View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0634_low_3 (Length: 362)
Name: NF0634_low_3
Description: NF0634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0634_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 20 - 334
Target Start/End: Complemental strand, 5681612 - 5681298
Alignment:
| Q |
20 |
agtatcataggcacgtgcagcagcaataggtgttatgtaagaacctaaccaaattcttgatcttttgtttggttctctaatctctgccacccacttaccc |
119 |
Q |
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| T |
5681612 |
agtatcataagcacgtgcagcagcaataggtgttatgtaagaacctaaccaaattcttgatcttttgtttggttctctaatctctgccacccacttaccc |
5681513 |
T |
|
| Q |
120 |
cactttctcatccttattcctctatatggtttcatagcnnnnnnnnnnnnnnncatccccttattgttattgttatttttatgatctatagctatagggc |
219 |
Q |
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| T |
5681512 |
cactttctcatccttattcctctatatggtttcatagcttttttctcttttttcatccccttattgttattgttatttttatgatctatagctatagggc |
5681413 |
T |
|
| Q |
220 |
tattggatgttcttgaattcatcgaacaacaatattccctatcttcttcttccataccctacctacctaatacctatcatgtaactaattaaactatata |
319 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5681412 |
tattggttgttcttgaattcatcgaacaacaatattccctatcttcttcttccataccctacctacctaatacctatcatgtaactaattaaactatata |
5681313 |
T |
|
| Q |
320 |
atatagctagttcct |
334 |
Q |
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||||||||||||||| |
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| T |
5681312 |
atatagctagttcct |
5681298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 47038402 - 47038527
Alignment:
| Q |
27 |
taggcacgtgcagcagcaataggtgttatgtaagaacctaaccaaattcttgatcttttgtttggttctctaatctctgccacccacttaccccactttc |
126 |
Q |
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| T |
47038402 |
taggcacgagcagcagctaccggagtgatgtaagaacctaaccatattcttgatcttttatttggttctcttatttctgctacccacttaccccactttc |
47038501 |
T |
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| Q |
127 |
tcatccttattcctctatatggtttc |
152 |
Q |
| |
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| T |
47038502 |
tcttccttattcctctgtatggtttc |
47038527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 32669953 - 32669905
Alignment:
| Q |
57 |
taagaacctaaccaaattcttgatcttttgtttggttctctaatctctg |
105 |
Q |
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|||||||||||||||||||||| | ||| |||||| |||||||||||| |
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| T |
32669953 |
taagaacctaaccaaattcttgttttttgatttggtgctctaatctctg |
32669905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 6026690 - 6026620
Alignment:
| Q |
60 |
gaacctaaccaaattcttgatcttttgtttggttctctaatctctgccacccacttaccccactttctcat |
130 |
Q |
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|||||||||||||||| || | |||||||||||||| ||| || || ||||| || |||||||||||||| |
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| T |
6026690 |
gaacctaaccaaattcgagaacgtttgtttggttctcgaatttcagctacccattttccccactttctcat |
6026620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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