View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0635_high_12 (Length: 251)

Name: NF0635_high_12
Description: NF0635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0635_high_12
NF0635_high_12
[»] chr5 (12 HSPs)
chr5 (1-183)||(6055176-6055360)
chr5 (139-239)||(37274761-37274860)
chr5 (139-232)||(11438352-11438446)
chr5 (143-238)||(41064162-41064258)
chr5 (195-238)||(33750988-33751031)
chr5 (139-239)||(21776849-21776951)
chr5 (195-233)||(40434057-40434095)
chr5 (127-172)||(9751687-9751732)
chr5 (139-239)||(8367941-8368041)
chr5 (138-174)||(11465901-11465937)
chr5 (143-238)||(11957592-11957688)
chr5 (206-238)||(33847192-33847224)
[»] chr2 (18 HSPs)
chr2 (127-238)||(38876965-38877077)
chr2 (126-239)||(16670499-16670613)
chr2 (145-242)||(36565255-36565353)
chr2 (143-238)||(38876006-38876103)
chr2 (139-239)||(18249644-18249745)
chr2 (144-238)||(21903942-21904038)
chr2 (143-232)||(23834599-23834688)
chr2 (127-226)||(8237990-8238088)
chr2 (127-174)||(34404599-34404646)
chr2 (144-232)||(11102115-11102204)
chr2 (143-239)||(18250832-18250929)
chr2 (139-172)||(19684216-19684249)
chr2 (144-233)||(22293493-22293582)
chr2 (143-238)||(1902948-1903044)
chr2 (145-238)||(44366887-44366981)
chr2 (127-172)||(15749019-15749064)
chr2 (143-238)||(7577720-7577816)
chr2 (206-242)||(10355260-10355296)
[»] chr3 (27 HSPs)
chr3 (143-238)||(43930744-43930838)
chr3 (129-227)||(3190583-3190680)
chr3 (139-238)||(46610022-46610122)
chr3 (126-232)||(2011910-2012016)
chr3 (121-238)||(10615270-10615388)
chr3 (195-233)||(46596165-46596203)
chr3 (127-227)||(14826030-14826131)
chr3 (143-238)||(18704971-18705067)
chr3 (148-232)||(27318106-27318188)
chr3 (143-238)||(28208089-28208184)
chr3 (139-227)||(51116225-51116313)
chr3 (195-238)||(15093657-15093700)
chr3 (127-233)||(37975970-37976077)
chr3 (137-227)||(3207508-3207597)
chr3 (127-238)||(28206983-28207091)
chr3 (143-231)||(22256220-22256309)
chr3 (139-222)||(31835801-31835885)
chr3 (195-238)||(23545469-23545512)
chr3 (127-216)||(12072832-12072920)
chr3 (139-172)||(37977517-37977550)
chr3 (206-242)||(2011137-2011173)
chr3 (139-183)||(13439642-13439686)
chr3 (139-183)||(17261038-17261082)
chr3 (144-232)||(24842840-24842928)
chr3 (139-183)||(35434072-35434116)
chr3 (139-183)||(46597508-46597552)
chr3 (127-183)||(48044728-48044784)
[»] chr1 (14 HSPs)
chr1 (127-233)||(13917220-13917326)
chr1 (143-243)||(5560891-5560990)
chr1 (127-233)||(13916093-13916199)
chr1 (127-239)||(38741476-38741589)
chr1 (139-233)||(14625383-14625478)
chr1 (127-235)||(4488658-4488767)
chr1 (144-238)||(14626722-14626817)
chr1 (195-242)||(37193548-37193595)
chr1 (139-239)||(2273514-2273614)
chr1 (144-233)||(40372793-40372883)
chr1 (121-183)||(49201385-49201447)
chr1 (206-238)||(8930291-8930323)
chr1 (139-183)||(18458580-18458624)
chr1 (139-183)||(26097027-26097071)
[»] chr7 (10 HSPs)
chr7 (127-238)||(1830813-1830925)
chr7 (127-239)||(1831923-1832035)
chr7 (139-239)||(9553413-9553515)
chr7 (143-226)||(46459001-46459085)
chr7 (139-238)||(17763349-17763450)
chr7 (191-231)||(22718512-22718552)
chr7 (139-232)||(33767339-33767433)
chr7 (127-238)||(35891011-35891120)
chr7 (177-238)||(24436329-24436390)
chr7 (195-231)||(13772591-13772627)
[»] chr6 (13 HSPs)
chr6 (139-242)||(6000610-6000715)
chr6 (143-239)||(12322746-12322842)
chr6 (143-238)||(33485019-33485115)
chr6 (143-233)||(22058227-22058318)
chr6 (143-239)||(24914456-24914553)
chr6 (197-232)||(11424830-11424865)
chr6 (143-233)||(12321580-12321671)
chr6 (145-238)||(22056502-22056596)
chr6 (127-231)||(11425719-11425824)
chr6 (139-239)||(34762195-34762296)
chr6 (137-173)||(7313687-7313723)
chr6 (139-171)||(16129507-16129539)
chr6 (128-172)||(30953822-30953866)
[»] chr8 (9 HSPs)
chr8 (139-238)||(28574554-28574652)
chr8 (126-238)||(27164602-27164715)
chr8 (127-238)||(6105556-6105669)
chr8 (137-183)||(26711359-26711405)
chr8 (143-238)||(39810030-39810126)
chr8 (126-172)||(34901502-34901548)
chr8 (143-232)||(42348979-42349068)
chr8 (127-183)||(25653705-25653761)
chr8 (139-183)||(26537984-26538028)
[»] scaffold0040 (2 HSPs)
scaffold0040 (143-238)||(64521-64616)
scaffold0040 (143-172)||(66054-66083)
[»] chr4 (22 HSPs)
chr4 (195-238)||(2438322-2438365)
chr4 (139-238)||(21994340-21994438)
chr4 (139-238)||(43537781-43537880)
chr4 (139-238)||(29248255-29248355)
chr4 (143-233)||(17695921-17696012)
chr4 (139-233)||(20962207-20962302)
chr4 (195-242)||(43537521-43537568)
chr4 (143-238)||(34741337-34741433)
chr4 (147-226)||(46426122-46426202)
chr4 (146-238)||(50879929-50880021)
chr4 (127-226)||(20986001-20986099)
chr4 (143-239)||(55500347-55500445)
chr4 (137-183)||(27450096-27450142)
chr4 (195-233)||(37421850-37421888)
chr4 (195-233)||(51754147-51754185)
chr4 (142-183)||(32681716-32681757)
chr4 (139-172)||(51752696-51752729)
chr4 (139-172)||(54555362-54555395)
chr4 (139-179)||(12352463-12352503)
chr4 (127-183)||(22272931-22272987)
chr4 (143-238)||(29249653-29249749)
chr4 (139-183)||(34318637-34318680)
[»] scaffold0129 (1 HSPs)
scaffold0129 (127-239)||(37334-37446)
[»] scaffold0250 (1 HSPs)
scaffold0250 (143-238)||(11512-11608)
[»] scaffold0210 (1 HSPs)
scaffold0210 (191-238)||(16685-16732)
[»] scaffold0024 (1 HSPs)
scaffold0024 (139-227)||(139143-139234)
[»] scaffold0093 (1 HSPs)
scaffold0093 (195-233)||(8996-9034)
[»] scaffold0227 (1 HSPs)
scaffold0227 (197-238)||(24881-24922)


Alignment Details
Target: chr5 (Bit Score: 124; Significance: 7e-64; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 6055360 - 6055176
Alignment:
Q  1 aaagttagaatccctttgttattatttcnnnnnnnagacaagaatcactttatcattaaaa-atttaaatttgtatcaattttgtttttctttattcaaa 99  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6055360 aaagttagaatccctttgttattatttatttttttagacaagaatcactttatcattaaaagatttaaatttgtatcaattttgtttttctttattcaaa 6055261  T
Q  100 tcatagtatttacttattacatttttaggttaatacggtttta-ccccctgtaatatatgacacttttggttttccgtcctgtaa 183  Q
    |||||||||||||||||||||||||| |||||||| | ||||| |||||||||||||| ||||||||||||||||| ||||||||    
T  6055260 tcatagtatttacttattacatttttgggttaataggattttacccccctgtaatataggacacttttggttttccctcctgtaa 6055176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 239
Target Start/End: Original strand, 37274761 - 37274860
Alignment:
Q  139 tttaccccctgtaatatatgacacttttggttttccgtcctgtaacttcttgtttaagattccatcattgtaaaataaagattcttcaggattgctccct 238  Q
    |||||||||| ||||||| |  |||||||||||| |  ||||||| || || |||  |||||| || |||||||||||||||||||||||||||| ||||    
T  37274761 tttaccccctataatatagggtacttttggttttgccccctgtaattttttttttt-gattccgtccttgtaaaataaagattcttcaggattgccccct 37274859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 232
Target Start/End: Original strand, 11438352 - 11438446
Alignment:
Q  139 tttaccccctgtaatatatgacacttttggttttccgtcctgtaacttcttgttta-agattccatcattgtaaaataaagattcttcaggattg 232  Q
    |||||||||||||||||| |  |||||||||||| |  ||||||| || || |||  ||||||| ||  ||||||||||||||||||||||||||    
T  11438352 tttaccccctgtaatatagggtacttttggttttgctccctgtaaatttttttttttagattccgtccatgtaaaataaagattcttcaggattg 11438446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 238
Target Start/End: Original strand, 41064162 - 41064258
Alignment:
Q  143 ccccctgtaatatatgacacttttggttttccgtcctgtaac-ttcttgtttaagattccatcattgtaaaataaagattcttcaggattgctccct 238  Q
    |||||||||||||| | ||||||||||||| |  |||||||  || || ||| ||||||| || ||||||||| ||||||||||| |||||| ||||    
T  41064162 ccccctgtaatatagggcacttttggttttgccccctgtaaaattttttttttagattccgtccttgtaaaatgaagattcttcaagattgccccct 41064258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 33750988 - 33751031
Alignment:
Q  195 agattccatcattgtaaaataaagattcttcaggattgctccct 238  Q
    ||||||| || |||||||||||||||||||||||||||| ||||    
T  33750988 agattccgtccttgtaaaataaagattcttcaggattgccccct 33751031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 239
Target Start/End: Complemental strand, 21776951 - 21776849
Alignment:
Q  139 tttacccc-ctgtaatatatgacacttttggttttccgtcctgtaacttcttgttta-agattccatcattgtaaaataaagattcttcaggattgctcc 236  Q
    |||||||| |||||||||| | ||||||||||||| |  ||||||| || || |||  ||||||| || ||||||||| ||||||||||| |||||| ||    
T  21776951 tttacccctctgtaatatagggcacttttggttttgccccctgtaaatttttttttttagattccgtccttgtaaaatgaagattcttcaagattgcccc 21776852  T
Q  237 cta 239  Q
    |||    
T  21776851 cta 21776849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 233
Target Start/End: Original strand, 40434057 - 40434095
Alignment:
Q  195 agattccatcattgtaaaataaagattcttcaggattgc 233  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  40434057 agattccgtccttgtaaaataaagattcttcaggattgc 40434095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 9751732 - 9751687
Alignment:
Q  127 ggttaatacggttttaccccctgtaatatatgacacttttggtttt 172  Q
    |||||||| | ||||||||||||||||||| | |||||||||||||    
T  9751732 ggttaataggcttttaccccctgtaatataggtcacttttggtttt 9751687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 239
Target Start/End: Complemental strand, 8368041 - 8367941
Alignment:
Q  139 tttaccccctgtaatatatgacacttttggttttccgtcctgtaacttcttgtttaagattccatcattgtaaaataaagattcttcaggattgctccct 238  Q
    ||||||| ||||| ||||   ||||||||||||| | || ||||| || || ||| | ||||| || ||||||||| ||||||||||| |||||| ||||    
T  8368041 tttaccctctgtagtatagagcacttttggttttgcttcttgtaatttttttttttaaattccgtccttgtaaaatgaagattcttcacgattgccccct 8367942  T
Q  239 a 239  Q
    |    
T  8367941 a 8367941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 11465901 - 11465937
Alignment:
Q  138 ttttaccccctgtaatatatgacacttttggttttcc 174  Q
    |||||||||||| |||||||| |||||||||||||||    
T  11465901 ttttaccccctgcaatatatgtcacttttggttttcc 11465937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 11957688 - 11957592
Alignment:
Q  143 ccccctgtaatatatgacacttttggttttccgtcctgt-aacttcttgtttaagattccatcattgtaaaataaagattcttcaggattgctccct 238  Q
    |||||||||||||| | ||||||||||||| |  ||||| || || || ||| ||||||| || ||||||||| | ||||||||| |||||| ||||    
T  11957688 ccccctgtaatatagggcacttttggttttgccccctgtaaaattttttttttagattccgtccttgtaaaatgacgattcttcaagattgccccct 11957592  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 238
Target Start/End: Original strand, 33847192 - 33847224
Alignment:
Q  206 ttgtaaaataaagattcttcaggattgctccct 238  Q
    |||||||||||||||||||||||||||| ||||    
T  33847192 ttgtaaaataaagattcttcaggattgccccct 33847224  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 127 - 238
Target Start/End: Complemental strand, 38877077 - 38876965
Alignment:
Q  127 ggttaatacggttttaccccctgtaatatatgacacttttggttttccgtcctgt-aacttcttgtttaagattccatcattgtaaaataaagattcttc 225  Q
    |||||||| || |||||||||||||||||| | ||||||||||||||| |||||| || || || ||| ||||||| || ||||||||||||||||||||    
T  38877077 ggttaatagggctttaccccctgtaatataaggcacttttggttttccttcctgtaaatttttttttttagattccgtccttgtaaaataaagattcttc 38876978  T
Q  226 aggattgctccct 238  Q
    | |||||| ||||    
T  38876977 aagattgccccct 38876965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 239
Target Start/End: Original strand, 16670499 - 16670613
Alignment:
Q  126 aggttaatacggttttaccccctgtaatatatgacacttttggttttccgtcctgtaacttcttgttta-agattccatcattgtaaaataaagattctt 224  Q
    ||||||||| |  |||||||||||||||||| | ||||||||||||| |  ||||||| || || |||  ||||||| |||||||||||| |||||||||    
T  16670499 aggttaataggtctttaccccctgtaatatagggcacttttggttttgccccctgtaattttttttttttagattccgtcattgtaaaatgaagattctt 16670598  T
Q  225 caggattgctcccta 239  Q
    || |||||| |||||    
T  16670599 cacgattgcccccta 16670613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 242
Target Start/End: Original strand, 36565255 - 36565353
Alignment:
Q  145 ccctgtaatatatgacacttttggttttccgtcctgtaacttcttg-tttaagattccatcattgtaaaataaagattcttcaggattgctccctatgc 242  Q
    ||||||||||||  ||||||||||||||||  ||||||| || ||  ||| ||||||| || |||||||||||||||||||||||||||| || |||||    
T  36565255 ccctgtaatataaaacacttttggttttcctccctgtaaattttttattttagattccgtccttgtaaaataaagattcttcaggattgccccatatgc 36565353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 238
Target Start/End: Original strand, 38876006 - 38876103
Alignment:
Q  143 ccccctgtaatatatgacacttttggttttccgtcctgtaacttcttgttta--agattccatcattgtaaaataaagattcttcaggattgctccct 238  Q
    |||||||||||||| ||||||||||||||| |  ||||||| || || |||   ||||||| || ||||||||||||||||||||| |||||| ||||    
T  38876006 ccccctgtaatataggacacttttggtttttccccctgtaaattttttttttttagattccgtccttgtaaaataaagattcttcaagattgccccct 38876103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 239
Target Start/End: Original strand, 18249644 - 18249745
Alignment:
Q  139 tttaccccct-gtaatatatgacacttttggttttccgtcctgtaacttcttgtttaagattccatcattgtaaaataaagattcttcaggattgctccc 237  Q
    |||||||||| |||||||||| |||||||||||||   |||||||| || || ||| ||||||  || ||||||||| ||||||||||| |||||| |||    
T  18249644 tttacccccttgtaatatatggcacttttggttttgtctcctgtaaattttttttttagattctgtccttgtaaaatgaagattcttcacgattgccccc 18249743  T
Q  238 ta 239  Q
    ||    
T  18249744 ta 18249745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 238
Target Start/End: Original strand, 21903942 - 21904038
Alignment:
Q  144 cccctgtaatatatgacacttttggttttccgtcctgtaacttcttgttta--agattccatcattgtaaaataaagattcttcaggattgctccct 238  Q
    ||||||||||||| | |||||||||||||||  ||||||| || || |||   ||||||| || ||||||||||||||||||||| |||||| ||||    
T  21903942 cccctgtaatatagggcacttttggttttcccccctgtaaattttttttttttagattccgtccttgtaaaataaagattcttcaagattgccccct 21904038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 232
Target Start/End: Original strand, 23834599 - 23834688
Alignment:
Q  143 ccccctgtaatatatgacacttttggttttccgtcctgtaacttcttgtttaagattccatcattgtaaaataaagattcttcaggattg 232  Q
    |||||||||||||| | ||||||||||||| |  ||||||| || || ||| ||||||| || ||||||||| ||||||||||| |||||    
T  23834599 ccccctgtaatatagggcacttttggttttgccccctgtaatttttttttttagattccgtccttgtaaaatgaagattcttcacgattg 23834688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 226
Target Start/End: Original strand, 8237990 - 8238088
Alignment:
Q  127 ggttaatacggttttaccccctgtaatatatgacacttttggttttccgtcctgtaacttcttgtttaagattccatcattgtaaaataaagattcttca 226  Q
    ||||||||  |||||||||| |||||||||  |||||||||||||| |  ||||||| || || ||| ||||||  || |||||||||||||||||||||    
T  8237990 ggttaatagtgttttaccccatgtaatatagaacacttttggttttgccccctgtaa-ttttttttttagattcggtccttgtaaaataaagattcttca 8238088  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 34404646 - 34404599
Alignment:
Q  127 ggttaatacggttttaccccctgtaatatatgacacttttggttttcc 174  Q
    |||||||| | ||||||||||||||||||||| |||||||||||||||    
T  34404646 ggttaataggcttttaccccctgtaatatatgtcacttttggttttcc 34404599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 11102204 - 11102115
Alignment:
Q  144 cccctgtaatatatgacacttttggttttccg-tcctgtaacttcttgtttaagattccatcattgtaaaataaagattcttcaggattg 232  Q
    ||||||||||||| |  ||||||||||||||  |||||||| || || ||| ||||||| || || |||||||||||||||||| |||||    
T  11102204 cccctgtaatatagggtacttttggttttcccctcctgtaatttttttttttagattccgtccttttaaaataaagattcttcaagattg 11102115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 239
Target Start/End: Complemental strand, 18250929 - 18250832
Alignment:
Q  143 ccccctgtaatatatgacacttttggttttccgtcctgtaacttcttgttta-agattccatcattgtaaaataaagattcttcaggattgctcccta 239  Q
    |||||||||||||| | || |||||||||| | |||||||| || || |||  ||||||| || ||||||||| ||||||||||| ||||| ||||||    
T  18250929 ccccctgtaatatagggcatttttggttttgcctcctgtaattttttttttttagattccgtccttgtaaaatgaagattcttcacgattgttcccta 18250832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 172
Target Start/End: Original strand, 19684216 - 19684249
Alignment:
Q  139 tttaccccctgtaatatatgacacttttggtttt 172  Q
    ||||||||||||||||||||||||||||||||||    
T  19684216 tttaccccctgtaatatatgacacttttggtttt 19684249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 233
Target Start/End: Complemental strand, 22293582 - 22293493
Alignment:
Q  144 cccctgtaatatatgacacttttggttttccgtcctgtaacttcttgtttaagattccatcattgtaaaataaagattcttcaggattgc 233  Q
    ||||||||||||| | ||||||| ||||| |  ||||||| || || ||| ||||||  || |||||||||||||||||||||| |||||    
T  22293582 cccctgtaatataaggcactttttgtttttccccctgtaaattttttttttagattcggtccttgtaaaataaagattcttcagtattgc 22293493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 238
Target Start/End: Original strand, 1902948 - 1903044
Alignment:
Q  143 ccccctgtaatatatgacacttttggttttccgtcctgtaac-ttcttgtttaagattccatcattgtaaaataaagattcttcaggattgctccct 238  Q
    |||||||||||||| | ||||||||||||| |  |||||||  || || ||| ||||||| || ||||||||| ||||||||||| |||||| ||||    
T  1902948 ccccctgtaatatagggcacttttggttttgccccctgtaaaattttttttttagattccgtccttgtaaaatgaagattcttcaagattgccccct 1903044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 238
Target Start/End: Original strand, 44366887 - 44366981
Alignment:
Q  145 ccctgtaatatatgacacttttggttttccgtcctgtaacttcttgttta-agattccatcattgtaaaataaagattcttcaggattgctccct 238  Q
    |||||||||||| | ||||||||||||| |  ||||||| || || |||  ||||||| || ||||||||| ||||||||||| |||||| ||||    
T  44366887 ccctgtaatatagggcacttttggttttgccccctgtaaatttttttttttagattccgtccttgtaaaatgaagattcttcaagattgccccct 44366981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 15749064 - 15749019
Alignment:
Q  127 ggttaatacggttttaccccctgtaatatatgacacttttggtttt 172  Q
    |||||||| | ||||| ||||||||||||||| |||||||||||||    
T  15749064 ggttaataggcttttatcccctgtaatatatgtcacttttggtttt 15749019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 7577816 - 7577720
Alignment:
Q  143 ccccctgtaatatatgacacttttggttttccgtcctgt-aacttcttgtttaagattccatcattgtaaaataaagattcttcaggattgctccct 238  Q
    |||||||||||||| | ||||||||||||| |  ||||| || || || ||| ||||||| || ||||||||| ||||||| ||| |||||| ||||    
T  7577816 ccccctgtaatatagggcacttttggttttaccccctgtaaatttttttttttagattccgtccttgtaaaatgaagattcatcaagattgccccct 7577720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 10355296 - 10355260
Alignment:
Q  206 ttgtaaaataaagattcttcaggattgctccctatgc 242  Q
    |||||||||||||||||||||||||||  ||||||||    
T  10355296 ttgtaaaataaagattcttcaggattgtcccctatgc 10355260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 43930838 - 43930744
Alignment:
Q  143 ccccctgtaatatatgacacttttggttttccgtcctgtaacttcttgtttaagattccatcattgtaaaataaagattcttcaggattgctccct 238  Q
    |||| ||||||||||||||||||||||| |||  ||||||| || || ||| |||||||||| ||||||||||||||||||||| |||||| ||||    
T  43930838 ccccttgtaatatatgacacttttggttctccc-cctgtaatttttttttttagattccatccttgtaaaataaagattcttcaagattgccccct 43930744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 227
Target Start/End: Complemental strand, 3190680 - 3190583
Alignment:
Q  129 ttaatacggttttaccccctgtaatatatgacacttttggttttccgtcctgtaacttcttgtttaagattccatcattgtaaaataaagattcttcag 227  Q
    ||||||| |||||||||||||||||||| | |||||||||||||  | ||||||| || || ||| |||||||  | ||||||||||||||||||||||    
T  3190680 ttaatactgttttaccccctgtaatataggccacttttggtttt-ggacctgtaatttttttttttagattccgcccttgtaaaataaagattcttcag 3190583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 238
Target Start/End: Original strand, 46610022 - 46610122
Alignment:
Q  139 tttaccccctgtaatatatgacacttttggttttccgtcctgtaacttcttgttta-agattccatcattgtaaaataaagattcttcaggattgctccc 237  Q
    |||||||||||||||||| | ||||||||||||| |  ||||||| || || |||  ||||||| || ||||||||| ||||||||||| ||||||||||    
T  46610022 tttaccccctgtaatatagggcacttttggttttgccccctgtaattttttttttttagattccgtccttgtaaaatgaagattcttcaagattgctccc 46610121  T
Q  238 t 238  Q
    |    
T  46610122 t 46610122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 232
Target Start/End: Complemental strand, 2012016 - 2011910
Alignment:
Q  126 aggttaatacggttttaccccctgtaatatatgacacttttggttttccgtcctgtaacttcttgttta-agattccatcattgtaaaataaagattctt 224  Q
    |||||||||  |||||| ||||| ||||||||| || ||||||||||||  ||||||| || || |||  |||||| ||| |||||||||||||||||||    
T  2012016 aggttaatagagttttatcccctataatatatggcatttttggttttccc-cctgtaattttttttttttagattctatccttgtaaaataaagattctt 2011918  T
Q  225 caggattg 232  Q
    ||||||||    
T  2011917 caggattg 2011910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 238
Target Start/End: Original strand, 10615270 - 10615388
Alignment:
Q  121 tttttaggttaatacggttttaccccctgtaatatatgacacttttggttttccgtcctgt-aacttcttgtttaagattccatcattgtaaaataaaga 219  Q
    ||||| |||||||| |  |||||||||||||||||| | ||||||||||||| |  ||||| || || || ||| ||||||| || ||||||||| ||||    
T  10615270 ttttttggttaataggtctttaccccctgtaatatagggcacttttggttttgccccctgtaaatttttttttttagattccgtccttgtaaaatgaaga 10615369  T
Q  220 ttcttcaggattgctccct 238  Q
    ||||||| |||||| ||||    
T  10615370 ttcttcaagattgccccct 10615388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 195 - 233
Target Start/End: Original strand, 46596165 - 46596203
Alignment:
Q  195 agattccatcattgtaaaataaagattcttcaggattgc 233  Q
    |||||||||||||||||||||||||||||||||||||||    
T  46596165 agattccatcattgtaaaataaagattcttcaggattgc 46596203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 227
Target Start/End: Complemental strand, 14826131 - 14826030
Alignment:
Q  127 ggttaatacggttttaccccctgtaatatatgacacttttggttttccgtcctgt-aacttcttgtttaagattccatcattgtaaaataaagattcttc 225  Q
    ||||||||  ||||||||||||||||||| || ||||||||||||| |  ||||| || |  || ||| ||||||| || ||||||||||||||||||||    
T  14826131 ggttaatagtgttttaccccctgtaatatttgtcacttttggttttgccccctgtaaaatattttttttagattccgtccttgtaaaataaagattcttc 14826032  T
Q  226 ag 227  Q
    ||    
T  14826031 ag 14826030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 238
Target Start/End: Original strand, 18704971 - 18705067
Alignment:
Q  143 ccccctgtaatatatgacacttttggttttccgtcctgtaacttcttgttta-agattccatcattgtaaaataaagattcttcaggattgctccct 238  Q
    ||||| |||||||| | |||||||||||||||  ||||||| || || |||  ||||||| || |||| ||||||||||||||||||||||| ||||    
T  18704971 cccccagtaatatagggcacttttggttttcccccctgtaaatttttttttttagattccttccttgtcaaataaagattcttcaggattgccccct 18705067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 27318106 - 27318188
Alignment:
Q  148 tgtaatatatgacacttttggttttccgtcctgtaacttcttgtttaagattccatcattgtaaaataaagattcttcaggattg 232  Q
    ||||||||| |||||||||||||||||  ||||||| || || | ||||||||  || |||||||||||||||||||||||||||    
T  27318106 tgtaatataagacacttttggttttccc-cctgtaatttttt-tgtaagattctgtctttgtaaaataaagattcttcaggattg 27318188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 28208184 - 28208089
Alignment:
Q  143 ccccctgtaatatatgacacttttggttttccgtcctgtaacttcttgttta-agattccatcattgtaaaataaagattcttcaggattgctccct 238  Q
    |||||||||||||| | |||||||||||||||  ||||||| || || |||  ||||||| || ||||||||||||||||||||| |||||| ||||    
T  28208184 ccccctgtaatatagggcacttttggttttccc-cctgtaattttttttttttagattccgtccttgtaaaataaagattcttcaagattgccccct 28208089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 227
Target Start/End: Original strand, 51116225 - 51116313
Alignment:
Q  139 tttaccccctgtaatatatgacacttttggttttccgtcctgtaacttcttgtttaagattccatcattgtaaaataaagattcttcag 227  Q
    |||||||||||||||||||| || |||| ||||| | |||||||| |  || ||| ||||||  || ||||||||||||||||||||||    
T  51116225 tttaccccctgtaatatatggcaattttagttttgcctcctgtaaatattttttttagattcagtccttgtaaaataaagattcttcag 51116313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 15093700 - 15093657
Alignment:
Q  195 agattccatcattgtaaaataaagattcttcaggattgctccct 238  Q
    |||||||||| |||||||||||||||||||||||||||| ||||    
T  15093700 agattccatccttgtaaaataaagattcttcaggattgccccct 15093657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 233
Target Start/End: Original strand, 37975970 - 37976077
Alignment:
Q  127 ggttaatacggttttacccc-ctgtaatatatgacacttttggttttccgtcctgtaacttcttgtttaagattccatcattgtaaaataaagattcttc 225  Q
    ||||||||  |||||||||| |||||||||| |  |||||||||||| |  ||| ||| || || ||| ||||||| || |||||||||||||||||| |    
T  37975970 ggttaatagagttttacccccctgtaatatagggtacttttggttttgccccctataaattttttttttagattccgtccttgtaaaataaagattctcc 37976069  T
Q  226 aggattgc 233  Q
    ||||||||    
T  37976070 aggattgc 37976077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 3207597 - 3207508
Alignment:
Q  137 gttttaccccctgtaatatatgacacttttggttttccgtcctgtaacttcttgtttaagattccatcattgtaaaataaagattcttcag 227  Q
    |||||||||||||||||||| | |||||||||||||  | ||||||| || || ||| ||||||   | ||||||||||||||||||||||    
T  3207597 gttttaccccctgtaatataggccacttttggtttt-ggccctgtaaattttttttttagattctgcccttgtaaaataaagattcttcag 3207508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 238
Target Start/End: Original strand, 28206983 - 28207091
Alignment:
Q  127 ggttaatacggttttaccc-cctgtaatatatgacacttttggttttccgtcctgtaacttcttgtttaagattccatcattgtaaaataaagattcttc 225  Q
    |||||||| || ||||||| ||||||||||| | |||||||||||||||  ||||||| || || ||| ||||||   | ||||||||||||||||||||    
T  28206983 ggttaatagggctttaccctcctgtaatatagggcacttttggttttcccccctgtaaatt-tttttttagattc---cgttgtaaaataaagattcttc 28207078  T
Q  226 aggattgctccct 238  Q
    | |||||| ||||    
T  28207079 aagattgccccct 28207091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 231
Target Start/End: Original strand, 22256220 - 22256309
Alignment:
Q  143 ccccctgtaatatatgacacttttggttttccgtcctgt-aacttcttgtttaagattccatcattgtaaaataaagattcttcaggatt 231  Q
    |||||||||||||||||||||||||||||| |  ||||| ||  | || ||| ||||||| || ||||||||| ||||||||||| ||||    
T  22256220 ccccctgtaatatatgacacttttggttttgccccctgtaaaactatttttttagattccgtccttgtaaaatgaagattcttcacgatt 22256309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 31835885 - 31835801
Alignment:
Q  139 tttaccccctgtaatatatgacacttttggttttccgtcctgtaactt-cttgtttaagattccatcattgtaaaataaagattc 222  Q
    ||||||||||||||||||||||||||||| |||| |  ||||||| ||  || ||| ||||| | || |||||||||||||||||    
T  31835885 tttaccccctgtaatatatgacacttttgattttgccccctgtaatttattttttttagatttcgtcgttgtaaaataaagattc 31835801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 23545512 - 23545469
Alignment:
Q  195 agattccatcattgtaaaataaagattcttcaggattgctccct 238  Q
    |||||||||||| ||||||| |||||||||||||||||| ||||    
T  23545512 agattccatcatcgtaaaatgaagattcttcaggattgccccct 23545469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 216
Target Start/End: Complemental strand, 12072920 - 12072832
Alignment:
Q  127 ggttaatacggttttaccccctgtaatatatgacacttttggttttccgtcctgtaacttcttgtttaagattccatcattgtaaaataa 216  Q
    ||||||||  ||||||||||| |||||||| | ||||||||||||| |   |||||| || || ||| ||||||| ||||||||||||||    
T  12072920 ggttaataatgttttaccccccgtaatataggtcacttttggttttgcccgctgtaaatt-ttcttttagattccgtcattgtaaaataa 12072832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 172
Target Start/End: Complemental strand, 37977550 - 37977517
Alignment:
Q  139 tttaccccctgtaatatatgacacttttggtttt 172  Q
    |||||||||||||||||| |||||||||||||||    
T  37977550 tttaccccctgtaatataggacacttttggtttt 37977517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 2011137 - 2011173
Alignment:
Q  206 ttgtaaaataaagattcttcaggattgctccctatgc 242  Q
    |||||||||||||||||||||||||||| | ||||||    
T  2011137 ttgtaaaataaagattcttcaggattgccctctatgc 2011173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 13439642 - 13439686
Alignment:
Q  139 tttaccccctgtaatatatgacacttttggttttccgtcctgtaa 183  Q
    |||||||||||||||||| | || ||| |||||||||||||||||    
T  13439642 tttaccccctgtaatataggtcattttcggttttccgtcctgtaa 13439686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 17261038 - 17261082
Alignment:
Q  139 tttaccccctgtaatatatgacacttttggttttccgtcctgtaa 183  Q
    |||||||||||||||||| | || |||||||||||| ||||||||    
T  17261038 tttaccccctgtaatataggtcatttttggttttccctcctgtaa 17261082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 24842840 - 24842928
Alignment:
Q  144 cccctgtaatatatgacacttttggttttccgtcctgtaacttcttgtttaagattccatcattgtaaaataaagattcttcaggattg 232  Q
    |||||||||||||   |||||||||||||    ||||||| || || ||| |||||||| | ||| ||||| |||||||||||||||||    
T  24842840 cccctgtaatatagtgcacttttggttttagcccctgtaatttttttttttagattccacccttgaaaaatgaagattcttcaggattg 24842928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 35434116 - 35434072
Alignment:
Q  139 tttaccccctgtaatatatgacacttttggttttccgtcctgtaa 183  Q
    |||||||||||||||||| | || |||||||||||| ||||||||    
T  35434116 tttaccccctgtaatataggtcatttttggttttccctcctgtaa 35434072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 46597552 - 46597508
Alignment:
Q  139 tttaccccctgtaatatatgacacttttggttttccgtcctgtaa 183  Q
    |||||||||||||||||| | ||||||||||||| | ||||||||    
T  46597552 tttaccccctgtaatatagggcacttttggttttgcctcctgtaa 46597508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 48044784 - 48044728
Alignment:
Q  127 ggttaatacggttttaccccctgtaatatatgacacttttggttttccgtcctgtaa 183  Q
    |||||||| | |||||||||||| |||||| | || |||||||||||| ||||||||    
T  48044784 ggttaataggcttttaccccctgcaatataagtcatttttggttttccctcctgtaa 48044728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 127 - 233
Target Start/End: Complemental strand, 13917326 - 13917220
Alignment:
Q  127 ggttaatacggttttaccccctgtaatatatgacacttttggttttccgtcctgtaacttcttgtttaagattccatcattgtaaaataaagattcttca 226  Q
    ||||||||  |||||| ||||||||||||| ||||||||||||||||   ||||||| || |  ||| ||||||| || |||||||||||||||||||||    
T  13917326 ggttaatagagttttatcccctgtaatataggacacttttggttttctcccctgtaatttttatttttagattccgtccttgtaaaataaagattcttca 13917227  T
Q  227 ggattgc 233  Q
     ||||||    
T  13917226 agattgc 13917220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 243
Target Start/End: Original strand, 5560891 - 5560990
Alignment:
Q  143 ccccctgtaatatatgacacttttggttttccgtcctgtaacttcttgtttaagattccatcattgtaaaataaagattcttcaggattgctccctatgc 242  Q
    ||||||||||||||   |||||||||||||||  ||||||| || || ||| ||||||| || ||||||||||||||||||||| |||||| ||||||||    
T  5560891 ccccctgtaatatagagcacttttggttttccc-cctgtaatttgtttttttagattccgtccttgtaaaataaagattcttcaagattgccccctatgc 5560989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 233
Target Start/End: Original strand, 13916093 - 13916199
Alignment:
Q  127 ggttaatacggttttaccccct-gtaatatatgacacttttggttttccgtcctgtaacttcttgtttaagattccatcattgtaaaataaagattcttc 225  Q
    |||||||| || |||||||||| |||||||||||||||||||||||||    |||||| || || ||| ||||||| || ||||||||||||||||||||    
T  13916093 ggttaatagggctttacccccttgtaatatatgacacttttggttttctcctctgtaa-ttttttttttagattccgtccttgtaaaataaagattcttc 13916191  T
Q  226 aggattgc 233  Q
    | ||||||    
T  13916192 aagattgc 13916199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 127 - 239
Target Start/End: Original strand, 38741476 - 38741589
Alignment:
Q  127 ggttaatacggttttaccccctgtaatatatgacacttttggttttccgtcctgt-aacttcttgtttaagattccatcattgtaaaataaagattcttc 225  Q
    ||||||||  |||||| ||||||||||||| ||||||||||||||| |  ||||| || |  || ||| ||||| |||| ||||||||||||||||||||    
T  38741476 ggttaataatgttttaacccctgtaatataagacacttttggttttgccccctgtaaaatattttttttagatttcatccttgtaaaataaagattcttc 38741575  T
Q  226 aggattgctcccta 239  Q
    || ||||| |||||    
T  38741576 agaattgcccccta 38741589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 233
Target Start/End: Original strand, 14625383 - 14625478
Alignment:
Q  139 tttaccccctgtaatatatgacacttttggttttccgtcctgt-aacttcttgtttaagattccatcattgtaaaataaagattcttcaggattgc 233  Q
    |||||||||||||||||| ||||||||||||||| |  ||||| || || || ||| ||||||| || ||||||||| ||||||||||| ||||||    
T  14625383 tttaccccctgtaatataggacacttttggttttgccccctgtaaaattttttttttagattccgtccttgtaaaatgaagattcttcaagattgc 14625478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 235
Target Start/End: Complemental strand, 4488767 - 4488658
Alignment:
Q  127 ggttaatacggttttaccccctgtaatatatgacacttttggtttt-ccgtcctgtaacttcttgtttaagattccatcattgtaaaataaagattcttc 225  Q
    ||||||||  |||||||||||| |||||||  |||||||||||||| || || |  || |  || |||||||||||||| |  |||||||||||||||||    
T  4488767 ggttaatattgttttaccccctataatatagaacacttttggttttgccctctttaaaatatttttttaagattccatcctcataaaataaagattcttc 4488668  T
Q  226 aggattgctc 235  Q
    ||||||||||    
T  4488667 aggattgctc 4488658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 238
Target Start/End: Complemental strand, 14626817 - 14626722
Alignment:
Q  144 cccctgtaatatatgacacttttggttttccgtcctgtaacttcttgttta-agattccatcattgtaaaataaagattcttcaggattgctccct 238  Q
    ||||||||||||| | ||||||||||||| | |||||||| || || |||  ||||||| || ||||||||| ||||||||||| |||||| ||||    
T  14626817 cccctgtaatatagggcacttttggttttgcctcctgtaaatttttttttttagattccgtccttgtaaaatgaagattcttcaagattgccccct 14626722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 37193548 - 37193595
Alignment:
Q  195 agattccatcattgtaaaataaagattcttcaggattgctccctatgc 242  Q
    |||||||||| ||||||||||||||||||||| |||||| ||||||||    
T  37193548 agattccatccttgtaaaataaagattcttcaagattgccccctatgc 37193595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 239
Target Start/End: Original strand, 2273514 - 2273614
Alignment:
Q  139 tttaccccctgtaatatatgacacttttggttttccgtcctgtaacttcttgttta-agattccatcattgtaaaataaagattcttcaggattgctccc 237  Q
    |||||||||||||||||| | ||||||| |||| || || ||||| || || |||  ||||||| || ||||||||| ||||||||||| ||||||||||    
T  2273514 tttaccccctgtaatatagggcactttttgtttgccctc-tgtaaatttttttttttagattccgtccttgtaaaatgaagattcttcacgattgctccc 2273612  T
Q  238 ta 239  Q
    ||    
T  2273613 ta 2273614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 233
Target Start/End: Original strand, 40372793 - 40372883
Alignment:
Q  144 cccctgtaatatatgacacttttggttttccgtcctgtaacttcttgttta-agattccatcattgtaaaataaagattcttcaggattgc 233  Q
    |||||||||||||   |||||||| |||||| |||||||| || || |||  ||||||||||  | ||||||||||||| |||||||||||    
T  40372793 cccctgtaatatagagcacttttgattttccctcctgtaattttttttttttagattccatccctttaaaataaagatttttcaggattgc 40372883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 49201447 - 49201385
Alignment:
Q  121 tttttaggttaatacggttttaccccctgtaatatatgacacttttggttttccgtcctgtaa 183  Q
    ||||| |||||||| | |||||||||||| |||||| | |||||||||||||||  |||||||    
T  49201447 tttttgggttaataggcttttaccccctgcaatataggtcacttttggttttcccccctgtaa 49201385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 238
Target Start/End: Complemental strand, 8930323 - 8930291
Alignment:
Q  206 ttgtaaaataaagattcttcaggattgctccct 238  Q
    |||||||||||||||||||||||||||| ||||    
T  8930323 ttgtaaaataaagattcttcaggattgccccct 8930291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 18458580 - 18458624
Alignment:
Q  139 tttaccccctgtaatatatgacacttttggttttccgtcctgtaa 183  Q
    |||||||||||||||||||| || ||||| |||||| ||||||||    
T  18458580 tttaccccctgtaatatatgtcatttttgattttccctcctgtaa 18458624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 26097071 - 26097027
Alignment:
Q  139 tttaccccctgtaatatatgacacttttggttttccgtcctgtaa 183  Q
    |||||||||||||||||| | ||||||||||||| | ||||||||    
T  26097071 tttaccccctgtaatataggtcacttttggttttgcctcctgtaa 26097027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 238
Target Start/End: Original strand, 1830813 - 1830925
Alignment:
Q  127 ggttaatacggttttaccccctgtaatatatgacacttttggttttccgtcctgtaacttcttgttta-agattccatcattgtaaaataaagattcttc 225  Q
    |||||||| || |||||||||||||||||| || ||||||| ||||||  | ||||| || || |||  ||||||| || ||||||||||||||||||||    
T  1830813 ggttaatagggctttaccccctgtaatataggatacttttgattttcccccttgtaaatttttttttttagattccgtctttgtaaaataaagattcttc 1830912  T
Q  226 aggattgctccct 238  Q
    | |||||||||||    
T  1830913 aagattgctccct 1830925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 127 - 239
Target Start/End: Complemental strand, 1832035 - 1831923
Alignment:
Q  127 ggttaatacggttttaccccctgtaatatatgacacttttggttttccgtcctgtaacttcttgttta-agattccatcattgtaaaataaagattcttc 225  Q
    |||||||| || |||||||||||||||||| | |||||||| ||||||  ||||||| || || |||  |||||| ||| ||||||||||||||||||||    
T  1832035 ggttaatagggctttaccccctgtaatatagggcacttttgattttccc-cctgtaaatttttttttttagattctatccttgtaaaataaagattcttc 1831937  T
Q  226 aggattgctcccta 239  Q
    | |||||| |||||    
T  1831936 aagattgcccccta 1831923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 239
Target Start/End: Original strand, 9553413 - 9553515
Alignment:
Q  139 tttaccccctgtaatatatgacacttttggttttccgtcctgtaact--tcttgtttaagattccatcattgtaaaataaagattcttcaggattgctcc 236  Q
    |||||||||||||||||| | ||||||||||||| | |||||||| |  | || ||| ||||||| || ||||||||| ||||||||||| |||||| ||    
T  9553413 tttaccccctgtaatatagggcacttttggttttgcctcctgtaaattatttttttttagattccgtccttgtaaaatgaagattcttcacgattgcccc 9553512  T
Q  237 cta 239  Q
    |||    
T  9553513 cta 9553515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 226
Target Start/End: Original strand, 46459001 - 46459085
Alignment:
Q  143 ccccctgtaatatatgacacttttggttttccgtcctgt--aacttcttgtttaagattccatcattgtaaaataaagattcttca 226  Q
    |||||||||||||||||||||||||||||| | ||||||  ||  | || ||| |||||| ||| |||||||||||||||||||||    
T  46459001 ccccctgtaatatatgacacttttggttttgcctcctgtaaaatatttttttttagattcgatc-ttgtaaaataaagattcttca 46459085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 238
Target Start/End: Original strand, 17763349 - 17763450
Alignment:
Q  139 tttacccc-ctgtaatatatgacacttttggttttccgtcctgtaac-ttcttgtttaagattccatcattgtaaaataaagattcttcaggattgctcc 236  Q
    |||||||| |||||||||| ||||||||||||||| |  |||||||  || || ||| ||||||| || ||||||||| ||||||||||| |||||| ||    
T  17763349 tttacccctctgtaatataggacacttttggttttgccccctgtaaaattttttttttagattccgtccttgtaaaatgaagattcttcaagattgcccc 17763448  T
Q  237 ct 238  Q
    ||    
T  17763449 ct 17763450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 22718552 - 22718512
Alignment:
Q  191 tttaagattccatcattgtaaaataaagattcttcaggatt 231  Q
    ||||||||| |||| ||||||||||||||||||||||||||    
T  22718552 tttaagatttcatccttgtaaaataaagattcttcaggatt 22718512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 232
Target Start/End: Complemental strand, 33767433 - 33767339
Alignment:
Q  139 tttaccccctgtaatatatgacacttttggttttccgtcctgta--acttcttgtttaagattccatcattgtaaaataaagattcttcaggattg 232  Q
    |||| ||||||||||||||||||||||||||||| |  ||||||  | || || ||| ||||||| || ||||||||| ||||||||||| |||||    
T  33767433 tttatcccctgtaatatatgacacttttggttttgc-ccctgtaatatttttttttttagattccgtctttgtaaaattaagattcttcacgattg 33767339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 238
Target Start/End: Original strand, 35891011 - 35891120
Alignment:
Q  127 ggttaatacggttttaccccctgtaatatatgacacttttggttttccgtcctgtaacttcttgtttaagattccatcattgtaaaataaagattcttca 226  Q
    ||||||||  |||||||||||||||||||| |  |||||||| ||| |   |||||| || || ||  ||||| | || |||||||||||||||||||||    
T  35891011 ggttaatagagttttaccccctgtaatataaggtacttttggatttgccctctgtaattttttttt--agatttcgtctttgtaaaataaagattcttca 35891108  T
Q  227 ggattgctccct 238  Q
    ||||||| ||||    
T  35891109 ggattgccccct 35891120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 24436390 - 24436329
Alignment:
Q  177 cctgtaacttcttgtttaagattccatcattgtaaaataaagattcttcaggattgctccct 238  Q
    ||||||| || || ||| ||||||| || ||||||||||||||||| |||||||||| ||||    
T  24436390 cctgtaatttttttttttagattccgtccttgtaaaataaagattcctcaggattgccccct 24436329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 13772627 - 13772591
Alignment:
Q  195 agattccatcattgtaaaataaagattcttcaggatt 231  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  13772627 agattccatccttgtaaaataaagattcttcaagatt 13772591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 242
Target Start/End: Complemental strand, 6000715 - 6000610
Alignment:
Q  139 tttaccccctgtaatatatgacacttttggttttccgtcctgtaacttcttgttta---agattccatcattgtaaaataaagattcttcaggattgctc 235  Q
    ||||||||||||||||||   |||||||||||||||  ||||||| || || |||    |||||||||| |||||||||||||||||||||||||||| |    
T  6000715 tttaccccctgtaatatagagcacttttggttttccc-cctgtaattttttttttcttcagattccatccttgtaaaataaagattcttcaggattgccc 6000617  T
Q  236 cctatgc 242  Q
    |||||||    
T  6000616 cctatgc 6000610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 239
Target Start/End: Complemental strand, 12322842 - 12322746
Alignment:
Q  143 ccccctgtaatatatgacacttttggttttccgtcctgtaacttcttgtttaagattccatcattgtaaaataaagattcttcaggattgctcccta 239  Q
    |||||||||||||| | |||||||| |||| |  ||||||| || || ||| ||||||| || ||||||||| ||||||||||| |||||| |||||    
T  12322842 ccccctgtaatatagggcacttttgattttgccccctgtaatttttttttttagattccgtccttgtaaaatgaagattcttcacgattgcccccta 12322746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 33485115 - 33485019
Alignment:
Q  143 ccccctgtaatatatgacacttttggttttccgtcctgtaacttcttgttt-aagattccatcattgtaaaataaagattcttcaggattgctccct 238  Q
    |||||||||||||| |  |||||||||||| |  ||||||| || || ||| || ||||| || |||||||||||||||||||||||||||| ||||    
T  33485115 ccccctgtaatatagggtacttttggttttgccccctgtaaattttttttttaaaattccgtccttgtaaaataaagattcttcaggattgccccct 33485019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 233
Target Start/End: Complemental strand, 22058318 - 22058227
Alignment:
Q  143 ccccctgtaatatatgacacttttggttttccgtcctgtaacttcttgttta-agattccatcattgtaaaataaagattcttcaggattgc 233  Q
    |||||||||||||| | ||||||||||||| |  ||||||| ||||| |||  ||||||| || ||||||||| ||||||||||| ||||||    
T  22058318 ccccctgtaatatagggcacttttggttttgccccctgtaaattcttttttttagattccgtccttgtaaaatgaagattcttcaagattgc 22058227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 239
Target Start/End: Original strand, 24914456 - 24914553
Alignment:
Q  143 ccccctgtaatatatgacacttttggttttccgtcctgtaacttcttgttta-agattccatcattgtaaaataaagattcttcaggattgctcccta 239  Q
    |||||||||||||| |||||||||| |||| |  ||||||| || || |||  ||||||| || ||||||||| ||||||||||| |||||| |||||    
T  24914456 ccccctgtaatataggacacttttgattttgccccctgtaattttttttttttagattccgtccttgtaaaatgaagattcttcaagattgcccccta 24914553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 232
Target Start/End: Original strand, 11424830 - 11424865
Alignment:
Q  197 attccatcattgtaaaataaagattcttcaggattg 232  Q
    |||||||| |||||||||||||||||||||||||||    
T  11424830 attccatccttgtaaaataaagattcttcaggattg 11424865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 233
Target Start/End: Original strand, 12321580 - 12321671
Alignment:
Q  143 ccccctgtaatatatgacacttttggttttccgtcctgtaacttcttgttta-agattccatcattgtaaaataaagattcttcaggattgc 233  Q
    |||||||||||||| |  |||||||||||| | |||||||| || || |||| ||||| | || ||||||||| ||||||||||| ||||||    
T  12321580 ccccctgtaatatagggtacttttggttttgcctcctgtaattttttttttatagatttcgtccttgtaaaatgaagattcttcacgattgc 12321671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 238
Target Start/End: Original strand, 22056502 - 22056596
Alignment:
Q  145 ccctgtaatatatgacacttttggttttccgtcctgtaacttcttgttta-agattccatcattgtaaaataaagattcttcaggattgctccct 238  Q
    |||||||||||| | ||||||||||||| |  ||||||| || || |||  ||||||| || ||||||||| ||||||||||| |||||| ||||    
T  22056502 ccctgtaatatagggcacttttggttttgccccctgtaaatttttttttttagattccgtccttgtaaaatgaagattcttcaagattgccccct 22056596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 231
Target Start/End: Complemental strand, 11425824 - 11425719
Alignment:
Q  127 ggttaatacggttttaccccctgtaatatatgacacttttggttttccgtcctgt-aacttcttgtttaagattccatcattgtaaaataaagattcttc 225  Q
    ||||||||  |||||| ||||||||||||| | ||||||| ||||||| |||||| || |  || ||| | ||||| || ||||||||||||||||| ||    
T  11425824 ggttaatagtgttttatcccctgtaatatagggcacttttagttttccctcctgtaaaatattttttttaaattccgtctttgtaaaataaagattcatc 11425725  T
Q  226 aggatt 231  Q
    | ||||    
T  11425724 aagatt 11425719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 239
Target Start/End: Original strand, 34762195 - 34762296
Alignment:
Q  139 tttaccccctgtaatatatgacacttttggttttccgtcctgtaacttcttgttta-agattccatcattgtaaaataaagattcttcaggattgctccc 237  Q
    |||||| ||||||||||| | ||||||||||||| |  ||||||| || || |||| ||||| | || ||||||||| |||||||||||  ||||| |||    
T  34762195 tttacctcctgtaatatagggcacttttggttttgctccctgtaaatttttttttatagatttcgtccttgtaaaatgaagattcttcacaattgccccc 34762294  T
Q  238 ta 239  Q
    ||    
T  34762295 ta 34762296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 7313723 - 7313687
Alignment:
Q  137 gttttaccccctgtaatatatgacacttttggttttc 173  Q
    |||||||||||||||||||||| || |||||||||||    
T  7313723 gttttaccccctgtaatatatgtcatttttggttttc 7313687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 171
Target Start/End: Original strand, 16129507 - 16129539
Alignment:
Q  139 tttaccccctgtaatatatgacacttttggttt 171  Q
    |||||||||||||||||||| ||||||||||||    
T  16129507 tttaccccctgtaatatatgtcacttttggttt 16129539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 30953866 - 30953822
Alignment:
Q  128 gttaatacggttttaccccctgtaatatatgacacttttggtttt 172  Q
    ||||||| ||||||| ||| |||||||||||| ||||||||||||    
T  30953866 gttaatagggttttatcccatgtaatatatgaaacttttggtttt 30953822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 238
Target Start/End: Original strand, 28574554 - 28574652
Alignment:
Q  139 tttaccccct-gtaatatatgacacttttggttttccgtcctgtaacttcttgtttaagattccatcattgtaaaataaagattcttcaggattgctccc 237  Q
    |||||||||| ||||||||||||||||||||||||||  ||||||| || || ||| ||||||| || || |||||||||||||||||| |||||| |||    
T  28574554 tttacccccttgtaatatatgacacttttggttttcc-ccctgtaa-ttttttttttagattccgtccttttaaaataaagattcttcaagattgccccc 28574651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 238
Target Start/End: Complemental strand, 27164715 - 27164602
Alignment:
Q  126 aggttaatacggttttaccccctgtaatatatgacacttttggttttccgtcctgt-aacttcttgtttaagattccatcattgtaaaataaagattctt 224  Q
    ||||||||| |  |||||||||||||||||| | ||||||||||||| |  ||||| || || || ||| ||||||| || ||||||||| |||||||||    
T  27164715 aggttaataggtctttaccccctgtaatatagggcacttttggttttgccccctgtaaaattttttttttagattccgtccttgtaaaatgaagattctt 27164616  T
Q  225 caggattgctccct 238  Q
    || |||||| ||||    
T  27164615 caagattgccccct 27164602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 238
Target Start/End: Original strand, 6105556 - 6105669
Alignment:
Q  127 ggttaatacggttttaccccctgtaatatatgacacttttggttttccgtcctgtaacttct--tgtttaagattccatcattgtaaaataaagattctt 224  Q
    ||||||||  |||||||||| || |||||| ||||||||||||||| |  |||||||  | |  | ||| ||||||| |  |||||||||||||||||||    
T  6105556 ggttaatagtgttttaccccgtgcaatataggacacttttggttttgctccctgtaaaatatatttttttagattccgtacttgtaaaataaagattctt 6105655  T
Q  225 caggattgctccct 238  Q
    ||||||||| ||||    
T  6105656 caggattgccccct 6105669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 26711359 - 26711405
Alignment:
Q  137 gttttaccccctgtaatatatgacacttttggttttccgtcctgtaa 183  Q
    |||||||||||||||||||||| || |||||||||||| ||||||||    
T  26711359 gttttaccccctgtaatatatgtcatttttggttttccctcctgtaa 26711405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 39810126 - 39810030
Alignment:
Q  143 ccccctgtaatatatgacacttttggttttccgtcctgtaacttcttgttta-agattccatcattgtaaaataaagattcttcaggattgctccct 238  Q
    |||||||||||||| | ||||||||||||| |  ||||||| || || |||  ||||||| || ||||||||| ||||||||||| |||||| ||||    
T  39810126 ccccctgtaatatagggcacttttggttttgccccctgtaaattattttttttagattccgtccttgtaaaatgaagattcttcaagattgccccct 39810030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 34901502 - 34901548
Alignment:
Q  126 aggttaatacggttttaccccctgtaatatatgacacttttggtttt 172  Q
    ||||||||| | ||||||||||||||||||| | |||||||||||||    
T  34901502 aggttaataggcttttaccccctgtaatataggtcacttttggtttt 34901548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 232
Target Start/End: Original strand, 42348979 - 42349068
Alignment:
Q  143 ccccctgtaatatatgacacttttggttttccgtcctgtaacttcttgtttaagattccatcattgtaaaataaagattcttcaggattg 232  Q
    |||||||||||||| | ||||||||||||| |  ||||||| || |  ||| | ||||| || ||||||||| ||||||||||| |||||    
T  42348979 ccccctgtaatatagggcacttttggttttgccccctgtaatttttctttttaaattccgtccttgtaaaatgaagattcttcaagattg 42349068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 25653705 - 25653761
Alignment:
Q  127 ggttaatacggttttaccccctgtaatatatgacacttttggttttccgtcctgtaa 183  Q
    ||||||||  |||||||||||||||||||| | || ||||||||||||  |||||||    
T  25653705 ggttaatagtgttttaccccctgtaatataggtcatttttggttttcccccctgtaa 25653761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 26537984 - 26538028
Alignment:
Q  139 tttaccccctgtaatatatgacacttttggttttccgtcctgtaa 183  Q
    |||||||| ||||||||||| || |||||||||||| ||||||||    
T  26537984 tttaccccttgtaatatatgtcatttttggttttccctcctgtaa 26538028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 238
Target Start/End: Original strand, 64521 - 64616
Alignment:
Q  143 ccccctgtaatatatgacacttttggttttccgtcctgtaacttcttgtttaagattccatcattgtaaaataaagattcttcaggattgctccct 238  Q
    |||||||||||||| |  |||||||||||| |  ||||||| || || ||| ||||| | || |||||||||||||||||||||||||||| ||||    
T  64521 ccccctgtaatatagggtacttttggttttgccccctgtaatttttttttttagatttcgtccttgtaaaataaagattcttcaggattgccccct 64616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 172
Target Start/End: Complemental strand, 66083 - 66054
Alignment:
Q  143 ccccctgtaatatatgacacttttggtttt 172  Q
    ||||||||||||||||||||||||||||||    
T  66083 ccccctgtaatatatgacacttttggtttt 66054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 2438322 - 2438365
Alignment:
Q  195 agattccatcattgtaaaataaagattcttcaggattgctccct 238  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  2438322 agattccatccttgtaaaataaagattcttcaggattgctccct 2438365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 238
Target Start/End: Original strand, 21994340 - 21994438
Alignment:
Q  139 tttaccccctgtaatatatgacacttttggttttccgtcctgtaacttcttgtttaagattccatcattgtaaaataaagattcttcaggattgctccct 238  Q
    |||||||||||||||||| |||||||||| ||||    ||||||| || || |||| |||||| || ||||||||||||||||||| |||||||| ||||    
T  21994340 tttaccccctgtaatataggacacttttgattttgtcccctgtaatttttttttta-gattccgtccttgtaaaataaagattctttaggattgccccct 21994438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 238
Target Start/End: Complemental strand, 43537880 - 43537781
Alignment:
Q  139 tttaccccctgtaatatatgacacttttggttttccgtcctgtaacttcttgtttaagattccatcattgtaaaataaagattcttcaggattgctccct 238  Q
    |||||| ||| ||||||| || ||||||||||||||  ||||||| || || ||| ||||||| || || ||||||||| ||||||||||||||| ||||    
T  43537880 tttacctcctctaatataggatacttttggttttcccccctgtaatttttttttttagattccgtccttctaaaataaaaattcttcaggattgccccct 43537781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 238
Target Start/End: Original strand, 29248255 - 29248355
Alignment:
Q  139 tttaccccctgtaatatatgacacttttggttttccgtcctgt-aacttcttgtttaagattccatcattgtaaaataaagattcttcaggattgctccc 237  Q
    |||||||||||||||||| ||||||||||||||| |   |||| || || || ||| ||||||| || ||||||||| ||||||||||| |||||| |||    
T  29248255 tttaccccctgtaatataggacacttttggttttacccgctgtaaatttatttttttagattccgtccttgtaaaatgaagattcttcaagattgccccc 29248354  T
Q  238 t 238  Q
    |    
T  29248355 t 29248355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 233
Target Start/End: Complemental strand, 17696012 - 17695921
Alignment:
Q  143 ccccctgtaatatatgacacttttggttttccgtcctgtaa-cttcttgtttaagattccatcattgtaaaataaagattcttcaggattgc 233  Q
    |||||||||||||| ||||||||||||||| |  |||||||  || || ||| ||||| | |||||||||||| ||||||||||| ||||||    
T  17696012 ccccctgtaatataagacacttttggttttgccccctgtaatttttttattttagatttcgtcattgtaaaatgaagattcttcacgattgc 17695921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 233
Target Start/End: Original strand, 20962207 - 20962302
Alignment:
Q  139 tttaccccctgtaatatatgacacttttggttttccgtcctgt-aacttcttgtttaagattccatcattgtaaaataaagattcttcaggattgc 233  Q
    |||||||||||||||||||| ||||||||||||| |  ||||| ||  | || ||| ||||||| || ||||||||| ||||||||||| ||||||    
T  20962207 tttaccccctgtaatatatggcacttttggttttgccccctgtaaaaatttttttttagattccgtccttgtaaaatgaagattcttcaagattgc 20962302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 43537521 - 43537568
Alignment:
Q  195 agattccatcattgtaaaataaagattcttcaggattgctccctatgc 242  Q
    ||||||| || |||||||||||||||||||||||||||| ||||||||    
T  43537521 agattccgtccttgtaaaataaagattcttcaggattgccccctatgc 43537568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 34741433 - 34741337
Alignment:
Q  143 ccccctgtaatatatgacacttttggttttccgtcctgtaac-ttcttgtttaagattccatcattgtaaaataaagattcttcaggattgctccct 238  Q
    |||||||||||||| | ||||||||||||| |  |||||||  || || ||| ||||||| || ||||||||| ||||||||||| |||||| ||||    
T  34741433 ccccctgtaatatagggcacttttggttttgccccctgtaaaattttttttttagattccgtccttgtaaaatgaagattcttcaagattgccccct 34741337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 226
Target Start/End: Original strand, 46426122 - 46426202
Alignment:
Q  147 ctgtaatatatgacacttttggttttccgtcctgt-aacttcttgtttaagattccatcattgtaaaataaagattcttca 226  Q
    |||||||||| |||||||||||||||||   |||| || || || ||| ||||||| || |||||||||||||||||||||    
T  46426122 ctgtaatataggacacttttggttttcccctctgtaaatttttttttttagattccgtccttgtaaaataaagattcttca 46426202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 50879929 - 50880021
Alignment:
Q  146 cctgtaatatatgacacttttggttttccgtcctgtaacttcttgtttaagattccatcattgtaaaataaagattcttcaggattgctccct 238  Q
    ||||||||||| | ||||||||||||| |  ||| ||| || || ||| ||||||| || | |||||||||||||| ||||||||||| ||||    
T  50879929 cctgtaatataggccacttttggttttgctccctctaatttttttttttagattccgtcctggtaaaataaagatttttcaggattgccccct 50880021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 20986099 - 20986001
Alignment:
Q  127 ggttaatacggttttaccccctgtaatatatgacacttttggttttccgtcctgtaacttcttgtttaagattccatcattgtaaaataaagattcttca 226  Q
    ||||||||  |||||||||||| ||||||||||||| ||| ||||| |  |||||||||| || ||| ||||||  || || ||||||||||||| ||||    
T  20986099 ggttaatagtgttttaccccctataatatatgacaccttttgttttgccccctgtaactt-tttttttagattcggtccttataaaataaagatttttca 20986001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 239
Target Start/End: Complemental strand, 55500445 - 55500347
Alignment:
Q  143 ccccctgtaatatatgacacttttggttttccgtcctgtaacttc--ttgtttaagattccatcattgtaaaataaagattcttcaggattgctcccta 239  Q
    |||||||||||||| |||| |||||||||| |  ||||||| ||   || ||| ||||||||||  |||||||| ||||||||||| |||||| |||||    
T  55500445 ccccctgtaatataggacatttttggttttgccccctgtaattttattttttttagattccatccctgtaaaatgaagattcttcacgattgcccccta 55500347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 27450142 - 27450096
Alignment:
Q  137 gttttaccccctgtaatatatgacacttttggttttccgtcctgtaa 183  Q
    |||||||||||||||||||||| || ||||||||||||  |||||||    
T  27450142 gttttaccccctgtaatatatgtcatttttggttttcccccctgtaa 27450096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 233
Target Start/End: Complemental strand, 37421888 - 37421850
Alignment:
Q  195 agattccatcattgtaaaataaagattcttcaggattgc 233  Q
    |||||||||| |||||||||||||||| |||||||||||    
T  37421888 agattccatccttgtaaaataaagattattcaggattgc 37421850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 233
Target Start/End: Complemental strand, 51754185 - 51754147
Alignment:
Q  195 agattccatcattgtaaaataaagattcttcaggattgc 233  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  51754185 agattccgtccttgtaaaataaagattcttcaggattgc 51754147  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 32681716 - 32681757
Alignment:
Q  142 accccctgtaatatatgacacttttggttttccgtcctgtaa 183  Q
    ||||||||||||||| |||| |||||||||||| ||||||||    
T  32681716 accccctgtaatataggacatttttggttttccctcctgtaa 32681757  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 172
Target Start/End: Original strand, 51752696 - 51752729
Alignment:
Q  139 tttaccccctgtaatatatgacacttttggtttt 172  Q
    ||||||||||||||||||||||||||||| ||||    
T  51752696 tttaccccctgtaatatatgacacttttgatttt 51752729  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 172
Target Start/End: Complemental strand, 54555395 - 54555362
Alignment:
Q  139 tttaccccctgtaatatatgacacttttggtttt 172  Q
    |||||||||||||||||||| |||||||||||||    
T  54555395 tttaccccctgtaatatatggcacttttggtttt 54555362  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 12352503 - 12352463
Alignment:
Q  139 tttaccccctgtaatatatgacacttttggttttccgtcct 179  Q
    |||||||||||||||||| | ||||||||||||||| ||||    
T  12352503 tttaccccctgtaatataggtcacttttggttttccctcct 12352463  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 22272931 - 22272987
Alignment:
Q  127 ggttaatacggttttaccccctgtaatatatgacacttttggttttccgtcctgtaa 183  Q
    |||||||| | ||||||||||||||||||| | || ||| |||||||| ||||||||    
T  22272931 ggttaataggtttttaccccctgtaatataggtcattttcggttttccctcctgtaa 22272987  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 29249749 - 29249653
Alignment:
Q  143 ccccctgtaatatatgacacttttggttttccgtcctgtaacttcttgttta-agattccatcattgtaaaataaagattcttcaggattgctccct 238  Q
    |||||||||||||| |  |||||||||||| |  ||||||| || || |||  ||||| | || ||||||||||||||||||||| |||||| ||||    
T  29249749 ccccctgtaatatagggaacttttggttttgccccctgtaaatttttttttttagatttcgtccttgtaaaataaagattcttcaagattgccccct 29249653  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 34318680 - 34318637
Alignment:
Q  139 tttaccccctgtaatatatgacacttttggttttccgtcctgtaa 183  Q
    |||||||||||||||||||| || |||||||||||| ||||||||    
T  34318680 tttaccccctgtaatatatgtcatttttggttttcc-tcctgtaa 34318637  T

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Target: scaffold0129 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 239
Target Start/End: Complemental strand, 37446 - 37334
Alignment:
Q  127 ggttaatacggttttac-cccctgtaatatatgacacttttggttttccgtcctgtaacttcttgtttaagattccatcattgtaaaataaagattcttc 225  Q
    ||||||||  ||||||| ||||||| ||||| || |||||||||||| |  ||||||| || ||  ||| |||||| || ||||||||||||||||||||    
T  37446 ggttaatagagttttacacccctgtcatataggatacttttggttttgccccctgtaatttttttatta-gattccgtccttgtaaaataaagattcttc 37348  T
Q  226 aggattgctcccta 239  Q
    |||||||| |||||    
T  37347 aggattgcccccta 37334  T

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Target: scaffold0250 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 11608 - 11512
Alignment:
Q  143 ccccctgtaatatatgacacttttggttttccgtcctgtaacttcttgttta-agattccatcattgtaaaataaagattcttcaggattgctccct 238  Q
    |||||||||||||||   |||||||||||| |  ||||||| || || |||  ||||||| || |||||||||||||||||||||||||||| ||||    
T  11608 ccccctgtaatatatagtacttttggttttgccccctgtaaatttttttttttagattccgtccttgtaaaataaagattcttcaggattgccccct 11512  T

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Target: scaffold0210 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 16685 - 16732
Alignment:
Q  191 tttaagattccatcattgtaaaataaagattcttcaggattgctccct 238  Q
    |||||||||| ||| |||||||||||||||| ||||||||||| ||||    
T  16685 tttaagattcaatccttgtaaaataaagattattcaggattgccccct 16732  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 139234 - 139143
Alignment:
Q  139 tttaccccctgtaatatatgacacttttggttttccgtcctgtaactt----cttgtttaagattccatcattgtaaaataaagattcttcag 227  Q
    ||||||||||||||||||||||||||||| || | | |||||||| ||     || ||| ||||||  |||||||||||||||||||||||||    
T  139234 tttaccccctgtaatatatgacacttttgattctgc-tcctgtaaatttttattttttttagattctgtcattgtaaaataaagattcttcag 139143  T

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Target: scaffold0093 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 233
Target Start/End: Complemental strand, 9034 - 8996
Alignment:
Q  195 agattccatcattgtaaaataaagattcttcaggattgc 233  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  9034 agattccgtccttgtaaaataaagattcttcaggattgc 8996  T

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Target: scaffold0227 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 24922 - 24881
Alignment:
Q  197 attccatcattgtaaaataaagattcttcaggattgctccct 238  Q
    ||||| || |||||||||||||||||||||||||||| ||||    
T  24922 attccgtccttgtaaaataaagattcttcaggattgccccct 24881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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