View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0636_low_2 (Length: 853)

Name: NF0636_low_2
Description: NF0636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0636_low_2
NF0636_low_2
[»] chr7 (1 HSPs)
chr7 (32-845)||(25131234-25132039)


Alignment Details
Target: chr7 (Bit Score: 686; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 686; E-Value: 0
Query Start/End: Original strand, 32 - 845
Target Start/End: Original strand, 25131234 - 25132039
Alignment:
Q  32 tgattcatcttatatgtttttagtctataaacaagtttggtgtgtagcttagtgtaagttttcaatctaatggcagagctactttttatcagtctagtca 131  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  25131234 tgattcatcttatatgtttttagtctatgaacaagtttgatgtgtagctaagtgtaagttttcaatctaatggcagagctactttttagcagtctagtca 25131333  T
Q  132 aaccttcaattttgattcaaaagttaccaaacggctctttttctttcttgtttttactttctaaaatcatgtttgatataaggcaatttaaaacagaact 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25131334 aaccttcaattttgattcaaaagttaccaaacggctctttttctttcttgtttttactttctaaaatcatgtttgatataaggcaatataaaacagaact 25131433  T
Q  232 ataagaatgaaatctgaagcttgggctgataaactatcacccacaataattcacaaattttctgaattgggcagcgaacttctagatcatatttgaaaat 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  25131434 ataagaatgaaatctgaagcttgggctgataaactatcacccacaataattcacaaattttctgaattgggtagcgaacttctagatcatatttgaaaat 25131533  T
Q  332 aacaaaatcgagaactgcacaatccacaactgaattaaaacacgaatctggtagaataataatgatgcctttcaatttctttatgtctta----ttattt 427  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||    ||||||    
T  25131534 aacaaaatcgagaactgcacaatccacaactgaattaaaacacgaatctggtagaataata-----------caatttctttatgtcttacctattattt 25131622  T
Q  428 aataagtttcttcaatcagactaannnnnnnnaagaggatgagatttgtgtgactaagtataatgtttactgatagaattaagaactctctttgatcttc 527  Q
    |||||||||||||||||| |||||        |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25131623 aataagtttcttcaatcaaactaattttttt-aagaggatgagatttgcgtgactaagtataatgtttactgatagaattaagaactctctttgatcttc 25131721  T
Q  528 tttggagtggaatatgttctttcgtaaatgctttttctatagcatgttaatcctacggtaggtttcatgattttaaaatttctttagatattgcttgcta 627  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  25131722 tttggagtggaatatgttctttcgtaaatgctttttctatagcatgttaatcctatggtaggtttcatgattttaaaatttctttagatattgtttgcta 25131821  T
Q  628 aaatattacgtcctgcagaaaatatttcatttaaagtttctttttcacttccattcctctttgtttggcttcagtggctgtataaactgacaggtatttt 727  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25131822 aaatattacgtcctgcagaaaatatttcatttgaagtttctttttcacttccattcctctttgtttggcttcagtggctgtataaactgacaggtctttt 25131921  T
Q  728 ggaactttattggcttcacttccattccccttcccttctgttttgcttcacttcttgttagggcatatccctttgttacaaccctgctgtgtctcttatg 827  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25131922 ggaactttattggcttcacttccattccccttcccttctgttttgcttcacttcttgttagggcatatccctttgttacaaccctgctgtgtctcttatg 25132021  T
Q  828 gaaatttctcttcttttc 845  Q
    ||||||||||||||||||    
T  25132022 gaaatttctcttcttttc 25132039  T

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