View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0634_low_1 (Length: 436)
Name: NF0634_low_1
Description: NF0634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0634_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 20 - 323
Target Start/End: Complemental strand, 16458720 - 16458417
Alignment:
| Q |
20 |
tttgttgtacatgttttcgatttttgtatgataatctttatggacatatttaattaaggttgccaagcaaaattattaatttatgctgagtagtaaatga |
119 |
Q |
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| T |
16458720 |
tttgttgtacatgttttcgatttttgtatgataatctttatggacatatttaattaaggttgccaagcaaaattattaatttctgctgagtagtaaatga |
16458621 |
T |
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| Q |
120 |
tgacttcacaagaaaacaaaatcaagcacaaaaaatgttaaagaagcaaaggtataggctatagctgaaataaagatgaaataccagctaatgcagaagc |
219 |
Q |
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| T |
16458620 |
tgacttcacaagaaaacaaaatcaagcacaaaaaatgttaaagaagcaaaggtataggctatagctgaaataaagatgaaataccagctaatgcagaagc |
16458521 |
T |
|
| Q |
220 |
ttcactttgtgtaagcatggcagtgaatccattaaaggcatgactgtaatggtggataagtgctatcctctcactttcttcactgcgaaaattgaaaaaa |
319 |
Q |
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| T |
16458520 |
ttcactttgtgtaagcatggcagagaatccattaaaggcatgactataatggtggataagtgctatcctctcactttcttcactgcgaaaattgaaaaaa |
16458421 |
T |
|
| Q |
320 |
gaga |
323 |
Q |
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|||| |
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| T |
16458420 |
gaga |
16458417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 192 - 310
Target Start/End: Complemental strand, 16487466 - 16487348
Alignment:
| Q |
192 |
aagatgaaataccagctaatgcagaagcttcactttgtgtaagcatggcagtgaatccattaaaggcatgactgtaatggtggataagtgctatcctctc |
291 |
Q |
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||||| ||||||||| ||||||||||||||||| ||||||||||| |||| |||||| |||| |||||| |||||||||| |||||| ||||||||| |
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| T |
16487466 |
aagatcaaataccagacaatgcagaagcttcactctgtgtaagcattgcagaaaatccactaaaagcatgattgtaatggtgaataagttttatcctctc |
16487367 |
T |
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| Q |
292 |
actttcttcactgcgaaaa |
310 |
Q |
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||||||||||||| ||||| |
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| T |
16487366 |
actttcttcactgagaaaa |
16487348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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