View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0635_high_13 (Length: 250)
Name: NF0635_high_13
Description: NF0635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0635_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 27231994 - 27231758
Alignment:
| Q |
13 |
aatataaacgaatttgtagaccttaatatggaatctagtaagaaggttgactttcaattcaataagctgatattgtaacaagtaaaaaatacgttcggcc |
112 |
Q |
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| T |
27231994 |
aatataaacgaatttggagaccttaatatggaatctagtaagaaggttgactttcaattcaataagcttatattgtaacaggtaaaaaatacgtt-ggcc |
27231896 |
T |
|
| Q |
113 |
gaggtagtttaactgatttgagttaaattattaaaaggagtcgttcaaatttcatgtatttg-nnnnnnnttgttctaagtggacttcagttcacgaatg |
211 |
Q |
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||||||| | ||||||||||||||||| ||||||||| || ||||||||||||||| |||| |||||||||||| ||||||||||||||||| |
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| T |
27231895 |
gaggtagctcaactgatttgagttaaactattaaaagtagctgttcaaatttcatgtgtttgaaaaaaaattgttctaagtgaacttcagttcacgaatg |
27231796 |
T |
|
| Q |
212 |
tatttgtcaaagacaattgttcatcacacatacacaat |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
27231795 |
tatttgtcaaagacaattgttcatcacacatacacaat |
27231758 |
T |
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