View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0636_low_11 (Length: 383)

Name: NF0636_low_11
Description: NF0636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0636_low_11
NF0636_low_11
[»] chr3 (11 HSPs)
chr3 (1-383)||(3885446-3885828)
chr3 (121-257)||(911465-911601)
chr3 (112-379)||(3913162-3913429)
chr3 (187-377)||(4060242-4060432)
chr3 (100-153)||(5052031-5052084)
chr3 (187-299)||(4114798-4114910)
chr3 (112-150)||(2919671-2919709)
chr3 (187-257)||(4079971-4080041)
chr3 (112-257)||(4130092-4130237)
chr3 (205-241)||(7492146-7492182)
chr3 (109-149)||(11491067-11491107)
[»] chr1 (2 HSPs)
chr1 (1-212)||(14005039-14005250)
chr1 (187-257)||(13933594-13933664)
[»] scaffold0137 (1 HSPs)
scaffold0137 (213-383)||(1-171)
[»] chr5 (1 HSPs)
chr5 (112-154)||(16446955-16446997)


Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 3885446 - 3885828
Alignment:
Q  1 tttagtgctggtgaaaagggaagtagaatcattgtcacgacacgagatgaaagtgttgcaaggtctctgcaaacctcttttcctatctaccatttgctgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3885446 tttagtgctggtgaaaagggaagtagaatcattgtcacgacacgagatgaaagtgttgcaaggtctatgcaaacctcttttcctatctaccatttgctgc 3885545  T
Q  101 ctttggcgagcgaagattgctggtctttacttgccaaacatgcatttggaccatataattgcagaaaccggtcgaacctagaatttattggcaaagaaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3885546 ctttggcgagcgaagattgctggtctttacttgccaaacatgcatttggaccatataattgcagaaaccggtcgaacctagaatttattggcaaagaaat 3885645  T
Q  201 tgtgaaaaagtgtgatggcttaccaatagctgcagtagcactaggcggtcttcttcgatccgagttatcagaaaatcgctggaacaaggtattaaaaagc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3885646 tgtgaaaaagtgtgatggcttaccaatagctgcagtagcactaggcggtcttcttcgatccgagttatcagaaaatcgctggaacaaggtattaaaaagc 3885745  T
Q  301 aacatttgggatttaccaaatgttaaggtgcttccggctttgctattgagttataatcatctaccttctcctttaaagcaatg 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3885746 aacatttgggatttaccaaatgttaaggtgcttccggctttgctattgagttatcatcatctaccttctcctttaaagcaatg 3885828  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 121 - 257
Target Start/End: Complemental strand, 911601 - 911465
Alignment:
Q  121 tggtctttacttgccaaacatgcatttggaccatataattgcagaaaccggtcgaacctagaatttattggcaaagaaattgtgaaaaagtgtgatggct 220  Q
    |||||||||||||||||||||||||||||| ||| ||||| | || | ||||| ||||||||||| ||||||||||||||    |  || |||||||| |    
T  911601 tggtctttacttgccaaacatgcatttggagcatgtaatttccgacaacggtccaacctagaattgattggcaaagaaatctctacgaaatgtgatggat 911502  T
Q  221 taccaatagctgcagtagcactaggcggtcttcttcg 257  Q
    ||||| |||||||||||||||| || |||||||||||    
T  911501 taccattagctgcagtagcacttgggggtcttcttcg 911465  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 112 - 379
Target Start/End: Complemental strand, 3913429 - 3913162
Alignment:
Q  112 gaagattgctggtctttacttgccaaacatgcatttggaccatataattgcagaaaccggtcgaacctagaatttattggcaaagaaattgtgaaaaagt 211  Q
    |||||||| ||||||||||||||  | || |||||||||||  |||| ||||   | |  ||||| || ||| | ||||||||||||||||  ||||  |    
T  3913429 gaagattgttggtctttacttgcgcatcacgcatttggaccgaataactgcaaggaacaatcgaaacttgaagtaattggcaaagaaattgcaaaaagat 3913330  T
Q  212 gtgatggcttaccaatagctgcagtagcactaggcggtcttcttcgatccgagttatcagaaaatcgctggaacaaggtattaaaaagcaacatttggga 311  Q
    ||| |||||| ||  ||||||||| |||  | || |||||||| ||  || | |||||||||||   |||||| |||||||||||||| ||||| |||||    
T  3913329 gtggtggcttgccgttagctgcagaagccgttgggggtcttctccgcaccaaattatcagaaaagaactggaataaggtattaaaaagtaacatctggga 3913230  T
Q  312 tttaccaaatgttaaggtgcttccggctttgctattgagttataatcatctaccttctcctttaaagc 379  Q
    ||| |||||| | || ||||| |||||| | |||||||| ||| |  |||| ||| ||||||| ||||    
T  3913229 tttgccaaatatcaaagtgctaccggctcttctattgagctatcactatcttcctgctcctttgaagc 3913162  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 377
Target Start/End: Complemental strand, 4060432 - 4060242
Alignment:
Q  187 attggcaaagaaattgtgaaaaagtgtgatggcttaccaatagctgcagtagcactaggcggtcttcttcgatccgagttatcagaaaatcgctggaaca 286  Q
    ||||||| |||||||   ||||| |||||||| |||||| |||||||| ||||| |||| |||||||||||  || |  ||||| || ||   |||||      
T  4060432 attggcagagaaatttcaaaaaaatgtgatggtttaccattagctgcaatagcaataggaggtcttcttcgcaccaaactatcacaagattattggaatg 4060333  T
Q  287 aggtattaaaaagcaacatttgggatttaccaaatgttaaggtgcttccggctttgctattgagttataatcatctaccttctcctttaaa 377  Q
    | ||||||||||| || |||||||| ||  |||||| | ||||||  ||  || |||||||||| ||| ||||||| ||| ||||||||||    
T  4060332 atgtattaaaaagtaatatttgggaattgacaaatgatgaggtgcaaccatctctgctattgagctatcatcatcttcctgctcctttaaa 4060242  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 153
Target Start/End: Original strand, 5052031 - 5052084
Alignment:
Q  100 cctttggcgagcgaagattgctggtctttacttgccaaacatgcatttggacca 153  Q
    |||||||  |||||||||||||||||| || |||||| ||||||||||||||||    
T  5052031 cctttggaaagcgaagattgctggtctatagttgccagacatgcatttggacca 5052084  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 299
Target Start/End: Complemental strand, 4114910 - 4114798
Alignment:
Q  187 attggcaaagaaattgtgaaaaagtgtgatggcttaccaatagctgcagtagcactaggcggtcttcttcgatccgagttatcagaaaatcgctggaaca 286  Q
    ||||||| ||||||||  ||||| |||||||| |||||| |||||||| | ||| |||| |||||||||||  || | |||||| || ||  |||||||     
T  4114910 attggcagagaaattgccaaaaaatgtgatggtttaccattagctgcaatggcaataggaggtcttcttcgcaccaaattatcacaagattactggaacg 4114811  T
Q  287 aggtattaaaaag 299  Q
    | |||||||||||    
T  4114810 atgtattaaaaag 4114798  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 150
Target Start/End: Original strand, 2919671 - 2919709
Alignment:
Q  112 gaagattgctggtctttacttgccaaacatgcatttgga 150  Q
    |||||||||||||||||| |||||| |||||||||||||    
T  2919671 gaagattgctggtctttagttgccagacatgcatttgga 2919709  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 257
Target Start/End: Complemental strand, 4080041 - 4079971
Alignment:
Q  187 attggcaaagaaattgtgaaaaagtgtgatggcttaccaatagctgcagtagcactaggcggtcttcttcg 257  Q
    ||||||| |||||||   ||||| |||||||| |||||| |||||||| ||||| |||| |||||||||||    
T  4080041 attggcagagaaatttcaaaaaaatgtgatggtttaccattagctgcaatagcaatagggggtcttcttcg 4079971  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 257
Target Start/End: Original strand, 4130092 - 4130237
Alignment:
Q  112 gaagattgctggtctttacttgccaaacatgcatttggaccatataattgcagaaaccggtcgaacctagaatttattggcaaagaaattgtgaaaaagt 211  Q
    |||||||| |||||||||||||||| ||||||||||| | ||  ||| | |  | | || || || ||||||   ||||| | ||||||||  ||||| |    
T  4130092 gaagattgttggtctttacttgccagacatgcatttgtaacaagtaactaccaacaacgatccaatctagaaaaaattggtagagaaattgccaaaaaat 4130191  T
Q  212 gtgatggcttaccaatagctgcagtagcactaggcggtcttcttcg 257  Q
    ||||||| |||||| |||||||| ||||||| || ||| |||||||    
T  4130192 gtgatgggttaccattagctgcaatagcacttggaggttttcttcg 4130237  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 7492182 - 7492146
Alignment:
Q  205 aaaaagtgtgatggcttaccaatagctgcagtagcac 241  Q
    |||||||||||||| |||||||| |||||||||||||    
T  7492182 aaaaagtgtgatggattaccaatggctgcagtagcac 7492146  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 11491107 - 11491067
Alignment:
Q  109 agcgaagattgctggtctttacttgccaaacatgcatttgg 149  Q
    ||||||||||| ||||||||| |||||| ||||||||||||    
T  11491107 agcgaagattgttggtctttagttgccagacatgcatttgg 11491067  T

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Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 14005250 - 14005039
Alignment:
Q  1 tttagtgctggtgaaaagggaagtagaatcattgtcacgacacgagatgaaagtgttgcaaggtctctgcaaacctcttttcctatctaccatttgctgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14005250 tttagtgctggtgaaaagggaagtagaatcattgtcacgacacgagatgaaagtgttgcaaggtctatgcaaacctcttttcctatctaccatttgctgc 14005151  T
Q  101 ctttggcgagcgaagattgctggtctttacttgccaaacatgcatttggaccatataattgcagaaaccggtcgaacctagaatttattggcaaagaaat 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14005150 ctttggcgagtgaagattgctggtctttacttgccaaacatgcatttggaccatataattgcagaaaccggtcgaacctagaatttattggcaaagaaat 14005051  T
Q  201 tgtgaaaaagtg 212  Q
    ||||||||||||    
T  14005050 tgtgaaaaagtg 14005039  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 257
Target Start/End: Original strand, 13933594 - 13933664
Alignment:
Q  187 attggcaaagaaattgtgaaaaagtgtgatggcttaccaatagctgcagtagcactaggcggtcttcttcg 257  Q
    ||||||| ||||||||  ||||| ||||||||||| ||| |||||||| ||||| |||| |||||||||||    
T  13933594 attggcagagaaattgccaaaaaatgtgatggcttgccattagctgcaatagcaatagggggtcttcttcg 13933664  T

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Target: scaffold0137 (Bit Score: 163; Significance: 6e-87; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 213 - 383
Target Start/End: Original strand, 1 - 171
Alignment:
Q  213 tgatggcttaccaatagctgcagtagcactaggcggtcttcttcgatccgagttatcagaaaatcgctggaacaaggtattaaaaagcaacatttgggat 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1 tgatggcttaccaatagctgcagtagcactaggcggtcttcttcgatccgagttatcagaaaatcgctggaacaaggtattaaaaagcaacatttgggat 100  T
Q  313 ttaccaaatgttaaggtgcttccggctttgctattgagttataatcatctaccttctcctttaaagcaatg 383  Q
    ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  101 ttatcaaatgttaaggtgcttccggctttgctattgagttattatcatctaccttctcctttaaagcaatg 171  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 154
Target Start/End: Original strand, 16446955 - 16446997
Alignment:
Q  112 gaagattgctggtctttacttgccaaacatgcatttggaccat 154  Q
    |||||||||||||||||| |||||| |||||||||||||||||    
T  16446955 gaagattgctggtctttaattgccagacatgcatttggaccat 16446997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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