View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0635_low_10 (Length: 365)

Name: NF0635_low_10
Description: NF0635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0635_low_10
NF0635_low_10
[»] chr2 (1 HSPs)
chr2 (30-262)||(1720608-1720840)
[»] chr8 (1 HSPs)
chr8 (271-342)||(38874316-38874387)
[»] chr3 (1 HSPs)
chr3 (70-234)||(18372753-18372915)


Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 30 - 262
Target Start/End: Complemental strand, 1720840 - 1720608
Alignment:
Q  30 ccaaattcttcaaccaagatcgacaacaaaatgctagtaaaaatgcatcaagccattcctctttgttgttgtctacaactacaatcggtaacaaacgcgc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1720840 ccaaattcttcaaccaagatcgacaacaaaatgctagtaaaaatgcatcaagccattcctctttgttgttgtctacaactacaatcggtaacaaacgcgc 1720741  T
Q  130 ggttctatgtggagttacttacagaagaagacggtacatgctcaagggaaccgttaatgatgttgttaacatgaaaaaactactgactaataattttgca 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1720740 ggttctatgtggagttacttacagaagaagacggtacatgctcaagggaaccgttaatgatgttgttaacatgaaaaaactactgactaataattttgca 1720641  T
Q  230 ttcccaatagaatccatacgcgtcctcacaggt 262  Q
    |||||||||||||||||||||||||||||||||    
T  1720640 ttcccaatagaatccatacgcgtcctcacaggt 1720608  T

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Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 271 - 342
Target Start/End: Complemental strand, 38874387 - 38874316
Alignment:
Q  271 ttcactgaatcaacggcttcaataacctgcattgcaacaaaattaactctgaatggttttgaagcagcgaag 342  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38874387 ttcaatgaatcaacggcttcaataacctgcattgcaacaaaattaactctgaatggttttgaagcagcgaag 38874316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 234
Target Start/End: Original strand, 18372753 - 18372915
Alignment:
Q  70 aaatgcatcaagccattcctctttgttgttgtctacaactacaatcggtaacaaacgcgcggttctatgtggagttacttacagaagaagacggtacatg 169  Q
    |||||||||| |||||||||| | ||||||||||||||| |  | | ||||||| | |  ||||||||||||||| |||| |||  ||||| | |||| |    
T  18372753 aaatgcatcaggccattcctcgtcgttgttgtctacaacaatcacccgtaacaagcacatggttctatgtggagtaacttgcag-cgaagatgttacaag 18372851  T
Q  170 ctcaagggaaccgttaatgatgttgttaacatgaaaaaactactgactaataattttgcattccc 234  Q
    ||||| |||||| |||||||||| ||||||||| |||| |||  |  ||| ||||||||||||||    
T  18372852 ctcaa-ggaaccattaatgatgtcgttaacatggaaaatctaacggttaacaattttgcattccc 18372915  T

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