View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0635_high_10 (Length: 255)
Name: NF0635_high_10
Description: NF0635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0635_high_10 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 21 - 255
Target Start/End: Complemental strand, 6055676 - 6055447
Alignment:
| Q |
21 |
atatcattgagaggatattcaatatttttaaatcacggttcaaattttttaatttagcacatccatttatatgtaagacaaaggcaaaacttgtgttgcc |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6055676 |
atatcattgagaggatattcaatattttta-----cggttcaaattttttaatttagcacatccatttatatgtaagacaaaggtaaaacttgtgttgcc |
6055582 |
T |
|
| Q |
121 |
ttgtgcaacacttcataacttaatttcttcagaaagaannnnnnnatatggtattttcgattaaatctattgacggatctaaacaatcagcattataaag |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6055581 |
ttgtgcaacacttcataacttaatttcttcacaaataatttctttatatggtattttcgattaaatctattgacggatctaaacaatcagcattataaag |
6055482 |
T |
|
| Q |
221 |
tttacgaagacaataattatgaactcattattcaa |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
6055481 |
tttacgaagacaataattatgaactcattattcaa |
6055447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 141
Target Start/End: Complemental strand, 12895022 - 12894924
Alignment:
| Q |
43 |
tatttttaaatcacggttcaaattttttaatttagcacatccatttatatgtaagacaaaggcaaaacttgtgttgccttgtgcaacacttcataactt |
141 |
Q |
| |
|
|||||||||||| || |||| | ||||||| | ||||| ||||||| | | ||||||| | ||| ||||||||||| | |||||| ||||||||||||| |
|
|
| T |
12895022 |
tatttttaaatcgcgtttcacaatttttaagtcagcacctccatttttgtttaagacacaagcagaacttgtgttggcatgtgcagcacttcataactt |
12894924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 7103782 - 7103880
Alignment:
| Q |
43 |
tatttttaaatcacggttcaaattttttaatttagcacatccatttatatgtaagacaaaggcaaaacttgtgttgccttgtgcaacacttcataactt |
141 |
Q |
| |
|
|||||||||||| || |||| | ||||||| | ||||| ||||||| | | ||||||| | ||| ||||||||||| | |||||| ||||||||||||| |
|
|
| T |
7103782 |
tatttttaaatcgcgtttcacaatttttaagtcagcacctccatttttgtttaagacacaagcagaacttgtgttggcatgtgcagcacttcataactt |
7103880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 141
Target Start/End: Complemental strand, 8790848 - 8790750
Alignment:
| Q |
43 |
tatttttaaatcacggttcaaattttttaatttagcacatccatttatatgtaagacaaaggcaaaacttgtgttgccttgtgcaacacttcataactt |
141 |
Q |
| |
|
|||||||||||| || |||| | ||||||| | ||||| ||||||| | | ||||||| | ||| ||||||||||| | |||||| ||||||||||||| |
|
|
| T |
8790848 |
tatttttaaatcgcgtttcacaatttttaagtcagcacctccatttttgtttaagacacaagcagaacttgtgttggcatgtgcagcacttcataactt |
8790750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 38233859 - 38233957
Alignment:
| Q |
43 |
tatttttaaatcacggttcaaattttttaatttagcacatccatttatatgtaagacaaaggcaaaacttgtgttgccttgtgcaacacttcataactt |
141 |
Q |
| |
|
|||||||||||| || |||| | ||||||| | ||||| ||||||| | | ||||||| | ||| ||||||||||| | |||||| ||||||||||||| |
|
|
| T |
38233859 |
tatttttaaatcgcgtttcacaatttttaagtcagcacctccatttttgtttaagacacaagcagaacttgtgttggcatgtgcagcacttcataactt |
38233957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 141
Target Start/End: Complemental strand, 19004238 - 19004140
Alignment:
| Q |
43 |
tatttttaaatcacggttcaaattttttaatttagcacatccatttatatgtaagacaaaggcaaaacttgtgttgccttgtgcaacacttcataactt |
141 |
Q |
| |
|
|||||||||||| || |||| | ||||||| | ||||| ||||||| | | ||||||| | ||| ||||||||||| | |||||| ||||||||||||| |
|
|
| T |
19004238 |
tatttttaaatcgcgtttcacaatttttaagtcagcacctccatttttgtttaagacacaagcagaacttgtgttggcatgtgcagcacttcataactt |
19004140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 48198203 - 48198301
Alignment:
| Q |
43 |
tatttttaaatcacggttcaaattttttaatttagcacatccatttatatgtaagacaaaggcaaaacttgtgttgccttgtgcaacacttcataactt |
141 |
Q |
| |
|
|||||||||||| || |||| | ||||||| | ||||| ||||||| | | ||||||| | ||| ||||||||||| | |||||| ||||||||||||| |
|
|
| T |
48198203 |
tatttttaaatcgcgtttcacaatttttaagtcagcacctccatttttgtttaagacacaagcagaacttgtgttggcatgtgcagcacttcataactt |
48198301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 48206859 - 48206957
Alignment:
| Q |
43 |
tatttttaaatcacggttcaaattttttaatttagcacatccatttatatgtaagacaaaggcaaaacttgtgttgccttgtgcaacacttcataactt |
141 |
Q |
| |
|
|||||||||||| || |||| | ||||||| | ||||| ||||||| | | ||||||| | ||| ||||||||||| | |||||| ||||||||||||| |
|
|
| T |
48206859 |
tatttttaaatcgcgtttcacaatttttaagtcagcacctccatttttgtttaagacacaagcagaacttgtgttggcatgtgcagcacttcataactt |
48206957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 138
Target Start/End: Original strand, 23326329 - 23326401
Alignment:
| Q |
66 |
tttttaatttagcacatccatttatatgtaagacaaaggcaaaacttgtgttgccttgtgcaacacttcataa |
138 |
Q |
| |
|
||||||| | ||||| ||||||| | | ||||||| | ||| ||||||||||| | ||||||||||||||||| |
|
|
| T |
23326329 |
tttttaagtcagcacctccatttttgtttaagacacaagcagaacttgtgttggcatgtgcaacacttcataa |
23326401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3530 times since January 2019
Visitors: 4036