View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0635_low_18 (Length: 251)
Name: NF0635_low_18
Description: NF0635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0635_low_18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 50569502 - 50569259
Alignment:
| Q |
8 |
gagcagagaaaggattttccattactgttgaaatcattcctaaaagttccctatttgttttaagtaactataaccactaataatttaattatcaacatac |
107 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50569502 |
gagcagagaaagaattttccattactgttgaaatcattcctaaaagttccctatttgttttaagtaactataaccactaataatttaattatcaacatac |
50569403 |
T |
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| Q |
108 |
tcctagttactctgtcaactagcaacaccataaacttcacaaataaaaccagataaatgaaaatctaatgcactatatacaaaatcacacggcttctagc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50569402 |
tcctagttactctgtcaactagcaacaccataaacttcacaaataaaaccagataaatgaaaatctaatgcactatatacaaaatcacacggcttctagc |
50569303 |
T |
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| Q |
208 |
actctttacatttgaaagccatagtttgaatacccatatgcact |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50569302 |
actctttacatttgaaagccatagtttgaatacccatatgcact |
50569259 |
T |
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