View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0636_low_12 (Length: 378)
Name: NF0636_low_12
Description: NF0636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0636_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 163 - 374
Target Start/End: Complemental strand, 3453326 - 3453115
Alignment:
| Q |
163 |
ctaaaggaagtatcttaacacatgaaagcgacaacatattagtttaaaattaagcctcgatacctgaaaataccgaaggacttaatccatctatgaactt |
262 |
Q |
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| T |
3453326 |
ctaaaggaagcatcttaacacatgaaagcgacaacatattaggttaaaattaagcctcggtacctgaaaataccgaaggacttaatccatctatgaattt |
3453227 |
T |
|
| Q |
263 |
agctgattaaataatgttcactaaatatataggagaggatcactattcaaactcaatagaaaacacattcttagaaagtcgaacaaagattagtcacacc |
362 |
Q |
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||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||| |
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| T |
3453226 |
agctgattaaataatgttcgctaaatatatgggagaggatcactattcaaactcaatagaaaacacattattggagagtcgaacaaagattagtcacacc |
3453127 |
T |
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| Q |
363 |
aaattattattt |
374 |
Q |
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|||||||||||| |
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| T |
3453126 |
aaattattattt |
3453115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 3454650 - 3454514
Alignment:
| Q |
22 |
catcatctgaattgtttggaagaacccaaacgattgtgaggtgaatcaaattttgattagtttatatttacaccaccacccaactggcaattac----ta |
117 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
3454650 |
catcatatgaattgtttggaagaacccaaacgattgggaggtgaatcaaattttgattagtttatatttacaccaccacccaactgtcaattactagata |
3454551 |
T |
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| Q |
118 |
gaaccccttcttaaaagaatcgaagagttatcacaat |
154 |
Q |
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| T |
3454550 |
gaaccccttcttaaaagaatcgaagagttatcacaat |
3454514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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