View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0636_high_1 (Length: 783)
Name: NF0636_high_1
Description: NF0636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0636_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 209 - 581
Target Start/End: Complemental strand, 53033464 - 53033091
Alignment:
| Q |
209 |
ttatcttgggaaagttactagcaagtgccaaa-gtgtcttgcatatatttttcttttgaaggaaacaacgatgatagttaaacaccttaacttcttaatt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53033464 |
ttatcttgggaaagttactagcaagtgccaaaagtgtcttgcatatatttttcttttgaaggaaacaacgatgatagttaaacaccttaacttcttaatt |
53033365 |
T |
|
| Q |
308 |
aattacaattattattatagaggtaaaggagaataaattgaattgaatgaggtgataatgatgtgtgcatatataaaagttggacaaacctggtaaggca |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53033364 |
aattacaattattattatagaggtaaaggagaataaattgaattgaatgaggtgataatgatgtgtgcatatataaaagttggacaaacctggtaaggca |
53033265 |
T |
|
| Q |
408 |
ataaatgcatcagcttgtcgagccatttcggctttgcgttggtgcatgtccgatacagctcttacttctcccactgtttctccagttatctaaattaacc |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53033264 |
ataaatgcatcagcttgtcgagccatttcggctttgcgttggtgcatgtccgatacagctcttacttctcccactgtttctccagttatctaaattaacc |
53033165 |
T |
|
| Q |
508 |
aactaatcatacttaattaattaattcaactaaaaatacacatttaatcgttgtagtagtattgtaaaatccaa |
581 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
53033164 |
aactaatcatacttaattaattaattcaactaaaaatacacatttaatcgttgtagtagtattgtataatccaa |
53033091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 30 - 179
Target Start/End: Complemental strand, 53033627 - 53033471
Alignment:
| Q |
30 |
cttcgagggtgccatatccacctgttgaaatttaaatttgaaata-----------ctttttgtttggaaagggggtggtaataataataaggtaggagt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53033627 |
cttcgagggtgccatatccacctgttgaaatttaaatttgaaatagattagtaatactttttgtttggaaagggggtggtaataataataaggtaggagt |
53033528 |
T |
|
| Q |
119 |
aggtaactcactgcatgcataataacagtgcagatcagaaataggataaagtcacagcaaa |
179 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
53033527 |
aggta----actgcatgcataataacagtgcagatcagaaataggataaagtcaccgcaaa |
53033471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 394 - 466
Target Start/End: Complemental strand, 7884850 - 7884778
Alignment:
| Q |
394 |
aacctggtaaggcaataaatgcatcagcttgtcgagccatttcggctttgcgttggtgcatgtccgatacagc |
466 |
Q |
| |
|
||||||| ||||||||||| ||||| || ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7884850 |
aacctggcaaggcaataaaagcatcggcctgtcgagccatttcggccttgcgttggtgcatgtccgatacagc |
7884778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3254 times since January 2019
Visitors: 4030