View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0635_high_3 (Length: 473)
Name: NF0635_high_3
Description: NF0635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0635_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 3e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 273 - 466
Target Start/End: Original strand, 1529718 - 1529912
Alignment:
| Q |
273 |
gcttcgtccgagacaacatgtgttacgccgacaatc-tttctccgtcgtccttactctttgcttcaaaggtgagtctattctttcattactttgctgtta |
371 |
Q |
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| T |
1529718 |
gcttcgtctgagacaacatgtgttgcgccgacaatcgtttctccgtcgtccttgctctttgcttcaaaggtgagtctattctttcattactttgctgtta |
1529817 |
T |
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| Q |
372 |
caacatcaagaatccctaaattaaatttaaaattgcaaccttctaattattgggttatatgaaatcttctaatattgatacttatgttcatctca |
466 |
Q |
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| T |
1529818 |
caacatcaagaatccctaaattaattttaaaattgcaaccttctaattatttggttatatgaaatcttctaatattgatacttatgttcatctca |
1529912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 1e-76; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 273 - 466
Target Start/End: Original strand, 26841487 - 26841687
Alignment:
| Q |
273 |
gcttcgtccgagacaacatgtgttacgccgacaatc-tttctccgtcgtccttactctttgcttcaaaggtgagtctattctttcattactttg------ |
365 |
Q |
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| T |
26841487 |
gcttcgtcggagacaacatgtgttgcgccgacaatcgtttctccgtcgtccttgctctttgcttcaaaggcgagtctattctttcgttactttgttgtgc |
26841586 |
T |
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| Q |
366 |
ctgttacaacatcaagaatccctaaattaaatttaaaattgcaaccttctaattattgggttatatgaaatcttctaatattgatacttatgttcatctc |
465 |
Q |
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| T |
26841587 |
ctgttacaacatcaagaatccctaaattaattttaaaattgcaaccttctaattattgggttatatgaaatcttctaatattgatacttatgttcatctc |
26841686 |
T |
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| Q |
466 |
a |
466 |
Q |
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| T |
26841687 |
a |
26841687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 326 - 466
Target Start/End: Complemental strand, 22476946 - 22476806
Alignment:
| Q |
326 |
ctctttgcttcaaaggtgagtctattctttcattactttgctgttacaacatcaagaatccctaaattaaatttaaaattgcaaccttctaattattggg |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||| |||||||||||| ||||||||||||| || |
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| T |
22476946 |
ctctttgcttcaaaggtgagtctattctttcattactttgttgttacaacatgagaaatccctaaattaattttaaaattgcagccttctaattatttgg |
22476847 |
T |
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| Q |
426 |
ttatatgaaatcttctaatattgatacttatgttcatctca |
466 |
Q |
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| T |
22476846 |
ttatatgaaatcttctaatattgatacttatgttcatctca |
22476806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 52 - 219
Target Start/End: Original strand, 26841255 - 26841433
Alignment:
| Q |
52 |
catccttctcactttccaagaaaa-aattcaaatcattccttctctctattcacaaagtctatccctatatctcaatatgttgtcttcaaccacagtcat |
150 |
Q |
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| T |
26841255 |
catcctcctcactttccaagaaaaaaattcaaatcattccttctctctattcacaaagtctatccctatatctcaatatgttgtcttcaaccactgtcat |
26841354 |
T |
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| Q |
151 |
agcctaagccaaacacacttttgccatctaa----------ataaaaccttgccggaacagccatgttcggccataacg |
219 |
Q |
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| T |
26841355 |
cgcctaagccaaacactgtttcgccatctaaaaatgtacagataaaacctcgccggaacagccatgttcggccataacg |
26841433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 52 - 125
Target Start/End: Complemental strand, 22482421 - 22482348
Alignment:
| Q |
52 |
catccttctcactttccaagaaaaaattcaaatcattccttctctctattcacaaagtctatccctatatctca |
125 |
Q |
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| T |
22482421 |
catcctcctcactttccaagaaaaaattcaaatcattccttctctctattcacaaagtctatccctatatctca |
22482348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 22477078 - 22477034
Alignment:
| Q |
122 |
ctcaatatgttgtcttcaaccacagtcatagcctaagccaaacac |
166 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22477078 |
ctcaatatgttgtcttcaaccacagtcatcgcctaagccaaacac |
22477034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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