View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0636_low_19 (Length: 262)

Name: NF0636_low_19
Description: NF0636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0636_low_19
NF0636_low_19
[»] chr7 (3 HSPs)
chr7 (48-240)||(4633892-4634083)
chr7 (158-232)||(32238918-32238991)
chr7 (149-232)||(29676894-29676976)
[»] chr1 (5 HSPs)
chr1 (152-240)||(23971054-23971141)
chr1 (158-240)||(28538506-28538587)
chr1 (86-144)||(28538655-28538713)
chr1 (149-240)||(2900411-2900498)
chr1 (149-240)||(27908301-27908391)
[»] chr2 (8 HSPs)
chr2 (162-240)||(19569582-19569659)
chr2 (149-240)||(17673424-17673514)
chr2 (144-240)||(37081332-37081427)
chr2 (149-234)||(1644616-1644700)
chr2 (149-234)||(17628353-17628437)
chr2 (87-144)||(24578775-24578832)
chr2 (86-144)||(1644759-1644817)
chr2 (94-144)||(17628244-17628294)
[»] chr8 (3 HSPs)
chr8 (83-144)||(15151457-15151518)
chr8 (152-232)||(16822006-16822085)
chr8 (149-240)||(15151308-15151398)
[»] chr4 (3 HSPs)
chr4 (149-240)||(6136102-6136192)
chr4 (158-240)||(2946660-2946741)
chr4 (149-231)||(17405158-17405239)
[»] chr3 (2 HSPs)
chr3 (149-228)||(9021790-9021868)
chr3 (86-145)||(9021696-9021755)
[»] chr5 (4 HSPs)
chr5 (86-144)||(13502337-13502395)
chr5 (158-240)||(15023590-15023671)
chr5 (158-233)||(21714326-21714400)
chr5 (158-233)||(21788240-21788314)
[»] chr6 (2 HSPs)
chr6 (173-239)||(13627831-13627896)
chr6 (158-240)||(27991539-27991620)


Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 48 - 240
Target Start/End: Original strand, 4633892 - 4634083
Alignment:
Q  48 ggcaaagattatagaaagaggtctctttataatactttatgttgtgatgatataaacatttaattacgatccttgtatgttgttttgataaacatgtcta 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4633892 ggcaaagattatagaaagaggtctctttataatactttatgttgtgatgatacaaacatttaattacgatccttgtatgttgttttgataaacatgtcta 4633991  T
Q  148 tcttatagccaattggttcacatttcaaagattcatatttgtatttttcttgcacaatgtcatattgaaatgtttaatagtctttccgttcat 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  4633992 tcttatagccaattggttcacatttcaaagattcatatttgtatttttcttgcataatgtcata-tgaaatgtttaatagtctttccgttcat 4634083  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 232
Target Start/End: Original strand, 32238918 - 32238991
Alignment:
Q  158 aattggttcacatttcaaagattcatatttgtatttttcttgcacaatgtcatattgaaatgtttaatagtcttt 232  Q
    |||| ||||||| || ||||||||||| |||  ||||| ||||||||||||| | |||||| |||||||||||||    
T  32238918 aattagttcacactttaaagattcatacttgcgtttttgttgcacaatgtca-aatgaaatatttaatagtcttt 32238991  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 29676894 - 29676976
Alignment:
Q  149 cttatagccaattggttcacatttcaaagattcatatttgtatttttcttgcacaatgtcat--attgaaatgtttaatagtcttt 232  Q
    |||||||  ||||||||||| ||||||| |||||||||||   | |||||||||||||| ||  | |||||| |||||||||||||    
T  29676894 cttatagttaattggttcacttttcaaatattcatatttg---tgttcttgcacaatgtgatcaaatgaaatatttaatagtcttt 29676976  T

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Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 152 - 240
Target Start/End: Original strand, 23971054 - 23971141
Alignment:
Q  152 atagccaattggttcacatttcaaagattcatatttgtatttttcttgcacaatgtcatattgaaatgtttaatagtctttccgttcat 240  Q
    ||||| |||||||||||| |||||||||||||| |||| ||||||||||||||||||| | ||||||||||||||||||||| ||||||    
T  23971054 atagctaattggttcacacttcaaagattcatacttgtgtttttcttgcacaatgtca-aatgaaatgtttaatagtctttcagttcat 23971141  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 28538587 - 28538506
Alignment:
Q  158 aattggttcacatttcaaagattcatatttgtatttttcttgcacaatgtcatattgaaatgtttaatagtctttccgttcat 240  Q
    ||||||||||||||||||||||||||| |||| || |||| ||||||||||| | |||||||||| ||| ||||||| |||||    
T  28538587 aattggttcacatttcaaagattcatacttgtgttcttctagcacaatgtca-aatgaaatgtttcataatctttccattcat 28538506  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 28538713 - 28538655
Alignment:
Q  86 atgttgtgatgatataaacatttaattacgatccttgtatgttgttttgataaacatgt 144  Q
    ||||||| || ||||||||||| ||||| |||| |||| ||||||||||||||||||||    
T  28538713 atgttgtaataatataaacattgaattatgatcgttgtgtgttgttttgataaacatgt 28538655  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 240
Target Start/End: Complemental strand, 2900498 - 2900411
Alignment:
Q  149 cttatagccaattggttcacatttcaaagattcatatttgtatttttcttgcacaatgtcatattgaaatgtttaatagtctttccgttcat 240  Q
    |||| ||| ||||||||  ||||||||||||| ||| |||| ||   |||||||||||||| || ||||||||||||||||||||| |||||    
T  2900498 cttagagctaattggttgtcatttcaaagatttatacttgtgtt---cttgcacaatgtcaaat-gaaatgtttaatagtctttccattcat 2900411  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 240
Target Start/End: Complemental strand, 27908391 - 27908301
Alignment:
Q  149 cttatagccaattggttcacatttcaaagattcatatttgtatttttcttgcacaatgtcatattgaaatgtttaatagtctttccgttcat 240  Q
    |||| ||| ||||||||||||||||||| ||||||| |||| || || ||||||||||| | | |||||| |||| || ||||||| |||||    
T  27908391 cttagagctaattggttcacatttcaaatattcatacttgtgttcttgttgcacaatgtga-aatgaaatatttattaatctttccattcat 27908301  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 19569659 - 19569582
Alignment:
Q  162 ggttcacatttcaaagattcatatttgtatttttcttgcacaatgtcatattgaaatgtttaatagtctttccgttcat 240  Q
    |||||||| |||||| |||||||||||| ||||||||||||||||||| | |||||||||||||||||||||| |||||    
T  19569659 ggttcacaattcaaaaattcatatttgtgtttttcttgcacaatgtca-aatgaaatgtttaatagtctttccattcat 19569582  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 17673424 - 17673514
Alignment:
Q  149 cttatagccaattggttcacatttcaaagattcatatttgtatttttcttgcacaatgtcatattgaaatgtttaatagtctttccgttcat 240  Q
    |||| ||| ||||||||||||||||||||||||||  |||| || ||||||||||| |||| | |||||||||| ||||||||||| |||||    
T  17673424 cttagagctaattggttcacatttcaaagattcatgcttgtgttcttcttgcacaacgtca-aatgaaatgtttcatagtctttccattcat 17673514  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 37081332 - 37081427
Alignment:
Q  144 tctatcttatagccaattggttcacatttcaaagattcatatttgtatttttcttgcacaatgtcatattgaaatgtttaatagtctttccgttcat 240  Q
    |||| |||| ||| ||| ||||||||||||||||||||||| |||| || |||||||||||| | | | | |||||||| |||||||||||||||||    
T  37081332 tctaacttagagctaatcggttcacatttcaaagattcatacttgtgttcttcttgcacaatat-aaaataaaatgtttgatagtctttccgttcat 37081427  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 234
Target Start/End: Complemental strand, 1644700 - 1644616
Alignment:
Q  149 cttatagccaattggttcacatttcaaagattcatatttgtatttttcttgcacaatgtcatattgaaatgtttaatagtctttcc 234  Q
    |||| ||| |||| ||||||||||||||||||||||  | |  | |||||||||||||||| | ||||||||||||||||||||||    
T  1644700 cttagagctaatttgttcacatttcaaagattcatacctatgctcttcttgcacaatgtca-aatgaaatgtttaatagtctttcc 1644616  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 234
Target Start/End: Original strand, 17628353 - 17628437
Alignment:
Q  149 cttatagccaattggttcacatttcaaagattcatatttgtatttttcttgcacaatgtcatattgaaatgtttaatagtctttcc 234  Q
    |||| ||| ||||| ||||||||||||||||||||  |||| || ||||||||||| |||| | |||||||||| |||||||||||    
T  17628353 cttagagctaattgattcacatttcaaagattcatgcttgtgttcttcttgcacaacgtca-aatgaaatgtttcatagtctttcc 17628437  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 24578832 - 24578775
Alignment:
Q  87 tgttgtgatgatataaacatttaattacgatccttgtatgttgttttgataaacatgt 144  Q
    ||||||||||||||||||||| ||||| ||||| ||| || |||||||||||||||||    
T  24578832 tgttgtgatgatataaacattgaattatgatccatgtgtgctgttttgataaacatgt 24578775  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 1644817 - 1644759
Alignment:
Q  86 atgttgtgatgatataaacatttaattacgatccttgtatgttgttttgataaacatgt 144  Q
    |||||||||||||||||||||| || || ||||| ||| || |||||||||||||||||    
T  1644817 atgttgtgatgatataaacattgaaatatgatccatgtgtgctgttttgataaacatgt 1644759  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 17628244 - 17628294
Alignment:
Q  94 atgatataaacatttaattacgatccttgtatgttgttttgataaacatgt 144  Q
    |||||||||||||| ||||| ||||| ||| || |||||||||||||||||    
T  17628244 atgatataaacattgaattatgatccatgtgtgctgttttgataaacatgt 17628294  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 15151518 - 15151457
Alignment:
Q  83 tttatgttgtgatgatataaacatttaattacgatccttgtatgttgttttgataaacatgt 144  Q
    ||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||| ||||    
T  15151518 tttatgttgtgatgatataaacattgaattatgatccttgtgtgttgttttgataaatatgt 15151457  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 16822085 - 16822006
Alignment:
Q  152 atagccaattggttcacatttcaaagattcatatttgtatttttcttgcacaatgtcatattgaaatgtttaatagtcttt 232  Q
    ||||| |||||||||||| ||||| |||||||| |||| ||||||||| ||||||||| | ||||||||||||||||||||    
T  16822085 atagctaattggttcacacttcaatgattcatacttgtgtttttcttgtacaatgtca-aatgaaatgtttaatagtcttt 16822006  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 240
Target Start/End: Complemental strand, 15151398 - 15151308
Alignment:
Q  149 cttatagccaattggttcacatttcaaagattcatatttgtatttttcttgcacaatgtcatattgaaatgtttaatagtctttccgttcat 240  Q
    |||| |||||||| |||||||| |||| |||| ||| |||| || |||||||| ||||||| || ||||||||||||||||||| |||||||    
T  15151398 cttagagccaattcgttcacatatcaatgatttatacttgtgttcttcttgcataatgtcaaat-gaaatgtttaatagtcttttcgttcat 15151308  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 240
Target Start/End: Complemental strand, 6136192 - 6136102
Alignment:
Q  149 cttatagccaattggttcacatttcaaagattcatatttgtatttttcttgcacaatgtcatattgaaatgtttaatagtctttccgttcat 240  Q
    |||| ||| ||||| |||||||||||||||||||||  ||| || |||||||||||| ||| | |||||||||||||||||||||| |||||    
T  6136192 cttagagctaattgattcacatttcaaagattcatacatgtgttcttcttgcacaatatca-aatgaaatgtttaatagtctttccattcat 6136102  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 2946741 - 2946660
Alignment:
Q  158 aattggttcacatttcaaagattcatatttgtatttttcttgcacaatgtcatattgaaatgtttaatagtctttccgttcat 240  Q
    |||||| || |||||||||||||||||  ||| || |||||||||||||||| | ||||||||| |||||||||||| |||||    
T  2946741 aattggctcgcatttcaaagattcatacatgtgttcttcttgcacaatgtca-aatgaaatgttaaatagtctttccattcat 2946660  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 231
Target Start/End: Original strand, 17405158 - 17405239
Alignment:
Q  149 cttatagccaattggttcacatttcaaagattcatatttgtatttttcttgcacaatgtcatattgaaatgtttaatagtctt 231  Q
    |||| ||| |||||||||||| || ||| ||||||| |||| || |||||||||||||||| | |||||||||||||||||||    
T  17405158 cttagagctaattggttcacacttaaaaaattcatacttgtgttcttcttgcacaatgtca-aatgaaatgtttaatagtctt 17405239  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 228
Target Start/End: Original strand, 9021790 - 9021868
Alignment:
Q  149 cttatagccaattggttcacatttcaaagattcatatttgtatttttcttgcacaatgtcatattgaaatgtttaatagt 228  Q
    |||| ||| |||||||| |||||||||||||||||| |||| || |||||||||||||||| | ||||||||||||||||    
T  9021790 cttagagctaattggtttacatttcaaagattcatacttgtgttcttcttgcacaatgtca-aatgaaatgtttaatagt 9021868  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 9021696 - 9021755
Alignment:
Q  86 atgttgtgatgatataaacatttaattacgatccttgtatgttgttttgataaacatgtc 145  Q
    |||||||||||||||||||||| ||||| ||||| ||| || ||||||||||||| ||||    
T  9021696 atgttgtgatgatataaacattgaattatgatccatgtctgctgttttgataaacttgtc 9021755  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 13502337 - 13502395
Alignment:
Q  86 atgttgtgatgatataaacatttaattacgatccttgtatgttgttttgataaacatgt 144  Q
    |||||||||| ||||||||||| ||||| ||||| ||| ||||||||||||||||||||    
T  13502337 atgttgtgataatataaacattgaattatgatccatgtgtgttgttttgataaacatgt 13502395  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 240
Target Start/End: Original strand, 15023590 - 15023671
Alignment:
Q  158 aattggttcacatttcaaagattcatatttgtatttttcttgcacaatgtcatattgaaatgtttaatagtctttccgttcat 240  Q
    ||||| ||||||||||||| ||||||| |||| || || ||| ||||||||| | |||||||||||||||||||||| |||||    
T  15023590 aattgattcacatttcaaaaattcatacttgtgttctttttgtacaatgtca-aatgaaatgtttaatagtctttccattcat 15023671  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 21714400 - 21714326
Alignment:
Q  158 aattggttcacatttcaaagattcatatttgtatttttcttgcacaatgtcatattgaaatgtttaatagtctttc 233  Q
    ||||||||||||||||||| ||||||| |||| || ||| |||||||| ||| | |||||| ||||||||||||||    
T  21714400 aattggttcacatttcaaatattcatacttgtgttcttcatgcacaatatca-aatgaaatatttaatagtctttc 21714326  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 21788314 - 21788240
Alignment:
Q  158 aattggttcacatttcaaagattcatatttgtatttttcttgcacaatgtcatattgaaatgtttaatagtctttc 233  Q
    ||||||||||||||||||| ||||||| |||| || ||| |||||||| ||| | |||||| ||||||||| ||||    
T  21788314 aattggttcacatttcaaatattcatacttgtgttcttcatgcacaatatca-aatgaaatatttaatagtttttc 21788240  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 239
Target Start/End: Complemental strand, 13627896 - 13627831
Alignment:
Q  173 caaagattcatatttgtatttttcttgcacaatgtcatattgaaatgtttaatagtctttccgttca 239  Q
    ||||||||||||||||| ||||||||||| ||||||| | | ||||||||||||||| || ||||||    
T  13627896 caaagattcatatttgtgtttttcttgcataatgtca-aataaaatgtttaatagtcatttcgttca 13627831  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 240
Target Start/End: Original strand, 27991539 - 27991620
Alignment:
Q  158 aattggttcacatttcaaagattcatatttgtatttttcttgcacaatgtcatattgaaatgtttaatagtctttccgttcat 240  Q
    ||||| |||||||||||| |||||||| |||| || || ||||| ||||| | || ||||||||||||||||||||| |||||    
T  27991539 aattgattcacatttcaatgattcatacttgtgttctttttgcataatgtaaaat-gaaatgtttaatagtctttccattcat 27991620  T

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