View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0635_high_7 (Length: 360)

Name: NF0635_high_7
Description: NF0635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0635_high_7
NF0635_high_7
[»] chr4 (2 HSPs)
chr4 (1-330)||(54432483-54432785)
chr4 (130-316)||(563224-563411)
[»] chr3 (2 HSPs)
chr3 (136-330)||(50523879-50524073)
chr3 (162-227)||(4533418-4533483)
[»] chr7 (4 HSPs)
chr7 (183-330)||(25556701-25556854)
chr7 (185-324)||(36281580-36281718)
chr7 (162-206)||(19928328-19928372)
chr7 (136-180)||(25556664-25556708)
[»] chr2 (3 HSPs)
chr2 (183-318)||(32750981-32751116)
chr2 (162-227)||(14314449-14314514)
chr2 (162-227)||(14811222-14811287)
[»] chr5 (1 HSPs)
chr5 (162-227)||(6665669-6665734)
[»] scaffold0017 (1 HSPs)
scaffold0017 (162-227)||(38116-38181)
[»] chr6 (1 HSPs)
chr6 (162-219)||(11382461-11382518)
[»] chr1 (1 HSPs)
chr1 (162-227)||(46398159-46398224)


Alignment Details
Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 54432483 - 54432785
Alignment:
Q  1 aatacaaatgagagggcaaaataagagaatattttttgatgtggagagaacatcataagatctataagtctactttatccaatgattctcactatttgtc 100  Q
    |||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  54432483 aatacaaatgagagggcaaaataagagaatatgttttggtgtagagagaacatcataagatctataagtctactttatccaatgattctcaccatttgtc 54432582  T
Q  101 cagaatggaccaatacttataagctctaaaaagctccgatactctaaaatttacgaagaatcgtatccgataccgatacgctccgatacatcccaatacg 200  Q
    ||||||||||||||||||||||||||||||||                  | | ||||||||||||||||||||||||||          |||| |||||    
T  54432583 cagaatggaccaatacttataagctctaaaaa------------------tcatgaagaatcgtatccgataccgatacg----------tcccgatacg 54432654  T
Q  201 cgtatcagagaagtatcgggtaattaac-ttttttnnnnnnntatttaaattatcgatacgtatcggatacggctaatttatacacccgatacggctaat 299  Q
    ||||| | ||||||||| |||||||||| ||||||       ||||||||||| |||||||||||| |||| ||||| ||||||| ||||||||||||||    
T  54432655 cgtataaaagaagtatcaggtaattaactttttttaaaaaaatatttaaattaccgatacgtatcgaatacagctaacttatacatccgatacggctaat 54432754  T
Q  300 ctaaccgatacttcattcggtacgtggacaa 330  Q
    ||||| ||||||||||||| |||||||||||    
T  54432755 ctaactgatacttcattcgatacgtggacaa 54432785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 130 - 316
Target Start/End: Complemental strand, 563411 - 563224
Alignment:
Q  130 aaagctccgatactctaaaatttacgaagaatcgtatccgataccgatacgct-ccgatacatcccaatacgcgtatcagagaagtatcgggtaattaac 228  Q
    ||||| ||||||||| |||| |  |||||||||||||| || ||  || || | |||||||  ||| ||| | |||| ||||||||||||  ||||||||    
T  563411 aaagccccgatactccaaaaatcgcgaagaatcgtatctgacacatatccgataccgatacgccccgatatgtgtattagagaagtatcgaataattaac 563312  T
Q  229 ttttttnnnnnnntatttaaattatcgatacgtatcggatacggctaatttatacacccgatacggctaatctaaccgatacttcatt 316  Q
    || |||       |||||||||||||||||||| ||||||||| |||| ||||||||| |||||||||||   |||||||||||||||    
T  563311 ttcttttaaaaaatatttaaattatcgatacgtgtcggatacgactaacttatacacctgatacggctaaataaaccgatacttcatt 563224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 136 - 330
Target Start/End: Complemental strand, 50524073 - 50523879
Alignment:
Q  136 ccgatactctaaaatttacgaagaatcgtatccgataccgatacgctccgatacatcccaatacgcgtatcagagaagtatcgggtaattaacttttttn 235  Q
    |||||| ||||||| | ||||||||||||||||||||||||| ||  |||||| ||||| || |||||||||||||||||||| |||||||||||||||     
T  50524073 ccgatattctaaaaatcacgaagaatcgtatccgataccgatgcgtcccgatatatcccgatgcgcgtatcagagaagtatcgcgtaattaacttttttt 50523974  T
Q  236 nnnnnntatttaaattatcgatacgtatcggatacggctaatttatacacccgatacggctaatctaaccgatacttcattcggtacgtggacaa 330  Q
          ||||||||||| ||||||||||||||||||||||| ||||||||| ||||| ||||| ||||||||||||||||||| |||||||||||    
T  50523973 aaaaaatatttaaattaccgatacgtatcggatacggctaacttatacacctgatacagctaaactaaccgatacttcattcgatacgtggacaa 50523879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 4533418 - 4533483
Alignment:
Q  162 cgtatccgataccgatacgctccgatacatcccaatacgcgtatcagagaagtatcgggtaattaa 227  Q
    |||||| ||||||||||||||||||||| | || ||||| ||||| || |||||||||| ||||||    
T  4533418 cgtatctgataccgatacgctccgatacgttccgatacgggtatcggaaaagtatcgggcaattaa 4533483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 7e-34; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 183 - 330
Target Start/End: Original strand, 25556701 - 25556854
Alignment:
Q  183 ccgatacatcccaatacgcgtatcagagaagtatcgggtaattaacttttttnnnnnnnt------atttaaattatcgatacgtatcggatacggctaa 276  Q
    ||||||| |||  ||||| |||||||||||||||||||||||||||||||||       |      ||||||||||  ||||||||||||||||||||||    
T  25556701 ccgatacgtcctgatacgtgtatcagagaagtatcgggtaattaacttttttttttttttttaaatatttaaattactgatacgtatcggatacggctaa 25556800  T
Q  277 tttatacacccgatacggctaatctaaccgatacttcattcggtacgtggacaa 330  Q
     ||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  25556801 cttatacacccgatacggctaaactaaccgatacttcattcgatacgtggacaa 25556854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 185 - 324
Target Start/End: Original strand, 36281580 - 36281718
Alignment:
Q  185 gatacatcccaatacgcgtatcagagaagtatcgggtaattaacttttttnnnnnnntatttaaattatcgatacgtatcggatacggctaatttataca 284  Q
    ||||| |||| |||||||||| ||||||||||||||||||||||||||||       ||  |||||||||||||| | |||||||||| ||| ||||||     
T  36281580 gatacgtcccgatacgcgtataagagaagtatcgggtaattaacttttttaaaaaattaaataaattatcgatacatgtcggatacggataacttatac- 36281678  T
Q  285 cccgatacggctaatctaaccgatacttcattcggtacgt 324  Q
    ||||||||||||||   |||| |||||||||||| |||||    
T  36281679 cccgatacggctaaataaaccaatacttcattcgatacgt 36281718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 19928372 - 19928328
Alignment:
Q  162 cgtatccgataccgatacgctccgatacatcccaatacgcgtatc 206  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||    
T  19928372 cgtatccgataccgatacgctccgatacatcccgatacgggtatc 19928328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 25556664 - 25556708
Alignment:
Q  136 ccgatactctaaaatttacgaagaatcgtatccgataccgatacg 180  Q
    |||||||||||||| | ||||||||| ||||| ||||||||||||    
T  25556664 ccgatactctaaaaatcacgaagaatagtatctgataccgatacg 25556708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 183 - 318
Target Start/End: Complemental strand, 32751116 - 32750981
Alignment:
Q  183 ccgatacatcccaatacgcgtatcagagaagtatcgggtaattaacttttttnnnnnnntatttaaattatcgatacgtatcggatacggctaatttata 282  Q
    ||||||| |||||||||| |||| ||||||||||| ||||||||| ||| ||       ||  |||||||||||| ||| ||| |||||||||| |||||    
T  32751116 ccgatacgtcccaatacgtgtattagagaagtatcaggtaattaaatttatttaaaaattaaataaattatcgatgcgtgtcgaatacggctaacttata 32751017  T
Q  283 cacccgatacggctaatctaaccgatacttcattcg 318  Q
      ||||||||||||||   |||||||||||||||||    
T  32751016 tccccgatacggctaaataaaccgatacttcattcg 32750981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 14314514 - 14314449
Alignment:
Q  162 cgtatccgataccgatacgctccgatacatcccaatacgcgtatcagagaagtatcgggtaattaa 227  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||| || |||||||||| ||||||    
T  14314514 cgtatccgataccgatacgccccgatacgtcccgatacgcgtatcggaaaagtatcgggcaattaa 14314449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 14811222 - 14811287
Alignment:
Q  162 cgtatccgataccgatacgctccgatacatcccaatacgcgtatcagagaagtatcgggtaattaa 227  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||| || |||||||||| ||||||    
T  14811222 cgtatccgataccgatacgccccgatacgtcccgatacgcgtatcggaaaagtatcgggcaattaa 14811287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 6665669 - 6665734
Alignment:
Q  162 cgtatccgataccgatacgctccgatacatcccaatacgcgtatcagagaagtatcgggtaattaa 227  Q
    ||||| |||||||||||||| ||||||| |||||||||||||||| ||||||||||| | ||||||    
T  6665669 cgtattcgataccgatacgccccgatacgtcccaatacgcgtatcggagaagtatcgagcaattaa 6665734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 38181 - 38116
Alignment:
Q  162 cgtatccgataccgatacgctccgatacatcccaatacgcgtatcagagaagtatcgggtaattaa 227  Q
    |||||| ||||||||||||| ||||||| |||| ||||| |||||||| |||||||||| ||||||    
T  38181 cgtatctgataccgatacgccccgatacgtcccgatacgggtatcagaaaagtatcgggcaattaa 38116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 11382461 - 11382518
Alignment:
Q  162 cgtatccgataccgatacgctccgatacatcccaatacgcgtatcagagaagtatcgg 219  Q
    ||||||||||| |||||||| |||||||||||| ||||| |||||||| |||||||||    
T  11382461 cgtatccgatatcgatacgccccgatacatcccgatacgggtatcagaaaagtatcgg 11382518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 46398224 - 46398159
Alignment:
Q  162 cgtatccgataccgatacgctccgatacatcccaatacgcgtatcagagaagtatcgggtaattaa 227  Q
    |||||| ||||||||||||||||||||| | || ||||| |||||||| |||| ||||| ||||||    
T  46398224 cgtatctgataccgatacgctccgatacgttccgatacgggtatcagaaaagtgtcgggcaattaa 46398159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 3376 times since January 2019
Visitors: 4034