View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0635_high_5 (Length: 399)
Name: NF0635_high_5
Description: NF0635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0635_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 7 - 259
Target Start/End: Complemental strand, 6543097 - 6542845
Alignment:
| Q |
7 |
agtgttaccgagccaaagatggacccgttgttttacctgttttctatgatggtgtccattcccccagtagaatattgcaggaagatatgtatggagaggc |
106 |
Q |
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| T |
6543097 |
agtgttaccgaaccaaagatggtcccgttgttttacctgtgttctatgatggtgtccattcccccagtagaatattgcaggaagatatgtatggagaggc |
6542998 |
T |
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| Q |
107 |
ttttcatgattttctggatagaatctcaatgaaggagaaaacctcttccgaagatgaagacaagttcatgagttgggtagcagaaatcagcaatgaagct |
206 |
Q |
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| T |
6542997 |
ttttcatgattttctggatagaatttcaatgaaggagaaaacctcttccgaagatgaagacaagttcatgagttgggtagcagaaatcagcaatgaagct |
6542898 |
T |
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| Q |
207 |
tccaaatatgctgcattagcttttttacgatatggaccaaatgagtaatgaaa |
259 |
Q |
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| T |
6542897 |
tccaaatatgctgcattagcttttttacgatatggaccaaatcagtaatgaaa |
6542845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 6737677 - 6737975
Alignment:
| Q |
1 |
taactgagtgttaccgagccaaagatggacccgttgttttacctgttttctatgatggtgtccattcccccagtagaatattgcaggaagatatgtatgg |
100 |
Q |
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| T |
6737677 |
taactgagtgttaccgaactaaagatggtcccattgttttacctttgttctatgatggtgtctattcccccaacagaagattgcaggaagatatgttcgg |
6737776 |
T |
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| Q |
101 |
agaggcttttcatgattttctggatagaatctcaatg---aaggagaaaacctcttccgaagatgaagacaagttcatgagttgggtagcagaaatcagc |
197 |
Q |
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| T |
6737777 |
agaggctttacataattttctggatagaatctcaatggaagaggaaacaacctctttcgaagatgaagacaagttcatgagttgggtagcagaaatcagt |
6737876 |
T |
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| Q |
198 |
aatgaagcttccaaatatgctgcattagcttttttacgatatggaccaaatgagtaatgaaacttgcttgatttgaaattagattactagatctttatgg |
297 |
Q |
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| T |
6737877 |
gatgaagcttccaaatatgctgcgtgagcttatttacgatgcggac---gtaagtaat-aaacttgcttgatttgaaattatataactccatctttattg |
6737972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 89 - 210
Target Start/End: Original strand, 6748106 - 6748227
Alignment:
| Q |
89 |
agatatgtatggagaggcttttcatgattttctggatagaatctcaatgaaggagaaaacctcttccgaagatgaagacaagttcatgagttgggtagca |
188 |
Q |
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| T |
6748106 |
agatatgtacggagagggttttcataatttcatggatagaatctccatggagaagaaaacctcttcggaagatgaagacaagttcatggcatgggtagca |
6748205 |
T |
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| Q |
189 |
gaaatcagcaatgaagcttcca |
210 |
Q |
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| T |
6748206 |
gcaatcagtaatgaagcttcca |
6748227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 89 - 282
Target Start/End: Complemental strand, 6506579 - 6506389
Alignment:
| Q |
89 |
agatatgtatggagaggcttttcatgattttctggatagaatctcaatgaaggagaaaacctcttccgaagatgaagacaagttcatgagttgggtagca |
188 |
Q |
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| T |
6506579 |
agatacgtatgtagatgcttttcatgattatgtggacaaaatcttgatgctggaggaaacctcttctgcagatgaagacaagtttatgacttggatagca |
6506480 |
T |
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| Q |
189 |
gaaatcagcaatgaagcttccaaatatgctgcattagcttttttacgatatggaccaaatgagtaatgaaacttgcttgatttgaaattagatt |
282 |
Q |
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| T |
6506479 |
gctatcactaatcaagcttccaaatatgctgaattagatcctttacattgcggac---aagagtaatgaatcttgcttcatttgaaattagatt |
6506389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 6503014 - 6502954
Alignment:
| Q |
156 |
gaagatgaagacaagttcatgagttgggtagcagaaatcagcaatgaagcttccaaatatg |
216 |
Q |
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| T |
6503014 |
gaagacgaagacaagttcatgacttgggtagcagcagtcactaatgaagcttccaaatatg |
6502954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 142
Target Start/End: Complemental strand, 6593935 - 6593899
Alignment:
| Q |
106 |
cttttcatgattttctggatagaatctcaatgaagga |
142 |
Q |
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| T |
6593935 |
cttttcatgattttctggatagaatatcaatggagga |
6593899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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