View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0636_high_3 (Length: 544)
Name: NF0636_high_3
Description: NF0636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0636_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 30 - 534
Target Start/End: Complemental strand, 53039702 - 53039198
Alignment:
| Q |
30 |
ttctggtgggatatggaaagaatttcccacaattcgtgcatcacaggggagcttcatttcctgctaatgcgaaaactggttgcaaggatgggtggcagtg |
129 |
Q |
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| T |
53039702 |
ttctggtgggatatggaaagaatttcccacaattcgtgcatcacaggggagcttcaattcctgctaatgcgaaaactggttgcaaggacgggtggcagtg |
53039603 |
T |
|
| Q |
130 |
gcttgactcatccgatccgaatcccaacgtagctactggagcacttgttggtggacctttcttaaatgagacttacattgattctaggaacaattctatg |
229 |
Q |
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| T |
53039602 |
gcttgactcatccgatccgaatcccaatgtagctactggagcacttgttggtggacctttcttaaatgagacttacattgattctaggaacaattctatg |
53039503 |
T |
|
| Q |
230 |
caaggagaaccaagcacatataacagtgctgtcatagttggtctcttatcaagtttagtcaccacatcttcagcccttcaatccttctcctaaactatag |
329 |
Q |
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| T |
53039502 |
caaggagaaccaagcacatataacagtgctgtcatagttggtctcttatcaagtttagtcaccacatcttcggcccttcaatccttctcctaaactatag |
53039403 |
T |
|
| Q |
330 |
tatgtagcttctccatattcaattccactcaaaagaagttgcgatgcggatttaagttttatggctttattcatttccttatcatcacgtattattagtg |
429 |
Q |
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| T |
53039402 |
tatgtagcttctccatattcaattccactcaaaagaagttgcgacgcggatttaagttttatggctttattcatttccttatcatcacgtattattagtg |
53039303 |
T |
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| Q |
430 |
tatggatcgtgatactgtaactatacaatatattttgagtgtgaaccgtggtgtctggataggttagtcattaattaatgtatacaggtgaagtttgatt |
529 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53039302 |
tatggatcgtgatactgtaactatacaatatattttgagtgtgagccgtggtgtctggataggttagtcattaattaatgtatacaggtgaagtttgatt |
53039203 |
T |
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| Q |
530 |
ctctg |
534 |
Q |
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||||| |
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| T |
53039202 |
ctctg |
53039198 |
T |
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