View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0635_low_14 (Length: 260)
Name: NF0635_low_14
Description: NF0635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0635_low_14 |
 | |
|
| [»] scaffold0078 (3 HSPs) |
| | |
|
| [»] scaffold0184 (2 HSPs) |
| | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 4 - 231
Target Start/End: Complemental strand, 16566923 - 16566696
Alignment:
| Q |
4 |
acttaatcatctttgcaattttctccttttccacaatgtcatcatcttcaaatttcaaccttaaagccactttaagaccatcacataacataacagcatt |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16566923 |
acttaatcatctttgcaattttctccttttccacaatgtcatcatcttcaaatttcaaccttaaagccactttaagaccatcacataacataacagcatt |
16566824 |
T |
|
| Q |
104 |
cattgcttgttcggcaaacaatggccaagctactattggcaccccctcttgtatactttccaaagtcgaattccaaccacaatgacttaaaaatccacca |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16566823 |
cattgcttgttcggcaaacaatggccaagctactattggcaccccctcttgtatactttccaaagtcgaattccaaccacaatgacttaaaaatccacca |
16566724 |
T |
|
| Q |
204 |
actgaattttgctttagtatttcaactt |
231 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
16566723 |
actgaattttgctttagtatttcaactt |
16566696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 16598739 - 16598966
Alignment:
| Q |
4 |
acttaatcatctttgcaattttctccttttccacaatgtcatcatcttcaaatttcaaccttaaagccactttaagaccatcacataacataacagcatt |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16598739 |
acttaatcatctttgcaattttctccttttccacaatgtcatcatcttcaaatttcaaccttaaagccactttaagaccatcacataacataacagcatt |
16598838 |
T |
|
| Q |
104 |
cattgcttgttcggcaaacaatggccaagctactattggcaccccctcttgtatactttccaaagtcgaattccaaccacaatgacttaaaaatccacca |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16598839 |
cattgcttgttcggcaaacaatggccaagctactattggcaccccctcttgtatactttccaaagtcgaattccaaccacaatgacttaaaaatccacca |
16598938 |
T |
|
| Q |
204 |
actgaattttgctttagtatttcaactt |
231 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
16598939 |
actgaattttgctttagtatttcaactt |
16598966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 16491067 - 16491003
Alignment:
| Q |
66 |
aaagccactttaagaccatcacataacataacagcattcattgcttgttcggcaaacaatggcca |
130 |
Q |
| |
|
||||||||||| | ||||||||| |||||| ||||||||| ||||||| |||||||||||||| |
|
|
| T |
16491067 |
aaagccactttcacaccatcacacaacatagtagcattcatcccttgttcagcaaacaatggcca |
16491003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 3270 - 3040
Alignment:
| Q |
1 |
cacacttaatcatctttgcaattttctccttttccacaatgtcatcatcttcaaatttcaaccttaaagccactttaagaccatcacataacataacagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3270 |
cacacttaatcatctttgcaattttctccttttccacaatctcatcatcttcaaatttcaaccttaaagccactttaagaccatcacataacataacagc |
3171 |
T |
|
| Q |
101 |
attcattgcttgttcggcaaacaatggccaagctactattggcaccccctcttgtatactttccaaagtcgaattccaaccacaatgacttaaaaatcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3170 |
attcattgcttgttcggcaaacaatggccaagctactattggcaccccctcttgtatactttccaaagtcgaattccaaccacaatgacttaaaaatcca |
3071 |
T |
|
| Q |
201 |
ccaactgaattttgctttagtatttcaactt |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
3070 |
ccaactgaattttgctttagtatttcaactt |
3040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 2 - 231
Target Start/End: Complemental strand, 57812 - 57583
Alignment:
| Q |
2 |
acacttaatcatctttgcaattttctccttttccacaatgtcatcatcttcaaatttcaaccttaaagccactttaagaccatcacataacataacagca |
101 |
Q |
| |
|
||||||||||| |||||||||| |||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||| |
|
|
| T |
57812 |
acacttaatcacatttgcaatttcatccttttctacaatctcatcatcttcaaatttcaaccttattgccactttaagaccatcacttaacaaaacagca |
57713 |
T |
|
| Q |
102 |
ttcattgcttgttcggcaaacaatggccaagctactattggcaccccctcttgtatactttccaaagtcgaattccaaccacaatgacttaaaaatccac |
201 |
Q |
| |
|
|||||||||||||| ||||| || ||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
57712 |
ttcattgcttgttctgcaaataaaggccaagctactattggcaccccctcttgcatactctccaaaactgaattccaaccacaatgacttaaaaatccac |
57613 |
T |
|
| Q |
202 |
caactgaattttgctttagtatttcaactt |
231 |
Q |
| |
|
|||||||| | || || ||||||||||||| |
|
|
| T |
57612 |
caactgaactatgtttaagtatttcaactt |
57583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #3
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 2 - 231
Target Start/End: Complemental strand, 22523 - 22294
Alignment:
| Q |
2 |
acacttaatcatctttgcaattttctccttttccacaatgtcatcatcttcaaatttcaaccttaaagccactttaagaccatcacataacataacagca |
101 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||||||| |||||||||||| ||| || ||||||||| ||| |
|
|
| T |
22523 |
acacttaatcacatttgcaattttatccttttctacaatctcatcatcttcaaatttcaaccttatggccactttaagatcattacttaacataactgca |
22424 |
T |
|
| Q |
102 |
ttcattgcttgttcggcaaacaatggccaagctactattggcaccccctcttgtatactttccaaagtcgaattccaaccacaatgacttaaaaatccac |
201 |
Q |
| |
|
|||||||||||||| ||||| || ||||||||||||||||||||||||||||| ||||| |||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
22423 |
ttcattgcttgttctgcaaataaaggccaagctactattggcaccccctcttgcatactctccaaaactgaattccatccacaatgacttaaaaatccac |
22324 |
T |
|
| Q |
202 |
caactgaattttgctttagtatttcaactt |
231 |
Q |
| |
|
||||||| |||| ||| ||||||| ||||| |
|
|
| T |
22323 |
caactgacttttccttaagtatttgaactt |
22294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 2 - 231
Target Start/End: Original strand, 15032 - 15261
Alignment:
| Q |
2 |
acacttaatcatctttgcaattttctccttttccacaatgtcatcatcttcaaatttcaaccttaaagccactttaagaccatcacataacataacagca |
101 |
Q |
| |
|
||||||||||| |||||||||| |||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||| |
|
|
| T |
15032 |
acacttaatcacatttgcaatttcatccttttctacaatctcatcatcttcaaatttcaaccttattgccactttaagaccatcacttaacaaaacagca |
15131 |
T |
|
| Q |
102 |
ttcattgcttgttcggcaaacaatggccaagctactattggcaccccctcttgtatactttccaaagtcgaattccaaccacaatgacttaaaaatccac |
201 |
Q |
| |
|
|||||||||||||| ||||| || ||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15132 |
ttcattgcttgttctgcaaataaaggccaagctactattggcaccccctcttgcatactctccaaaactgaattccaaccacaatgacttaaaaatccac |
15231 |
T |
|
| Q |
202 |
caactgaattttgctttagtatttcaactt |
231 |
Q |
| |
|
|||||||| | || || ||||||||||||| |
|
|
| T |
15232 |
caactgaactatgtttaagtatttcaactt |
15261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 2 - 167
Target Start/End: Complemental strand, 1882 - 1717
Alignment:
| Q |
2 |
acacttaatcatctttgcaattttctccttttccacaatgtcatcatcttcaaatttcaaccttaaagccactttaagaccatcacataacataacagca |
101 |
Q |
| |
|
||||||||||| |||||| |||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1882 |
acacttaatcacatttgcagttttatccttttccacaatctcatcatcttcaaatttcaaccttattgccactttaagaccatcacataacataacagca |
1783 |
T |
|
| Q |
102 |
ttcattgcttgttcggcaaacaatggccaagctactattggcaccccctcttgtatactttccaaa |
167 |
Q |
| |
|
|||||||||||||| ||||| || ||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
1782 |
ttcattgcttgttctgcaaataaaggccaagctactattggcaccccctcttgcatactctccaaa |
1717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 1432 - 1390
Alignment:
| Q |
162 |
tccaaagtcgaattccaaccacaatgacttaaaaatccaccaa |
204 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||| ||||||| |
|
|
| T |
1432 |
tccaaagttgaactccaaccacaatgacttaaaaaaccaccaa |
1390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 8294441 - 8294483
Alignment:
| Q |
162 |
tccaaagtcgaattccaaccacaatgacttaaaaatccaccaa |
204 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||| ||||||| |
|
|
| T |
8294441 |
tccaaagttgaactccaaccacaatgacttaaaaacccaccaa |
8294483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 33257314 - 33257272
Alignment:
| Q |
162 |
tccaaagtcgaattccaaccacaatgacttaaaaatccaccaa |
204 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||| ||||||| |
|
|
| T |
33257314 |
tccaaagttgaactccaaccacaatgacttaaaaaaccaccaa |
33257272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 560444 - 560492
Alignment:
| Q |
156 |
atactttccaaagtcgaattccaaccacaatgacttaaaaatccaccaa |
204 |
Q |
| |
|
||||| |||||| | |||||||||||||||||| |||||||| |||||| |
|
|
| T |
560444 |
atactctccaaaattgaattccaaccacaatgagttaaaaatgcaccaa |
560492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3412 times since January 2019
Visitors: 4035