View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0636_low_13 (Length: 373)
Name: NF0636_low_13
Description: NF0636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0636_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 83 - 365
Target Start/End: Complemental strand, 39414477 - 39414195
Alignment:
| Q |
83 |
tagatatcttgattcaaccagagatctgcagtactggagataaaagtattcgtcttctaatgaagcaagtttgttgacatttcaccaaggacatgcacaa |
182 |
Q |
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| T |
39414477 |
tagatatcttgattcaaccagagatctgcagtactcgagataaaagtattcgtcttctaatgaagcaagtttgttgacatttcaccaaggacatgcacaa |
39414378 |
T |
|
| Q |
183 |
gctacaaactgtagcttctaaagcatcaatgcgccaaaacaaacatgtgttaacttgttaagtgaatagacagacatgcaaagaccatcattaaaggtcc |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39414377 |
gctacaaactgtagcttctaaagcatcaatgcgccaaaacaaacatgtgttaacttgttaagtgaatagacagacatgcaaagaccatcattaaaggtcc |
39414278 |
T |
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| Q |
283 |
agatatgcttaaagaaacttatgataggtaaccaaccaaatttgatagagatgacaatgcgatcatttcctcacattcatctc |
365 |
Q |
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| T |
39414277 |
agatatgcttaaagaaacttatgataggtaaccaaccaaatttgatagagatgacaatgcgatcatttcctcacattcatctc |
39414195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 39415142 - 39415086
Alignment:
| Q |
31 |
ggataaaagtataagtcttagtttactaagtactcaagatttgcatttttactagat |
87 |
Q |
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| T |
39415142 |
ggataaaagtataagtcttagtttactaagtactcaagatttgcatttttactagat |
39415086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 41101034 - 41100998
Alignment:
| Q |
160 |
catttcaccaaggacatgcacaagctacaaactgtag |
196 |
Q |
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| T |
41101034 |
catttcaccatggaaatgcacaagctacaaactgtag |
41100998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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