View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0636_high_4 (Length: 390)
Name: NF0636_high_4
Description: NF0636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0636_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 26 - 380
Target Start/End: Complemental strand, 40883101 - 40882746
Alignment:
| Q |
26 |
catacacatgagacagagattgaatcccggatcatttgtttaagtagcccaaagtcccttacatttagaccaatctattgtaattatgatacgagaggcc |
125 |
Q |
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| T |
40883101 |
catacgcataagatagagattgaatcccggatcatttgtttaagtagcccaaagtccctaacatttagaccaatctattgtaattatgatacgagaggcc |
40883002 |
T |
|
| Q |
126 |
atttacatgcgccttgaaacttaaactatggtcgaaaataaattagaatgtagaaatcctcacttgagtttgatttaaagcatgtaaaaagggatgttag |
225 |
Q |
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| T |
40883001 |
atttacatgcgccttgaaacttaaactatggtcgaaaataaattagaatgtagaaatcctcacttgagtttgatttaaagcatgtaaaaagggttgttag |
40882902 |
T |
|
| Q |
226 |
gcgtaaaggaaatagtgatcccattgtcactagcctcataaaaagtttg----tggtcaaagtcattatcacatgctcgagtacagctacatgctgaaaa |
321 |
Q |
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| T |
40882901 |
gcgtaaaggaaatagtgatcccattgtcactagcctcataaaaagtttgtctttggtcaaagtcattatcacatgctcgagta---ttacatgctgaaaa |
40882805 |
T |
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| Q |
322 |
ttttatggataattgagacaaaaaataaatagaggattaaaagagtattactgtctctg |
380 |
Q |
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| T |
40882804 |
ttttatggataattgagacaaaaaataaatagaggattaaaagagtattactttctctg |
40882746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 257
Target Start/End: Original strand, 31023766 - 31023827
Alignment:
| Q |
196 |
tgatttaaagcatgtaaaaagggatgttaggcgtaaaggaaatagtgatcccattgtcacta |
257 |
Q |
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|||||| | ||||||||||| |||| |||||| || |||||||||| || |||||||||||| |
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| T |
31023766 |
tgattttaggcatgtaaaaaaggatcttaggcatagaggaaatagtaattccattgtcacta |
31023827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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