View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0634_low_7 (Length: 247)
Name: NF0634_low_7
Description: NF0634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0634_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 129; Significance: 7e-67; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 29 - 161
Target Start/End: Complemental strand, 1091668 - 1091536
Alignment:
| Q |
29 |
atcaagaataaataattcaatgaaggattttgctttgcttttgtgataaagcaggatatgattagtttgcaagtttatatgctataatttcaaaagtatc |
128 |
Q |
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| T |
1091668 |
atcaagaataaataattcaatgaaggattttgctttgcttttgtgataaagcaggatatgattagtttgcaagtttatatgctataatttcaaaagtatt |
1091569 |
T |
|
| Q |
129 |
tgcaaaaactctgttatggcggctacaaaagcc |
161 |
Q |
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| T |
1091568 |
tgcaaaaactctgttatggcggctacaaaagcc |
1091536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 161
Target Start/End: Complemental strand, 36524225 - 36524151
Alignment:
| Q |
87 |
tgattagtttgcaagtttatatgctataatttcaaaagtatctgcaaaaactctgttatggcggctacaaaagcc |
161 |
Q |
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||||||||||||||||| ||||||||||||||||||| || | |||||||| ||| ||||||| |||||||||| |
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| T |
36524225 |
tgattagtttgcaagttcatatgctataatttcaaaactacttacaaaaactttgtgatggcggttacaaaagcc |
36524151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 60
Target Start/End: Complemental strand, 36524264 - 36524233
Alignment:
| Q |
29 |
atcaagaataaataattcaatgaaggattttg |
60 |
Q |
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| T |
36524264 |
atcaagaataaataattcaatgaaggattttg |
36524233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 29 - 161
Target Start/End: Complemental strand, 18096028 - 18095896
Alignment:
| Q |
29 |
atcaagaataaataattcaatgaaggattttgctttgcttttgtgataaag-caggatatgattagtttgcaagtttatatgctataatttcaaaagtat |
127 |
Q |
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| T |
18096028 |
atcaagaataaataattca-tgaagggtttttctttgcttttgtgataaaaacaggaattgattagtttgcaagttcatatgctataatttcaaaagtac |
18095930 |
T |
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| Q |
128 |
ctgcaaaaactctgttatggcggctacaaaagcc |
161 |
Q |
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| T |
18095929 |
ttacaaaaactttgtgatggcggctacaaaagcc |
18095896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 29 - 161
Target Start/End: Complemental strand, 18100325 - 18100193
Alignment:
| Q |
29 |
atcaagaataaataattcaatgaaggattttgctttgcttttgtgataaag-caggatatgattagtttgcaagtttatatgctataatttcaaaagtat |
127 |
Q |
| |
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||||||||||||||||||| |||||| |||| |||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
18100325 |
atcaagaataaataattca-tgaagggtttttctttgcttttgtgataaaaacaggaattgattagtttgcaagttcatatgctataatttcaaaagtac |
18100227 |
T |
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| Q |
128 |
ctgcaaaaactctgttatggcggctacaaaagcc |
161 |
Q |
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| |||||||| ||| |||||||||||||||||| |
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| T |
18100226 |
ttacaaaaactttgtgatggcggctacaaaagcc |
18100193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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