View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0636_high_9 (Length: 343)
Name: NF0636_high_9
Description: NF0636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0636_high_9 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 30 - 336
Target Start/End: Original strand, 36564614 - 36564919
Alignment:
| Q |
30 |
tattagagcccaaaacaaattaatggaaaacttnnnnnnnngttgataacaatatcaaattaattgttaattgacattgttttacaagatgatccttgtt |
129 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36564614 |
tattagagcccaaaacaaattaatggaaaacttaaaaaaaagttgataacaatatcaaattaattgttaattgacattgttttacaagattatccttgtt |
36564713 |
T |
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| Q |
130 |
aagatttatgttttactcataatatttattacaaattgcatgaaagtatataacatatattagagatatgttggtaacgaaataacttatgtaattaaaa |
229 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36564714 |
aagatttatgttttacccataatatttattacaaattgcatgaaaatatataacata-attagagataggttggtaacgaaataacttatgtaattaaaa |
36564812 |
T |
|
| Q |
230 |
agagaaaagatatttatagcgagatattagacaacgaaatcatcccgaaagcacgtggcaaaatgtttaatgctaacttagcagcccaaccaatatgttc |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| || || |
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| T |
36564813 |
agagaaaagatatttatagcgagatattagacaacgaaatcatcccaaaagcacgtggcaaaatgtttaatgctaacttaacagcccaaccaacattttt |
36564912 |
T |
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| Q |
330 |
tctgctc |
336 |
Q |
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||||||| |
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| T |
36564913 |
tctgctc |
36564919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 233 - 321
Target Start/End: Complemental strand, 26787878 - 26787790
Alignment:
| Q |
233 |
gaaaagatatttatagcgagatattagacaacgaaatcatcccgaaagcacgtggcaaaatgtttaatgctaacttagcagcccaacca |
321 |
Q |
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| T |
26787878 |
gaaaagatatttatagcgagatattagacagagacttcatcccgaaagcacgtggcaaaatgtttgatgctaatttagcagcccaacca |
26787790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 322
Target Start/End: Original strand, 225723 - 225794
Alignment:
| Q |
253 |
atattagacaacgaaatcatcccgaaagcacg--tggcaaaatgtttaatgctaacttagcagcccaaccaa |
322 |
Q |
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| T |
225723 |
atattagacaacgaaatcattctgaaagcacgcgtggtaaaatgtttgatgctaacttagcagcccagccaa |
225794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 322
Target Start/End: Complemental strand, 14591655 - 14591584
Alignment:
| Q |
253 |
atattagacaacgaaatcatcccgaaagcacg--tggcaaaatgtttaatgctaacttagcagcccaaccaa |
322 |
Q |
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|||||||||||||||||||| | ||||||||| ||| ||||||||| ||||||||||||||||||| |||| |
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| T |
14591655 |
atattagacaacgaaatcattctgaaagcacgcgtggtaaaatgtttgatgctaacttagcagcccagccaa |
14591584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 297
Target Start/End: Original strand, 19401664 - 19401727
Alignment:
| Q |
234 |
aaaagatatttatagcgagatattagacaacgaaatcatcccgaaagcacgtggcaaaatgttt |
297 |
Q |
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||||||||||||||| || | |||||||| |||||||||| |||||||||||||| ||||||| |
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| T |
19401664 |
aaaagatatttatagtgacaaattagacagagaaatcatccggaaagcacgtggcataatgttt |
19401727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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