacttttgtataag 127  Q
    |||||||||||||||||||   ||||| ||||||||||||| ||||||||    
T  21568808 tttgcagcttatagcataagtgcttatcatgataagcacttatgtataag 21568759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 33672977 - 33673038
Alignment:
Q  77 atttgcagcttatagcataaccacttattatgataagcacttttgtataagttatttctata 138  Q
    ||||||||||||||||| ||  | |||||||||||||| ||| |||||||| || |||||||    
T  33672977 atttgcagcttatagcacaagtatttattatgataagcgcttatgtataagctacttctata 33673038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 45806657 - 45806608
Alignment:
Q  78 tttgcagcttatagcataaccacttattatgataagcacttttgtataag 127  Q
    |||||||||||||||| || ||||||| || |||||||||| ||||||||    
T  45806657 tttgcagcttatagcaaaagcacttatcataataagcacttatgtataag 45806608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 1431436 - 1431400
Alignment:
Q  120 tgtataagttatttctataataaaaaataaaataaag 156  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  1431436 tgtataagttatttccataatgaaaaataaaataaag 1431400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 320
Target Start/End: Original strand, 29279035 - 29279067
Alignment:
Q  288 atatttaaatggagtttctgtctgtacattatg 320  Q
    ||||||||||||||||||||||| |||||||||    
T  29279035 atatttaaatggagtttctgtctatacattatg 29279067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 46281255 - 46281223
Alignment:
Q  124 taagttatttctataataaaaaataaaataaag 156  Q
    |||||||||||||||| ||||||||||||||||    
T  46281255 taagttatttctataacaaaaaataaaataaag 46281223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 48157248 - 48157212
Alignment:
Q  120 tgtataagttatttctataataaaaaataaaataaag 156  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  48157248 tgtataacttatttctataataaaagataaaataaag 48157212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 49060482 - 49060518
Alignment:
Q  120 tgtataagttatttctataataaaaaataaaataaag 156  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  49060482 tgtataagctatttctataacaaaaaataaaataaag 49060518  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 156
Target Start/End: Original strand, 39567807 - 39567881
Alignment:
Q  82 cagcttatagcataaccacttattatgataagcacttttgtataagttatttctataataaaaaataaaataaag 156  Q
    |||||||| |||||| | ||||| ||||||||||||| |||||||| ||||||||||| |||| |||||||||||    
T  39567807 cagcttattgcataagcgcttatcatgataagcacttgtgtataagatatttctataacaaaagataaaataaag 39567881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 155
Target Start/End: Original strand, 9833054 - 9833132
Alignment:
Q  77 atttgcagcttatagcataaccacttattatgataagcacttttgtataagttatttctataataaaaaataaaataaa 155  Q
    |||| ||||||||||||||| || |||| ||||||| ||||| |||||||  |||||| |||| |||| ||||||||||    
T  9833054 atttacagcttatagcataagcatttatcatgataaacacttatgtataatctatttccataacaaaagataaaataaa 9833132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 32364894 - 32364833
Alignment:
Q  78 tttgcagcttatagcataaccacttattatgataagcacttttgtataagttatttctataa 139  Q
    |||| |||||||||||| |  |||||| ||||||||||||| |||||||| |||||||||||    
T  32364894 tttgtagcttatagcatgagaacttatcatgataagcacttatgtataagctatttctataa 32364833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 43570315 - 43570388
Alignment:
Q  77 atttgcagcttatagcataaccacttattatgataagcacttttgtataagttatttctataataaaaaataaaat 152  Q
    ||||||||||||||||| || ||||||| ||||||||| |  ||||||||| || ||||||| ||||| |||||||    
T  43570315 atttgcagcttatagcacaagcacttatcatgataagcgc--ttgtataagctaattctatagtaaaatataaaat 43570388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 154
Target Start/End: Original strand, 10150697 - 10150731
Alignment:
Q  120 tgtataagttatttctataataaaaaataaaataa 154  Q
    ||||||||||||||||||||||||| |||||||||    
T  10150697 tgtataagttatttctataataaaagataaaataa 10150731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 151
Target Start/End: Original strand, 17795171 - 17795221
Alignment:
Q  101 ttattatgataagcacttttgtataagttatttctataataaaaaataaaa 151  Q
    |||||||||||||||||| ||| ||| |||||| |||||||||| ||||||    
T  17795171 ttattatgataagcacttgtgtttaaattatttttataataaaatataaaa 17795221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 41407191 - 41407240
Alignment:
Q  78 tttgcagcttatagcataaccacttattatgataagcacttttgtataag 127  Q
    |||||||||||||||| || | ||||| ||||||||||||| ||||||||    
T  41407191 tttgcagcttatagcacaagcgcttatcatgataagcacttatgtataag 41407240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 156
Target Start/End: Original strand, 43199323 - 43199392
Alignment:
Q  87 tatagcataaccacttattatgataagcacttttgtataagttatttctataataaaaaataaaataaag 156  Q
    ||||||||||| |  ||| ||| ||||| ||| ||||||||||||||||| || |||| |||||||||||    
T  43199323 tatagcataactatgtatcatgttaagcgcttctgtataagttatttctacaacaaaagataaaataaag 43199392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 1625800 - 1625856
Alignment:
Q  77 atttgcagcttatagcataaccacttattatgataagcacttttgtataagttattt 133  Q
    ||||||||||||||| | |  |||||||||||||||||||||  ||||||| |||||    
T  1625800 atttgcagcttatagtacacacacttattatgataagcacttaagtataagctattt 1625856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 5511507 - 5511543
Alignment:
Q  120 tgtataagttatttctataataaaaaataaaataaag 156  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  5511507 tgtataagttatttctataatgaaatataaaataaag 5511543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 19608796 - 19608740
Alignment:
Q  77 atttgcagcttatagcataaccacttattatgataagcacttttgtataagttattt 133  Q
    ||||||||||||||||| || ||| ||  ||||||||||||| |||||||| |||||    
T  19608796 atttgcagcttatagcacaagcacataccatgataagcacttatgtataagctattt 19608740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 156
Target Start/End: Original strand, 42457854 - 42457926
Alignment:
Q  84 gcttatagcataaccacttattatgataagcacttttgtataagttatttctataataaaaaataaaataaag 156  Q
    |||||||||| || | | ||| |||||||||| || |||||||  |||||||||| ||||| |||||||||||    
T  42457854 gcttatagcacaagcgcctatcatgataagcatttatgtataatctatttctatagtaaaagataaaataaag 42457926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 72 - 149
Target Start/End: Original strand, 1618986 - 1619063
Alignment:
Q  72 gcttcatttgcagcttatagcataaccacttattatgataagcacttttgtataagttatttctataataaaaaataa 149  Q
    |||| |||||| ||||||||||||| | ||| | |||||||||||||||||||||| |||||||| || |||||||||    
T  1618986 gcttaatttgctgcttatagcataagcgcttttgatgataagcacttttgtataagctatttctaaaacaaaaaataa 1619063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 155
Target Start/End: Original strand, 41819511 - 41819589
Alignment:
Q  77 atttgcagcttatagcataaccacttattatgataagcacttttgtataagttatttctataataaaaaataaaataaa 155  Q
    |||| ||||||||||||||| ||||||| ||||| |||  ||||||||||| ||||||||||||  || ||||||||||    
T  41819511 atttacagcttatagcataaacacttatcatgatgagcggttttgtataagctatttctataatggaagataaaataaa 41819589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 147
Target Start/End: Complemental strand, 10772049 - 10771979
Alignment:
Q  77 atttgcagcttatagcataaccacttattatgataagcacttttgtataagttatttctataataaaaaat 147  Q
    ||||||||||||||||||||   ||||| ||||||| ||| | |||||||| ||||||||||| |||||||    
T  10772049 atttgcagcttatagcataagtgcttatcatgataaacacatatgtataagctatttctataacaaaaaat 10771979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 39105363 - 39105424
Alignment:
Q  77 atttgcagcttatagcataaccacttattatgataagcacttttgtataagttatttctata 138  Q
    ||||||||||||||||||||   ||||| ||||||||| ||| |||||||| ||||||||||    
T  39105363 atttgcagcttatagcataagtgcttatcatgataagcgcttatgtataagctatttctata 39105424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 42573955 - 42573883
Alignment:
Q  72 gcttcatttgcagcttatagcataaccacttattatgataagcacttttgtataagttatttctataataaaa 144  Q
    |||| |||||||||||||||| | | | ||||| ||||||||| ||| |||||||| ||||||||||| ||||    
T  42573955 gcttaatttgcagcttatagcctgagcgcttatcatgataagcgcttatgtataagctatttctataacaaaa 42573883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 156
Target Start/End: Complemental strand, 5963453 - 5963374
Alignment:
Q  77 atttgcagcttatagcataaccacttattatgataagcacttttgtataagttatttctataataaaaaataaaataaag 156  Q
    |||||||  ||||||||||| || |||| ||||||||| ||| |||| ||  |||||||||||| ||| |||||||||||    
T  5963453 atttgcaatttatagcataagcatttatcatgataagcgcttatgtacaaactatttctataatgaaagataaaataaag 5963374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 156
Target Start/End: Original strand, 28776874 - 28776953
Alignment:
Q  77 atttgcagcttatagcataaccacttattatgataagcacttttgtataagttatttctataataaaaaataaaataaag 156  Q
    |||||||||||||||| ||| ||||||| ||||||||  ||| |||||||| ||||| |||   |||| |||||||||||    
T  28776874 atttgcagcttatagcctaagcacttatcatgataagtgcttatgtataagctatttttattgaaaaagataaaataaag 28776953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 29588787 - 29588856
Alignment:
Q  84 gcttatagcataaccacttattatgataagcacttttgtataagttatttctataataaaaaataaaataa 154  Q
    ||||||||||||| ||||| |||| |||||  ||| |||||||| ||||||||||| |||| |||||||||    
T  29588787 gcttatagcataaacactttttat-ataagtgcttatgtataagctatttctataacaaaatataaaataa 29588856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 12521541 - 12521594
Alignment:
Q  175 tataagttatttttaagagtttatgtaaataagatgaaaacaacttatgaacat 228  Q
    |||||| |||||| ||||| ||||| ||||||| |||||||| |||||||||||    
T  12521541 tataagctattttgaagagcttatggaaataagctgaaaacagcttatgaacat 12521594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 19460557 - 19460496
Alignment:
Q  77 atttgcagcttatagcataaccacttattatgataagcacttttgtataagttatttctata 138  Q
    ||||||||||||||||| ||   ||||| ||||||||||||| |||||||  ||||||||||    
T  19460557 atttgcagcttatagcacaaatgcttatcatgataagcacttatgtataaactatttctata 19460496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 156
Target Start/End: Original strand, 42582813 - 42582890
Alignment:
Q  79 ttgcagcttatagcataaccacttattatgataagcacttttgtataagttatttctataataaaaaataaaataaag 156  Q
    |||||||||||||||||| |  |||| || |||||| ||| |||||||| |||||| || |||||| || ||||||||    
T  42582813 ttgcagcttatagcataagcgtttatcataataagcgcttatgtataagctatttccatgataaaagatgaaataaag 42582890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 11054128 - 11054164
Alignment:
Q  120 tgtataagttatttctataataaaaaataaaataaag 156  Q
    |||||||| |||||||||||||||| |||||||||||    
T  11054128 tgtataagctatttctataataaaagataaaataaag 11054164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 28413340 - 28413288
Alignment:
Q  176 ataagttatttttaagagtttatgtaaataagatgaaaacaacttatgaacat 228  Q
    ||||||||| ||  |||||||||| ||||||| |||||||| |||||||||||    
T  28413340 ataagttatcttggagagtttatggaaataagctgaaaacagcttatgaacat 28413288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 32372513 - 32372561
Alignment:
Q  77 atttgcagcttatagcataaccacttattatgataagcacttttgtata 125  Q
    ||||||||||||||||| || ||||||| ||||||||| ||| ||||||    
T  32372513 atttgcagcttatagcacaagcacttatcatgataagcccttatgtata 32372561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 40426649 - 40426689
Alignment:
Q  75 tcatttgcagcttatagcataaccacttattatgataagca 115  Q
    ||||||||||||||||||| || ||||||| ||||||||||    
T  40426649 tcatttgcagcttatagcacaagcacttatcatgataagca 40426689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 74 - 156
Target Start/End: Complemental strand, 37444589 - 37444507
Alignment:
Q  74 ttcatttgcagcttatagcataaccacttattatgataagcacttttgtataagttatttctataataaaaaataaaataaag 156  Q
    ||||||||||| ||| ||||||| ||||||| ||||||||| ||| |||||||| |||| |||||| |||| ||||| |||||    
T  37444589 ttcatttgcaggttaaagcataagcacttatcatgataagcgcttatgtataagctattactataacaaaagataaagtaaag 37444507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 156
Target Start/End: Original strand, 26215395 - 26215474
Alignment:
Q  77 atttgcagcttatagcataaccacttattatgataagcacttttgtataagttatttctataataaaaaataaaataaag 156  Q
    |||| ||||||||||||  | | ||||| ||||||||| ||| |||||||| ||||||||||| |||| |||||||||||    
T  26215395 attttcagcttatagcacgagcgcttataatgataagcgcttatgtataagctatttctataacaaaagataaaataaag 26215474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 156
Target Start/End: Complemental strand, 41442600 - 41442527
Alignment:
Q  83 agcttatagcataaccacttattatgataagcacttttgtataagttatttctataataaaaaataaaataaag 156  Q
    |||||||||||||| ||||||| |||||||| |||| |||||| | | ||||||||| |||| || ||||||||    
T  41442600 agcttatagcataaacacttatcatgataagtacttatgtataggctttttctataacaaaatattaaataaag 41442527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 194 - 229
Target Start/End: Original strand, 4281578 - 4281613
Alignment:
Q  194 tttatgtaaataagatgaaaacaacttatgaacatg 229  Q
    |||||| |||||||||||||||||||||||||||||    
T  4281578 tttatgaaaataagatgaaaacaacttatgaacatg 4281613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 16211049 - 16210978
Alignment:
Q  85 cttatagcataaccacttattatgataagcacttttgtataagttatttctataataaaaaataaaataaag 156  Q
    ||||||||| || ||||||| |||||| |||||  |||||||| |||||||||| ||||  |||||||||||    
T  16211049 cttatagcacaagcacttatcatgatacgcactcatgtataagctatttctatagtaaatgataaaataaag 16210978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 42215124 - 42215085
Alignment:
Q  190 agagtttatgtaaataagatgaaaacaacttatgaacatg 229  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  42215124 agagcttatgtaaataagctgaaaacaacttatgaacatg 42215085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 151
Target Start/End: Original strand, 8216787 - 8216853
Alignment:
Q  85 cttatagcataaccacttattatgataagcacttttgtataagttatttctataataaaaaataaaa 151  Q
    |||||||||||| ||||||| ||||||| ||||| ||||||||  |||| ||||| |||| ||||||    
T  8216787 cttatagcataaacacttatcatgataaacacttatgtataagccatttatataacaaaagataaaa 8216853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 14956476 - 14956426
Alignment:
Q  77 atttgcagcttatagcataaccacttattatgataagcacttttgtataag 127  Q
    ||||||||||||||||| || | ||||| ||||||||||||| ||||||||    
T  14956476 atttgcagcttatagcacaatcgcttatcatgataagcacttatgtataag 14956426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 156
Target Start/End: Complemental strand, 3537172 - 3537123
Alignment:
Q  107 tgataagcacttttgtataagttatttctataataaaaaataaaataaag 156  Q
    |||||||||||||||||||||  |||||||||  |||| |||||||||||    
T  3537172 tgataagcacttttgtataagcaatttctatagcaaaagataaaataaag 3537123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 37353419 - 37353346
Alignment:
Q  77 atttgcagcttatagcataaccacttattatgataagcacttttgtataagttatttctataataaaaaataaa 150  Q
    ||||||||||||||||||||   ||||| ||||||||| ||| |||| ||  ||||||||||| |||| |||||    
T  37353419 atttgcagcttatagcataaatgcttatgatgataagcgcttatgtacaaactatttctataacaaaagataaa 37353346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 43053708 - 43053647
Alignment:
Q  78 tttgcagcttatagcataaccacttattatgataagcacttttgtataagttatttctataa 139  Q
    ||||||||||||||||||| | |||||  |||||| || || ||| ||||||||||||||||    
T  43053708 tttgcagcttatagcataaacgcttatcgtgataaacatttatgtgtaagttatttctataa 43053647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 779092 - 779064
Alignment:
Q  201 aaataagatgaaaacaacttatgaacatg 229  Q
    |||||||||||||||||||||||||||||    
T  779092 aaataagatgaaaacaacttatgaacatg 779064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 1470984 - 1470948
Alignment:
Q  120 tgtataagttatttctataataaaaaataaaataaag 156  Q
    |||||||| |||||||||||||||| |||||||||||    
T  1470984 tgtataagctatttctataataaaagataaaataaag 1470948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 4558740 - 4558776
Alignment:
Q  120 tgtataagttatttctataataaaaaataaaataaag 156  Q
    |||||||| |||||||||||||||| |||||||||||    
T  4558740 tgtataagctatttctataataaaagataaaataaag 4558776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 28769395 - 28769343
Alignment:
Q  176 ataagttatttttaagagtttatgtaaataagatgaaaacaacttatgaacat 228  Q
    ||||| ||||||  |||||||||| ||||||| ||||||||||||||| ||||    
T  28769395 ataagctattttggagagtttatggaaataagctgaaaacaacttatggacat 28769343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 35749737 - 35749693
Alignment:
Q  85 cttatagcataaccacttattatgataagcacttttgtataagtt 129  Q
    |||||||||||| ||||||| || ||||||| |||||||||||||    
T  35749737 cttatagcataaacacttatcataataagcatttttgtataagtt 35749693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 156
Target Start/End: Original strand, 33736747 - 33736816
Alignment:
Q  87 tatagcataaccacttattatgataagcacttttgtataagttatttctataataaaaaataaaataaag 156  Q
    |||||||||  ||||||| ||||| ||||||| |||||||||||||||||||| | || |||||||||||    
T  33736747 tatagcataggcacttatcatgatcagcacttatgtataagttatttctataacataacataaaataaag 33736816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 152
Target Start/End: Original strand, 6654509 - 6654589
Alignment:
Q  72 gcttcatttgcagcttatagcataaccacttattatgataagcacttttgtataagttatttctataataaaaaataaaat 152  Q
    |||| |||||||||||||||||| | | ||||| |  |||||  ||| |||||||||||||||||||| ||| ||||||||    
T  6654509 gcttaatttgcagcttatagcattaacgcttatcaatataagggcttatgtataagttatttctataacaaataataaaat 6654589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 17241294 - 17241255
Alignment:
Q  190 agagtttatgtaaataagatgaaaacaacttatgaacatg 229  Q
    |||||||||| ||||||| |||||||||||||||||||||    
T  17241294 agagtttatggaaataagttgaaaacaacttatgaacatg 17241255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 127
Target Start/End: Original strand, 6538406 - 6538456
Alignment:
Q  77 atttgcagcttatagcataaccacttattatgataagcacttttgtataag 127  Q
    ||||||||||||||||| || ||||||| ||||||||| ||| ||||||||    
T  6538406 atttgcagcttatagcacaagcacttataatgataagcgcttatgtataag 6538456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 31671994 - 31672047
Alignment:
Q  101 ttattatgataagcacttttgtataagttatttctataataaaaaataaaataaa 155  Q
    |||||||| ||||| ||| |||||||||||||||||||| |||| ||||||||||    
T  31671994 ttattatg-taagcgcttctgtataagttatttctataacaaaagataaaataaa 31672047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 781327 - 781363
Alignment:
Q  120 tgtataagttatttctataataaaaaataaaataaag 156  Q
    |||||||| |||||||||||||||| |||||||||||    
T  781327 tgtataagctatttctataataaaagataaaataaag 781363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 156
Target Start/End: Original strand, 2206497 - 2206568
Alignment:
Q  84 gcttatagcataaccacttattatgataagcacttttgtataagttatttctataataaaaaataaaataaag 156  Q
    ||||||||||||| | |||||  | ||||||| || |||||||||||||| ||||| |||| |||||||||||    
T  2206497 gcttatagcataagctcttatcgt-ataagcatttctgtataagttatttttataacaaaagataaaataaag 2206568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 2514644 - 2514680
Alignment:
Q  120 tgtataagttatttctataataaaaaataaaataaag 156  Q
    |||||||| |||||||||||||||| |||||||||||    
T  2514644 tgtataagctatttctataataaaagataaaataaag 2514680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 6536974 - 6537014
Alignment:
Q  189 aagagtttatgtaaataagatgaaaacaacttatgaacatg 229  Q
    ||||| ||||| ||||||| |||||||||||||||||||||    
T  6536974 aagagcttatggaaataagctgaaaacaacttatgaacatg 6537014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 24836327 - 24836291
Alignment:
Q  120 tgtataagttatttctataataaaaaataaaataaag 156  Q
    |||||||||||||||||||| |||| |||||||||||    
T  24836327 tgtataagttatttctataacaaaagataaaataaag 24836291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 34429818 - 34429782
Alignment:
Q  120 tgtataagttatttctataataaaaaataaaataaag 156  Q
    ||||||||||||||||||||||| | |||||||||||    
T  34429818 tgtataagttatttctataataagagataaaataaag 34429782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 17751291 - 17751226
Alignment:
Q  79 ttgcagcttatagcataaccacttattatgataagcacttttgtataagttatttctataataaaa 144  Q
    |||||||||||||||||| ||||| | ||||||||| ||| | |||||| ||||||||||||||||    
T  17751291 ttgcagcttatagcataagcacttgtaatgataagcgcttatttataagctatttctataataaaa 17751226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 30066937 - 30066876
Alignment:
Q  77 atttgcagcttatagcataaccacttattatgataagcacttttgtataagttatttctata 138  Q
    |||||||||||||||||||| | ||||| ||||||||||||| |||||||| ||||| ||||    
T  30066937 atttgcagcttatagcataagcgcttataatgataagcacttgtgtataagctatttatata 30066876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 156
Target Start/End: Original strand, 2987088 - 2987167
Alignment:
Q  77 atttgcagcttatagcataaccacttattatgataagcacttttgtataagttatttctataataaaaaataaaataaag 156  Q
    |||||||||||||| |||||    |||| ||||||||||||| | |||||| |||||||| || ||||||||||||||||    
T  2987088 atttgcagcttataacataagtgtttatcatgataagcacttatttataagctatttctacaacaaaaaataaaataaag 2987167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 2733222 - 2733298
Alignment:
Q  80 tgcagcttatagcataaccacttattatgataagcacttttgtataagttatttctataataaaaaataaaataaag 156  Q
    ||||||||||||||||| ||||| | |||||| |||||| ||||||||  |||| ||| | |||| |||||||||||    
T  2733222 tgcagcttatagcataagcacttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaag 2733298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 6364079 - 6364127
Alignment:
Q  108 gataagcacttttgtataagttatttctataataaaaaataaaataaag 156  Q
    ||||||||||| |||||||| ||||||||||| |||| |||||||||||    
T  6364079 gataagcacttatgtataagctatttctataacaaaagataaaataaag 6364127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 7694052 - 7694013
Alignment:
Q  190 agagtttatgtaaataagatgaaaacaacttatgaacatg 229  Q
    |||||||||| ||||||| |||||||||||||||||||||    
T  7694052 agagtttatggaaataagctgaaaacaacttatgaacatg 7694013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 154
Target Start/End: Complemental strand, 42641809 - 42641727
Alignment:
Q  72 gcttcatttgcagcttatagcataaccacttattatgataagcacttttgtataagttatttctataataaaaaataaaataa 154  Q
    |||| |||||||||||||  ||||| ||||||| ||||||||   || |||||||| |||||| |||| |||| |||||||||    
T  42641809 gcttaatttgcagcttattacataagcacttatcatgataagtgtttatgtataagctatttccataacaaaagataaaataa 42641727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 1203265 - 1203209
Alignment:
Q  100 cttattatgataagcacttttgtataagttatttctataataaaaaataaaataaag 156  Q
    ||||| |||| ||||| ||||||||||| ||||||||||  |||| |||||||||||    
T  1203265 cttatcatgaaaagcatttttgtataagctatttctatagcaaaacataaaataaag 1203209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 3155505 - 3155581
Alignment:
Q  80 tgcagcttatagcataaccacttattatgataagcacttttgtataagttatttctataataaaaaataaaataaag 156  Q
    |||||||||||| | || | ||||| ||||||||||  | |||||||| ||||||||||  |||| |||||||||||    
T  3155505 tgcagcttatagtacaagcgcttatcatgataagcatgtatgtataagctatttctatagcaaaagataaaataaag 3155581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 25487673 - 25487637
Alignment:
Q  120 tgtataagttatttctataataaaaaataaaataaag 156  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  25487673 tgtataagctatttctataacaaaaaataaaataaag 25487637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 29912838 - 29912886
Alignment:
Q  77 atttgcagcttatagcataaccacttattatgataagcacttttgtata 125  Q
    |||||| ||||||||||||| || |||| || |||||||||||||||||    
T  29912838 atttgctgcttatagcataagcagttatcataataagcacttttgtata 29912886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 156
Target Start/End: Original strand, 44249208 - 44249264
Alignment:
Q  100 cttattatgataagcacttttgtataagttatttctataataaaaaataaaataaag 156  Q
    ||||| |||||||||| || ||||||||||||||| |||| |||| |||||| ||||    
T  44249208 cttatcatgataagcaattatgtataagttatttcaataacaaaagataaaacaaag 44249264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 53137967 - 53138007
Alignment:
Q  106 atgataagcacttttgtataagttatttctataataaaaaa 146  Q
    ||||||||| ||| |||||||||||||||||||| ||||||    
T  53137967 atgataagcgcttatgtataagttatttctataaaaaaaaa 53138007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 150
Target Start/End: Complemental strand, 54392952 - 54392916
Alignment:
Q  114 cacttttgtataagttatttctataataaaaaataaa 150  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  54392952 cacttatgtataagctatttctataataaaaaataaa 54392916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 23815975 - 23816024
Alignment:
Q  100 cttattatgataagcacttttgtataagttatttctataataaaaaataa 149  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||| ||||    
T  23815975 cttatcatgataagcacttatgtataagttatttctataataaaagataa 23816024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 77 - 156
Target Start/End: Complemental strand, 30574083 - 30574006
Alignment:
Q  77 atttgcagcttatagcataaccacttattatgataagcacttttgtataagttatttctataataaaaaataaaataaag 156  Q
    |||||||||||||| ||||| || |||| ||||||||| ||| |||||||| ||||||||||  |||| |||||||||||    
T  30574083 atttgcagcttatatcataagcatttatcatgataagcgcttatgtataagctatttctata--aaaagataaaataaag 30574006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 5331184 - 5331233
Alignment:
Q  78 tttgcagcttatagcataaccacttattatgataagcacttttgtataag 127  Q
    ||||||||||||||||||| ||||||| || |||||||||| ||||||||    
T  5331184 tttgcagcttatagcataaacacttatgataataagcacttatgtataag 5331233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 29520658 - 29520609
Alignment:
Q  78 tttgcagcttatagcataaccacttattatgataagcacttttgtataag 127  Q
    ||||||||||||||||||| ||||||| || |||||||||| ||||||||    
T  29520658 tttgcagcttatagcataaacacttatcataataagcacttatgtataag 29520609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 40665329 - 40665406
Alignment:
Q  78 tttgcagcttatagcataaccacttattatgataagcacttttgtataagttatttctataataaaaaataaaataaa 155  Q
    |||||||||||||||||||   ||||| ||||||||||||| |||| ||| ||||| ||||||| || ||||| ||||    
T  40665329 tttgcagcttatagcataagttcttatcatgataagcacttctgtacaagctatttttataatagaagataaactaaa 40665406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 35127547 - 35127475
Alignment:
Q  72 gcttcatttgcagcttatagcataaccacttattatgataagcacttttgtataagttatttctataataaaa 144  Q
    ||||||||||||||||||| ||||| | ||||| ||||||||  ||| |||||| | ||||||||||| ||||    
T  35127547 gcttcatttgcagcttataccataagctcttatcatgataagtgcttatgtataggctatttctataacaaaa 35127475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 39980618 - 39980670
Alignment:
Q  77 atttgcagcttatagcataaccacttattatgataagcacttttgtataagtt 129  Q
    ||||||||||||||| | || ||||||| ||||||||||||| ||||||||||    
T  39980618 atttgcagcttataggacaaacacttatcatgataagcacttatgtataagtt 39980670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 156
Target Start/End: Complemental strand, 24235822 - 24235775
Alignment:
Q  109 ataagcacttttgtataagttatttctataataaaaaataaaataaag 156  Q
    |||||||||| |||||||||||||||||||| |||| |||| ||||||    
T  24235822 ataagcacttgtgtataagttatttctataacaaaagataatataaag 24235775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 155
Target Start/End: Complemental strand, 25447412 - 25447337
Alignment:
Q  80 tgcagcttatagcataaccacttattatgataagcacttttgtataagttatttctataataaaaaataaaataaa 155  Q
    ||||||||||| || || | ||||| |||| |||||||||||| |||  |||||||||| ||||| ||||||||||    
T  25447412 tgcagcttataacacaagcgcttatcatgagaagcacttttgtgtaaactatttctatagtaaaagataaaataaa 25447337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 156
Target Start/End: Complemental strand, 49465834 - 49465755
Alignment:
Q  77 atttgcagcttatagcataaccacttattatgataagcacttttgtataagttatttctataataaaaaataaaataaag 156  Q
    |||||||| ||||||||||| ||||||| |||| || | ||| ||| |||| ||||| ||||| |||| |||||||||||    
T  49465834 atttgcagtttatagcataatcacttatcatgagaaacgcttatgtgtaagctatttttataacaaaagataaaataaag 49465755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 229
Target Start/End: Original strand, 42745071 - 42745105
Alignment:
Q  195 ttatgtaaataagatgaaaacaacttatgaacatg 229  Q
    ||||| |||||||||||||||||||||||||||||    
T  42745071 ttatggaaataagatgaaaacaacttatgaacatg 42745105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 156
Target Start/End: Original strand, 48588609 - 48588643
Alignment:
Q  122 tataagttatttctataataaaaaataaaataaag 156  Q
    ||||||||||||||||||||||| |||||||||||    
T  48588609 tataagttatttctataataaaatataaaataaag 48588643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 20143869 - 20143901
Alignment:
Q  122 tataagttatttctataataaaaaataaaataa 154  Q
    ||||||||||||||||||||||| |||||||||    
T  20143869 tataagttatttctataataaaagataaaataa 20143901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 23269320 - 23269288
Alignment:
Q  122 tataagttatttctataataaaaaataaaataa 154  Q
    ||||||||||||||||||||||| |||||||||    
T  23269320 tataagttatttctataataaaagataaaataa 23269288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 36445858 - 36445906
Alignment:
Q  195 ttatgtaaataagatgaaaacaacttatgaacatggcgtaaacagtttc 243  Q
    ||||| ||||||||||||||||||| ||||||||| | ||| |||||||    
T  36445858 ttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttc 36445906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 48397588 - 48397624
Alignment:
Q  120 tgtataagttatttctataataaaaaataaaataaag 156  Q
    |||||||||||||| |||||||||| |||||||||||    
T  48397588 tgtataagttatttttataataaaagataaaataaag 48397624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 156
Target Start/End: Original strand, 37841897 - 37841976
Alignment:
Q  77 atttgcagcttatagcataaccacttattatgataagcacttttgtataagttatttctataataaaaaataaaataaag 156  Q
    |||||||||| ||||||||| ||||||| |||||||| |||  |||||||| |||| |||||| |||  |||||||||||    
T  37841897 atttgcagctaatagcataagcacttatcatgataagtactcatgtataagctattcctataacaaatgataaaataaag 37841976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 156
Target Start/End: Original strand, 4445599 - 4445686
Alignment:
Q  72 gcttcatttgcagcttatagcataaccacttattatgataa---gcacttttgtataagttatttctataataaaaaataaaataaag 156  Q
    |||| ||||||||||| || ||||| ||||||| |||||||   |||||| |||||| | ||||||||||| |||||||| |||||||    
T  4445599 gcttaatttgcagcttgtaacataagcacttatgatgataataagcacttatgtataggctatttctataacaaaaaatacaataaag 4445686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 15084789 - 15084862
Alignment:
Q  77 atttgcagcttatagcataaccacttattatgataagcacttttgtataagttatttctataataaaaaataaa 150  Q
    ||||| |||||||||||||| ||||||| ||||||  |  ||||||||||||| ||||| |||||||| |||||    
T  15084789 atttgtagcttatagcataaacacttataatgatacacggttttgtataagttgtttctgtaataaaagataaa 15084862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 223
Target Start/End: Complemental strand, 11893649 - 11893602
Alignment:
Q  176 ataagttatttttaagagtttatgtaaataagatgaaaacaacttatg 223  Q
    ||||| |||||| ||||||||||| ||||||| |||||||||||||||    
T  11893649 ataagctattttgaagagtttatggaaataagctgaaaacaacttatg 11893602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 155
Target Start/End: Complemental strand, 27146419 - 27146341
Alignment:
Q  77 atttgcagcttatagcataaccacttattatgataagcacttttgtataagttatttctataataaaaaataaaataaa 155  Q
    ||||||||||||||||||||  || ||| |||||||||  || |||||||| |||||||| |  |||| ||||||||||    
T  27146419 atttgcagcttatagcataagtacatatcatgataagcgtttatgtataaggtatttctacagcaaaagataaaataaa 27146341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 127
Target Start/End: Original strand, 38247342 - 38247392
Alignment:
Q  77 atttgcagcttatagcataaccacttattatgataagcacttttgtataag 127  Q
    ||||||||||||||||| || ||||||| |||||| |||||| ||||||||    
T  38247342 atttgcagcttatagcacaagcacttatcatgatatgcacttatgtataag 38247392  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 10199464 - 10199411
Alignment:
Q  176 ataagttatttttaagagtttatgtaaataagatgaaaacaacttatgaacatg 229  Q
    ||||| ||||||  |||| ||||| ||||||| |||||||||||||||||||||    
T  10199464 ataagctattttagagagcttatgaaaataagctgaaaacaacttatgaacatg 10199411  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 37593740 - 37593687
Alignment:
Q  176 ataagttatttttaagagtttatgtaaataagatgaaaacaacttatgaacatg 229  Q
    ||||| |||||| ||||| ||||| ||||||| |||||||| ||||||||||||    
T  37593740 ataagctattttgaagagcttatgaaaataagctgaaaacagcttatgaacatg 37593687  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 43589589 - 43589537
Alignment:
Q  77 atttgcagcttatagcataaccacttattatgataagcacttttgtataagtt 129  Q
    |||| ||| ||||||||||| |  |||||||||||||||||| ||||||||||    
T  43589589 atttacagtttatagcataagcctttattatgataagcacttatgtataagtt 43589537  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 45234135 - 45234175
Alignment:
Q  116 cttttgtataagttatttctataataaaaaataaaataaag 156  Q
    |||||||| | |||||||||||||||||| |||||||||||    
T  45234135 cttttgtacatgttatttctataataaaagataaaataaag 45234175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 49517012 - 49517048
Alignment:
Q  120 tgtataagttatttctataataaaaaataaaataaag 156  Q
    |||||||||||||||||||| |||| |||||||||||    
T  49517012 tgtataagttatttctataacaaaagataaaataaag 49517048  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 49557083 - 49557119
Alignment:
Q  120 tgtataagttatttctataataaaaaataaaataaag 156  Q
    |||||||||||||||||||| |||| |||||||||||    
T  49557083 tgtataagttatttctataacaaaagataaaataaag 49557119  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 49692178 - 49692142
Alignment:
Q  120 tgtataagttatttctataataaaaaataaaataaag 156  Q
    ||||||||||||||||||||||||  |||||||||||    
T  49692178 tgtataagttatttctataataaaggataaaataaag 49692142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 154
Target Start/End: Complemental strand, 104276 - 104228
Alignment:
Q  106 atgataagcacttttgtataagttatttctataataaaaaataaaataa 154  Q
    ||||||| | ||| |||||||||||||||||||| ||||||||||||||    
T  104276 atgataaacgcttatgtataagttatttctataacaaaaaataaaataa 104228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 9903 - 9871
Alignment:
Q  120 tgtataagttatttctataataaaaaataaaat 152  Q
    |||||||||||||||||||| ||||||||||||    
T  9903 tgtataagttatttctataacaaaaaataaaat 9871  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 156
Target Start/End: Original strand, 27483 - 27554
Alignment:
Q  84 gcttatagcataaccacttattatgataagcacttttgtataagttatttctataataaaaaataaaataaag 156  Q
    ||||||||||||| | ||||| ||| ||||  ||| |||||||||||||||||||| | || |||||||||||    
T  27483 gcttatagcataagctcttatcatg-taagtgcttatgtataagttatttctataacagaagataaaataaag 27554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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