View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0635_low_6 (Length: 444)
Name: NF0635_low_6
Description: NF0635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0635_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 38874608 - 38874301
Alignment:
| Q |
1 |
gttacagaaacaacttatacataaaaacttatacgataaatgcataattaagttgtttatcccagaaataaatacttaaaataactattcatttacaaaa |
100 |
Q |
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| T |
38874608 |
gttacagaaacaacttatacataaacacttatacgataaatgcataattaagttgtatatcccagaaataaatacttaaaataactattcatttacaaaa |
38874509 |
T |
|
| Q |
101 |
cggttatcgaaatgaaagcatgtagttacatacatgagaaccgagtctggcattgtgaaaagctttaagaacacgggtggtattgtatgcaactaaatta |
200 |
Q |
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| T |
38874508 |
cggttatcgaaatgaaagcatgtagttacatacatgagaaccaagtctggcattgtgaaaagctttaagaacacgggtggtattgtatgcaactaaatta |
38874409 |
T |
|
| Q |
201 |
tccactgctctgaattctgaattcaatgaatcaacggcttcaataacctgcattgcaacaaaattaactctgaatggttttgaagcagcgaagagtgagc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38874408 |
tccactgctctgaattctgaattcaatgaatcaacggcttcaataacctgcattgcaacaaaattaactctgaatggttttgaagcagcgaagaatgagc |
38874309 |
T |
|
| Q |
301 |
gagtacct |
308 |
Q |
| |
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|||||||| |
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| T |
38874308 |
gagtacct |
38874301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 38713202 - 38713258
Alignment:
| Q |
6 |
agaaacaacttatacataaaaacttatacgataaatgcataattaagttgtttatcc |
62 |
Q |
| |
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||||| |||||||||| || ||||||| ||||||||| |||||||||||||||||| |
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| T |
38713202 |
agaaataacttatacacaatcacttataagataaatgcttaattaagttgtttatcc |
38713258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 25507308 - 25507252
Alignment:
| Q |
6 |
agaaacaacttatacataaaaacttatacgataaatgcataattaagttgtttatcc |
62 |
Q |
| |
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||||| |||||||||||||| |||||| | | || ||| |||||||||||||||||| |
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| T |
25507308 |
agaaataacttatacataaacacttatcctaaaagtgcttaattaagttgtttatcc |
25507252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 10150712 - 10150657
Alignment:
| Q |
6 |
agaaacaacttatacataaaaacttatacgataaatgcataattaagttgtttatc |
61 |
Q |
| |
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||||| |||||||||||||| ||||||| |||| ||| ||||||||||||||||| |
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| T |
10150712 |
agaaataacttatacataaacacttatataataagtgcttaattaagttgtttatc |
10150657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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