View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0635_high_8 (Length: 357)
Name: NF0635_high_8
Description: NF0635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0635_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 30 - 347
Target Start/End: Complemental strand, 45935387 - 45935070
Alignment:
| Q |
30 |
ggatcaaattactccataatgttgttagctatatgatgcaggaattttagcttaccagaataatggcccatccagagggcatgaaggcaagaacggaagc |
129 |
Q |
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| T |
45935387 |
ggatcaaattactccataatgttgttagctatatgatgcaggaattttagcttaccagaataatggcccatccagagggcatgaaggcaagaacggaagc |
45935288 |
T |
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| Q |
130 |
aaacaaatctgataccgtaagcgcacacacaacaaataacactatcattactgacaagaagccaagaaacagaagtgccttgagaatacggaacttgagc |
229 |
Q |
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| T |
45935287 |
aaacaaatctgataccgtaagcgcgcacacaacaaataacactatcattactgacaagaagccaagaaatagaagtgccttgagaatacggaacttgagc |
45935188 |
T |
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| Q |
230 |
tgaaagttggtgccaaatcttcgtttacccatgaaaagcatctgatgcccataagaaaattcatgcaaacatcagaaattatattttttatactataagt |
329 |
Q |
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| T |
45935187 |
tgaaagttggtgccaaatcttcgtttacccatggaaagcatctgatgcccataagaaaattcatgcaaacatcagaaattatattttttatactataagt |
45935088 |
T |
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| Q |
330 |
ttgactatgcaacagcta |
347 |
Q |
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| T |
45935087 |
ttgactatgcaacagcta |
45935070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 61 - 342
Target Start/End: Complemental strand, 15817585 - 15817303
Alignment:
| Q |
61 |
tatgatgcaggaattttagcttaccagaataatggcccatccagagggcatgaaggcaagaacggaagcaaacaaatctgataccgtaagcgcacacaca |
160 |
Q |
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| T |
15817585 |
tatgatgcaggaaatttagcttaccagaataatggcccatccagagggcatgaaggcaagaacggaagcaaacaaatctgataccgtaagcgcacacaca |
15817486 |
T |
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| Q |
161 |
acaaataacactatcattactgacaagaagccaagaaacagaagtgccttgagaatacggaacttgagctgaaagttggtgccaaatcttcgtttaccca |
260 |
Q |
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| T |
15817485 |
acaaataacactgccattactgacaagaagccgagaaacagaagtgccttgagaatacggaacatgagctgaaagtcggtaccaaatcttcgtctaccca |
15817386 |
T |
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| Q |
261 |
tgaaaagcatctgatgcccataagaaaattcatgcaaacatcagaaattatattt-tttatactataagtttgactatgcaac |
342 |
Q |
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|| ||| |||||||| |||||| |||| ||||| |||||||||||||||| |||| || ||||| ||| ||| |||||||||| |
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| T |
15817385 |
tggaaaccatctgatacccatatgaaagttcatccaaacatcagaaattagatttattcatactgtaattttaactatgcaac |
15817303 |
T |
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