View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0636_low_17 (Length: 294)
Name: NF0636_low_17
Description: NF0636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0636_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 5e-93; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 45 - 225
Target Start/End: Complemental strand, 50749445 - 50749265
Alignment:
| Q |
45 |
ctgtgatgacagaacataccttggcgatctgtagtgcaaggaatgaaatccacacaaatgctagtagcccaaactccttccagtatacattttcaattat |
144 |
Q |
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| T |
50749445 |
ctgtgatgacagaacataccttggcaatctgtagtgcaaggaatgaaatccacacaaatgctagtagcccaaactccttccagtatacattttcaattat |
50749346 |
T |
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| Q |
145 |
agacacctgcaattgaacgaattattatatcaataatgtgccaattaagtggtaagagtttgtccttctaatctataatga |
225 |
Q |
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| T |
50749345 |
agacacctgcaattgaacgaattattatatcaataatgtgtcaattaagtggtaagagtttgtccttctaatctataatga |
50749265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 156
Target Start/End: Complemental strand, 50876168 - 50876057
Alignment:
| Q |
45 |
ctgtgatgacagaacataccttggcgatctgtagtgcaaggaatgaaatccacacaaatgctagtagcccaaactccttccagtatacattttcaattat |
144 |
Q |
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| T |
50876168 |
ctgtgatggaagagcaaaccttggcaatctgtgctgcaatgagtgaaacccaaacaaatgctagaagtccaaactccttccggcacacattttcaattat |
50876069 |
T |
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| Q |
145 |
agacacctgcaa |
156 |
Q |
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| T |
50876068 |
agtgacctgcaa |
50876057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 50813391 - 50813440
Alignment:
| Q |
45 |
ctgtgatgacagaacataccttggcgatctgtagtgcaaggaatgaaatc |
94 |
Q |
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| T |
50813391 |
ctgtgatgatagaacaaaccttgacaatctgtagtgcaaggaatgaaatc |
50813440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 50862473 - 50862424
Alignment:
| Q |
45 |
ctgtgatgacagaacataccttggcgatctgtagtgcaaggaatgaaatc |
94 |
Q |
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| T |
50862473 |
ctgtgatgatagaacaaaccttgacaatctgtagtgcaaggaatgaaatc |
50862424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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