View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0636_low_21 (Length: 251)

Name: NF0636_low_21
Description: NF0636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0636_low_21
NF0636_low_21
[»] chr4 (27 HSPs)
chr4 (69-235)||(1913727-1913893)
chr4 (70-246)||(1873977-1874151)
chr4 (70-228)||(18890002-18890158)
chr4 (69-235)||(30679788-30679952)
chr4 (70-231)||(25687558-25687717)
chr4 (70-235)||(30673695-30673858)
chr4 (70-235)||(12659185-12659350)
chr4 (70-235)||(16325712-16325877)
chr4 (72-231)||(25697326-25697483)
chr4 (70-238)||(910840-911005)
chr4 (70-231)||(16334760-16334921)
chr4 (70-234)||(23187963-23188125)
chr4 (69-194)||(42404642-42404766)
chr4 (70-194)||(12435382-12435505)
chr4 (70-194)||(42411107-42411230)
chr4 (70-235)||(23200526-23200689)
chr4 (70-194)||(29333637-29333760)
chr4 (72-190)||(12439331-12439449)
chr4 (70-194)||(917324-917447)
chr4 (70-190)||(12428922-12429042)
chr4 (70-192)||(4393790-4393912)
chr4 (69-199)||(33360212-33360342)
chr4 (69-194)||(55325478-55325606)
chr4 (70-192)||(48305378-48305499)
chr4 (74-235)||(12665703-12665859)
chr4 (70-137)||(42119828-42119895)
chr4 (69-101)||(29330090-29330122)
[»] scaffold0014 (2 HSPs)
scaffold0014 (70-235)||(111875-112040)
scaffold0014 (70-130)||(106062-106122)
[»] chr5 (10 HSPs)
chr5 (70-235)||(35264536-35264699)
chr5 (70-235)||(35270277-35270440)
chr5 (70-235)||(23058950-23059113)
chr5 (70-235)||(23053375-23053538)
chr5 (70-220)||(21171198-21171346)
chr5 (70-235)||(39653923-39654086)
chr5 (70-228)||(25365395-25365553)
chr5 (70-220)||(21178059-21178209)
chr5 (70-220)||(16675564-16675709)
chr5 (157-189)||(2135850-2135882)
[»] chr3 (12 HSPs)
chr3 (70-235)||(49486718-49486883)
chr3 (69-235)||(49491215-49491381)
chr3 (69-235)||(21473103-21473269)
chr3 (70-235)||(21453160-21453325)
chr3 (70-235)||(21458334-21458499)
chr3 (70-229)||(2982181-2982338)
chr3 (70-228)||(2978238-2978394)
chr3 (69-235)||(21877163-21877329)
chr3 (70-235)||(15752493-15752658)
chr3 (70-235)||(15758286-15758451)
chr3 (70-235)||(21883424-21883589)
chr3 (70-235)||(21477492-21477656)
[»] chr8 (12 HSPs)
chr8 (70-235)||(30714211-30714374)
chr8 (70-235)||(30721988-30722151)
chr8 (69-235)||(30727596-30727760)
chr8 (70-222)||(37204235-37204384)
chr8 (70-222)||(37209712-37209861)
chr8 (69-194)||(27683442-27683566)
chr8 (70-194)||(21241172-21241295)
chr8 (70-194)||(21247676-21247799)
chr8 (70-194)||(27679660-27679783)
chr8 (79-198)||(24042885-24043004)
chr8 (70-176)||(26196896-26197002)
chr8 (69-139)||(26197020-26197090)
[»] chr1 (17 HSPs)
chr1 (70-235)||(31092943-31093106)
chr1 (70-235)||(31099549-31099712)
chr1 (69-231)||(18540705-18540865)
chr1 (69-220)||(27347176-27347327)
chr1 (70-235)||(11660177-11660340)
chr1 (70-227)||(18534983-18535138)
chr1 (69-235)||(11654019-11654183)
chr1 (69-235)||(35625246-35625412)
chr1 (70-235)||(37365145-37365310)
chr1 (69-222)||(7876090-7876241)
chr1 (70-235)||(37356727-37356892)
chr1 (70-194)||(28519275-28519398)
chr1 (70-194)||(38984912-38985035)
chr1 (70-194)||(38991099-38991222)
chr1 (69-235)||(38736038-38736204)
chr1 (70-194)||(28512812-28512933)
chr1 (69-235)||(39492739-39492903)
[»] chr2 (12 HSPs)
chr2 (70-235)||(25445055-25445218)
chr2 (70-235)||(19437533-19437696)
chr2 (69-233)||(25454715-25454877)
chr2 (70-235)||(19443108-19443271)
chr2 (70-235)||(43293132-43293297)
chr2 (70-235)||(43287387-43287552)
chr2 (70-246)||(24053272-24053447)
chr2 (70-246)||(24056607-24056782)
chr2 (70-192)||(31437151-31437273)
chr2 (70-192)||(31433045-31433167)
chr2 (69-192)||(8872238-8872362)
chr2 (69-139)||(22424976-22425046)
[»] chr6 (4 HSPs)
chr6 (69-231)||(18738572-18738732)
chr6 (69-228)||(33660894-33661053)
chr6 (70-194)||(23427482-23427605)
chr6 (69-194)||(23421635-23421759)
[»] scaffold0102 (1 HSPs)
scaffold0102 (70-235)||(14025-14188)
[»] chr7 (11 HSPs)
chr7 (69-233)||(29176543-29176705)
chr7 (70-194)||(8242541-8242665)
chr7 (70-194)||(8248110-8248234)
chr7 (69-235)||(346521-346687)
chr7 (70-235)||(340287-340452)
chr7 (70-222)||(22822537-22822686)
chr7 (70-222)||(22826840-22826989)
chr7 (79-233)||(29185532-29185684)
chr7 (70-194)||(25830424-25830547)
chr7 (70-170)||(2068782-2068882)
chr7 (72-188)||(21989710-21989826)
[»] scaffold0591 (1 HSPs)
scaffold0591 (70-235)||(9323-9487)
[»] scaffold0079 (1 HSPs)
scaffold0079 (70-231)||(57939-58100)
[»] scaffold0258 (1 HSPs)
scaffold0258 (72-235)||(6274-6435)


Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 69 - 235
Target Start/End: Complemental strand, 1913893 - 1913727
Alignment:
Q  69 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttcccta 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||    
T  1913893 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattaggttattgggcttaattcataggctactctatttcccta 1913794  T
Q  169 taaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    |||||||||||||||||||||||||| ||| |||||||||| |||||||||| ||||| ||||||||    
T  1913793 taaatagagctcatttgtaacattgagatacacacatcagtgaataagaatactgctcatattctct 1913727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 70 - 246
Target Start/End: Complemental strand, 1874151 - 1873977
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||||||    
T  1874151 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattatgttattgggcttaattcataggctactctatttccctat 1874052  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctcttctctgctcct 246  Q
    ||||| ||||||||||||||||||  | |||||||||||| |||||||||| |  ||||||||||| |||| |||||    
T  1874051 aaatatagctcatttgtaacattg--agatacacatcagtgaataagaatacttttcctattctctcctcttctcct 1873977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 70 - 228
Target Start/End: Original strand, 18890002 - 18890158
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| || ||||||||||||||||||    
T  18890002 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattaggttattgggcttaattcataagctactctatttccctat 18890101  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcct 228  Q
    ||||||| ||||||||||||||||  |||||||||| ||| |||||||||||| |||||    
T  18890102 aaatagaactcatttgtaacattg--atatacacattagtgaataagaatatttctcct 18890158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 69 - 235
Target Start/End: Complemental strand, 30679952 - 30679788
Alignment:
Q  69 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttcccta 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||| ||| || |||||||||||||||||    
T  30679952 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttagttcataagctactctatttcccta 30679853  T
Q  169 taaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    |||||||||||||||||||||||||  ||| | |||| ||| |||||||||| ||||| ||||||||    
T  30679852 taaatagagctcatttgtaacattg--ataaatacattagtgaataagaatactgctcttattctct 30679788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 70 - 231
Target Start/End: Complemental strand, 25687717 - 25687558
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||| ||||||| || ||||||||||||||||||    
T  25687717 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactagtttattgggcttaattcataagctactctatttccctat 25687618  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctatt 231  Q
    ||| ||||||||||||||||||||  ||||| | |||||| |||||||||| ||||||||||    
T  25687617 aaacagagctcatttgtaacattg--atatatagatcagtgaataagaatactgctcctatt 25687558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 30673858 - 30673695
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||| ||| || ||||||||||||||||||    
T  30673858 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttagttcataagctactctatttccctat 30673759  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    |||||||| |||||||||||||||  ||| | |||| ||| |||||||||| ||||| ||||||||    
T  30673758 aaatagagttcatttgtaacattg--ataaatacattagtgaataagaatactgctcttattctct 30673695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 12659350 - 12659185
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||| ||| ||| || |||||||||||| | |||    
T  12659350 tgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactctattttcttat 12659251  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    ||||||||||||||||||||| ||| ||| |||||| ||| |||||||||| ||||| ||||||||    
T  12659250 aaatagagctcatttgtaacactgagatacacacattagtgaataagaatactgctcatattctct 12659185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 16325877 - 16325712
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||| ||| ||| || |||||| ||||| | |||    
T  16325877 tgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactatattttcttat 16325778  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    ||||||||||||||||||||||||| ||| |||||| | | ||||||||||||| |||||||||||    
T  16325777 aaatagagctcatttgtaacattgagatacacacattattgaataagaatattgttcctattctct 16325712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 72 - 231
Target Start/End: Complemental strand, 25697483 - 25697326
Alignment:
Q  72 ttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctataa 171  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||| |||||||  ||||||| || ||||||||||||||||||||    
T  25697483 ttataaatattaatagtggatatccaaatagcaaatgtgttagtgggccatactactagtttattggacttaattcataagctactctatttccctataa 25697384  T
Q  172 atagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctatt 231  Q
    ||||||||||||||||||||||  ||||| | |||||| |||||||||| ||||||||||    
T  25697383 atagagctcatttgtaacattg--atatatagatcagtgaataagaatactgctcctatt 25697326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 70 - 238
Target Start/End: Complemental strand, 911005 - 910840
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||| ||||| ||| ||| || |||||||||||| |||||    
T  911005 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcataagctactctattttcctat 910907  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctcttct 238  Q
    ||||||||||||||||||||||||  ||| ||| |||||| |||||||||| |||||||||| ||||||    
T  910906 aaatagagctcatttgtaacattg--atacacagatcagtgaataagaatactgctcctattttcttct 910840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 70 - 231
Target Start/End: Complemental strand, 16334921 - 16334760
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||| ||| ||| || |||||| ||||| | |||    
T  16334921 tgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactatattttcttat 16334822  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctatt 231  Q
    ||||||||||||||||||||||||| ||| |||||| | | ||||||||||||| |||||||    
T  16334821 aaatagagctcatttgtaacattgagatacacacattattgaataagaatattgttcctatt 16334760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 70 - 234
Target Start/End: Original strand, 23187963 - 23188125
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||| |||||| | ||| ||| || ||||||||||||||||||    
T  23187963 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtggaccatactactagtttattgagcttagttcataagctactctatttccctat 23188062  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctc 234  Q
    ||||||||||||||||||||||||  ||| ||| || ||| |||||||||| || ||||||||||    
T  23188063 aaatagagctcatttgtaacattg--atagacagataagtgaataagaatactgttcctattctc 23188125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 69 - 194
Target Start/End: Original strand, 42404642 - 42404766
Alignment:
Q  69 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttcccta 168  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||| ||||| ||| ||| || |||||||||||||||||    
T  42404642 ttgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcataagctactctatttcccta 42404740  T
Q  169 taaatagagctcatttgtaacattga 194  Q
    ||||||||||||||||||||||||||    
T  42404741 taaatagagctcatttgtaacattga 42404766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 70 - 194
Target Start/End: Complemental strand, 12435505 - 12435382
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||| ||||| ||| ||| || ||||||||||||||||||    
T  12435505 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcataagctactctatttccctat 12435407  T
Q  170 aaatagagctcatttgtaacattga 194  Q
    |||||||||||||||||||||||||    
T  12435406 aaatagagctcatttgtaacattga 12435382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 70 - 194
Target Start/End: Original strand, 42411107 - 42411230
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||| ||||| ||| ||| || ||||||||||||||||||    
T  42411107 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcataagctactctatttccctat 42411205  T
Q  170 aaatagagctcatttgtaacattga 194  Q
    |||||||||||||||||||||||||    
T  42411206 aaatagagctcatttgtaacattga 42411230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 70 - 235
Target Start/End: Original strand, 23200526 - 23200689
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||| ||| ||| || | ||||||| ||||||||    
T  23200526 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactagtttattgggcttagttcataagttactctacttccctat 23200625  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    ||||||| ||||||||||||||||  ||| ||| |||||  |||| ||||| || |||||||||||    
T  23200626 aaatagaactcatttgtaacattg--atagacagatcagcgaatacgaatactgttcctattctct 23200689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 70 - 194
Target Start/End: Original strand, 29333637 - 29333760
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||| ||||| ||| ||| ||  |||||||||||||||||    
T  29333637 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcataacctactctatttccctat 29333735  T
Q  170 aaatagagctcatttgtaacattga 194  Q
    ||||| |||||||||||||||||||    
T  29333736 aaataaagctcatttgtaacattga 29333760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 72 - 190
Target Start/End: Complemental strand, 12439449 - 12439331
Alignment:
Q  72 ttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctataa 171  Q
    ||||||||||||||||||||||||||||||||||||  |||  ||||||||| || |||||||||||| ||| ||| || ||||||||||||||||||||    
T  12439449 ttataaatattaatagtggatgtccaaatagcaaataggtttatgggccatactaataggttattgggcttagttcataagctactctatttccctataa 12439350  T
Q  172 atagagctcatttgtaaca 190  Q
    ||||| |||||||||||||    
T  12439349 atagaactcatttgtaaca 12439331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 70 - 194
Target Start/End: Complemental strand, 917447 - 917324
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    ||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||| || |||||| | ||| ||| ||| || ||||||||||||||||||    
T  917447 tgttataaatattaatattggatgtctaaatagcaaatatgttagtgggctatactactaggtt-tcgggcttagttcataagctactctatttccctat 917349  T
Q  170 aaatagagctcatttgtaacattga 194  Q
    |||||||||||||||||||||||||    
T  917348 aaatagagctcatttgtaacattga 917324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 70 - 190
Target Start/End: Complemental strand, 12429042 - 12428922
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||||||| |||||||  |||  ||||||||| || |||||||||||| ||| ||| || ||||||||||||||||||    
T  12429042 tgttataaatattaatagtggatgtccaaagagcaaataggtttatgggccatactaataggttattgggcttagttcataagctactctatttccctat 12428943  T
Q  170 aaatagagctcatttgtaaca 190  Q
    ||||||| |||||||||||||    
T  12428942 aaatagaactcatttgtaaca 12428922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 70 - 192
Target Start/End: Complemental strand, 4393912 - 4393790
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||| ||||| |||||| ||||  | | |||| || ||| ||||| |||||||||| || |||||| |||||||||||    
T  4393912 tgttataaatattaatagtggatgtctaaataacaaatgggttaacgagtcatactactagattattaggtttaattcataagctactttatttccctat 4393813  T
Q  170 aaatagagctcatttgtaacatt 192  Q
    ||||| |||||||||||||||||    
T  4393812 aaataaagctcatttgtaacatt 4393790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 69 - 199
Target Start/End: Complemental strand, 33360342 - 33360212
Alignment:
Q  69 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttcccta 168  Q
    |||||||||||||||| |||| |||| |||||||||||||||||||| | | ||| ||||| ||||||| ||||| ||  || |||||||||||| | ||    
T  33360342 ttgttataaatattaagagtgaatgtacaaatagcaaatgtgttagttgactatactattaagttattgagtttagtttataagctactctattttctta 33360243  T
Q  169 taaatagagctcatttgtaacattgaaatat 199  Q
    ||||||||||||||| |||||||||| ||||    
T  33360242 taaatagagctcattcgtaacattgagatat 33360212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 69 - 194
Target Start/End: Original strand, 55325478 - 55325606
Alignment:
Q  69 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggcc---atattattaggttattgggtttaattcgtaggctactctatttcc 165  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||| |   ||| |||||||||||||   ||| ||| ||  ||||| |||||||    
T  55325478 ttgttataaatattaataatagatgtccaaatagcaaatgtgttagtgggtcataatactattaggttattgaacttagttcataaactactttatttcc 55325577  T
Q  166 ctataaatagagctcatttgtaacattga 194  Q
    ||||||||| ||||||||||| |||||||    
T  55325578 ctataaataaagctcatttgttacattga 55325606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 70 - 192
Target Start/End: Complemental strand, 48305499 - 48305378
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    ||||||||||||||| ||||||||||||||||||||| | |||| |||||||||  | ||| |||||| | ||| ||  || ||||||||||||||||||    
T  48305499 tgttataaatattaaaagtggatgtccaaatagcaaacgcgttaatgggccataccactagattattgagcttagtttatatgctactctatttccctat 48305400  T
Q  170 aaatagagctcatttgtaacatt 192  Q
    |||||||| ||| ||||||||||    
T  48305399 aaatagagttca-ttgtaacatt 48305378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 74 - 235
Target Start/End: Complemental strand, 12665859 - 12665703
Alignment:
Q  74 ataaatattaatagtggatgt---ccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctata 170  Q
    |||||||||||||||||||||   |||||||  |||||||||| ||||||||| || ||||||||||| || | ||| || |||||||||||| | ||||    
T  12665859 ataaatattaatagtggatgttgtccaaataataaatgtgttattgggccatactactaggttattggctt-agttcataagctactctattttcttata 12665761  T
Q  171 aatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    ||||||||||||||||       | ||| |||||| ||| |||||||||| ||||||||||||||    
T  12665760 aatagagctcatttgt-------agatacacacattagtgaataagaatactgctcctattctct 12665703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 70 - 137
Target Start/End: Complemental strand, 42119895 - 42119828
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattg 137  Q
    |||||||||||||||||||||||||||||||||||||||  ||| |||| |||| || ||| ||||||    
T  42119895 tgttataaatattaatagtggatgtccaaatagcaaatggattaatgggtcatactactagattattg 42119828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 101
Target Start/End: Original strand, 29330090 - 29330122
Alignment:
Q  69 ttgttataaatattaatagtggatgtccaaata 101  Q
    |||||||||||||||||| ||||||||||||||    
T  29330090 ttgttataaatattaatattggatgtccaaata 29330122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 70 - 235
Target Start/End: Original strand, 111875 - 112040
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||    
T  111875 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattaggttattgggcttaattcataggctactctatttccctat 111974  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    |||||||| |||||||||||||||| ||| |||||||||| |||||||||| ||||||||||||||    
T  111975 aaatagagttcatttgtaacattgagatacacacatcagtgaataagaatactgctcctattctct 112040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 106062 - 106122
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattag 130  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||| ||| ||||||    
T  106062 tgttataaatattaacagcggatgtccaaatagcaaatgtgttagtgggctatactattag 106122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 131; Significance: 5e-68; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 35264699 - 35264536
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||    
T  35264699 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattaggttattgggcttaattcataggctactctatttccctat 35264600  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    ||||||||||||||||||||||||  | |||||||||||| |||||||||| ||||||||||||||    
T  35264599 aaatagagctcatttgtaacattg--agatacacatcagtgaataagaatactgctcctattctct 35264536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 35270440 - 35270277
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||    
T  35270440 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattaggttattgggcttaattcataggctactctatttccctat 35270341  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    ||||||||||||||||||||||||  | |||||||||||| |||||||||| ||||||||||||||    
T  35270340 aaatagagctcatttgtaacattg--agatacacatcagtgaataagaatactgctcctattctct 35270277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 23059113 - 23058950
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||| || ||||||||||||||||||    
T  23059113 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttaattcataagctactctatttccctat 23059014  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    ||||||||||||||||||||||||  | | |||||| ||| |||||||||| ||||| ||||||||    
T  23059013 aaatagagctcatttgtaacattg--agacacacattagtgaataagaatactgctcttattctct 23058950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 23053538 - 23053375
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| | ||||||| || ||||||||||||||||||    
T  23053538 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgagcttaattcataagctactctatttccctat 23053439  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    ||||||||||||||||||||||||  | | |||||| ||| |||||||||| ||||| ||||||||    
T  23053438 aaatagagctcatttgtaacattg--agacacacattagtgaataagaatactgctcttattctct 23053375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 70 - 220
Target Start/End: Complemental strand, 21171346 - 21171198
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||| ||||||| || ||||||||||||||||||    
T  21171346 tgttataaatattaatagtggatgtccaaatggcaaatgtgttagtgggccatactactaggttattgggcttaattcataagctactctatttccctat 21171247  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaata 220  Q
    ||||||||||||||||||||||||  | |||||||| ||| ||||||||||    
T  21171246 aaatagagctcatttgtaacattg--agatacacataagtgaataagaata 21171198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 39654086 - 39653923
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| ||||| || |||||||||||| ||||||| || |||||| ||||||| |||    
T  39654086 tgttataaatattaatagtggatgtccaaataacaaatgtgttagtggaccatactactaggttattgggcttaattcataagctactatatttccttat 39653987  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    ||||||||||||||| ||||||||  |||||||||||||| |||||||||| ||||| ||||||||    
T  39653986 aaatagagctcatttataacattg--atatacacatcagtgaataagaatactgctcttattctct 39653923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 70 - 228
Target Start/End: Complemental strand, 25365553 - 25365395
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| || |||||||||||| ||| ||| || |||||||||||| |||||    
T  25365553 tgttataaatattaatagtggatgttcaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactctattttcctat 25365454  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcct 228  Q
    |||||||||||||||||||||||| || | |||||| ||| |||||||||||| |||||    
T  25365453 aaatagagctcatttgtaacattgtaaaacacacattagtgaataagaatatttctcct 25365395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 70 - 220
Target Start/End: Complemental strand, 21178209 - 21178059
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactc--tatttccct 167  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||| || |||||||||||| ||||||| || |||||||  ||||| |||    
T  21178209 tgttataaatattaatagtggatgttcaaatggcaaatgtgttagtgggccatactactaggttattgggcttaattcataagctactctatattttcct 21178110  T
Q  168 ataaatagagctcatttgtaacattgaaatatacacatcagtaaataagaata 220  Q
    ||||||||||||||||||||||||||  | |||||||| ||| ||||||||||    
T  21178109 ataaatagagctcatttgtaacattg--agatacacataagtgaataagaata 21178059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 70 - 220
Target Start/End: Original strand, 16675564 - 16675709
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||   ||||| ||||||| || |||||| |||||||||||    
T  16675564 tgttataaatattaatagtgaatgtccaaatagcaaatgtgttagtgggccatactactagg---ttgggcttaattcataagctactatatttccctat 16675660  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaata 220  Q
    ||||||||||||||||||||||||  | |||||||| ||| ||||||||||    
T  16675661 aaatagagctcatttgtaacattg--agatacacataagtgaataagaata 16675709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 189
Target Start/End: Complemental strand, 2135882 - 2135850
Alignment:
Q  157 tctatttccctataaatagagctcatttgtaac 189  Q
    ||||||||| |||||||||||||||||||||||    
T  2135882 tctatttccatataaatagagctcatttgtaac 2135850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 49486883 - 49486718
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||| |||||||||||||||| ||||    
T  49486883 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattaggttattgagcttaattcataggctactctatttctctat 49486784  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    ||||||||||||||||||||||||| ||| |||||||||| |||||||||| ||||||||||||||    
T  49486783 aaatagagctcatttgtaacattgagatacacacatcagtgaataagaatactgctcctattctct 49486718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 69 - 235
Target Start/End: Complemental strand, 49491381 - 49491215
Alignment:
Q  69 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttcccta 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||| |||||||||||||||| |||    
T  49491381 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattaggttattgagcttaattcataggctactctatttctcta 49491282  T
Q  169 taaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    |||||||||||||||||||||||||| ||| |||||||||| |||||||||| ||||| ||||||||    
T  49491281 taaatagagctcatttgtaacattgagatacacacatcagtgaataagaatactgctcatattctct 49491215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 69 - 235
Target Start/End: Original strand, 21473103 - 21473269
Alignment:
Q  69 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttcccta 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||  ||| ||| || |||||||||||| | ||    
T  21473103 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactattagcttattggacttagttcataagctactctattttctta 21473202  T
Q  169 taaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    |||||||||||||||||||||||||| ||| |||||||||| |||||||||| ||||||||||||||    
T  21473203 taaatagagctcatttgtaacattgagatacacacatcagtgaataagaatactgctcctattctct 21473269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 70 - 235
Target Start/End: Original strand, 21453160 - 21453325
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||| ||| ||| || |||||||||||| | |||    
T  21453160 tgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactctattttcttat 21453259  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    ||||||||||||||||||||||||  ||| |||||||||| |||||||||| ||||||||||||||    
T  21453260 aaatagagctcatttgtaacattgggatacacacatcagtgaataagaatactgctcctattctct 21453325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 70 - 235
Target Start/End: Original strand, 21458334 - 21458499
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||| ||| ||| || |||||||||||| | |||    
T  21458334 tgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactctattttcttat 21458433  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    ||||||||||||||||||||||||  ||| |||||||||| |||||||||| ||||||||||||||    
T  21458434 aaatagagctcatttgtaacattgggatacacacatcagtgaataagaatactgctcctattctct 21458499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 70 - 229
Target Start/End: Complemental strand, 2982338 - 2982181
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||| ||| ||| || ||||||||||||||||||    
T  2982338 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggctatactactaggttattgggcttagttcataagctactctatttccctat 2982239  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctccta 229  Q
    ||||||||||||||||||||||||  |||||||||| ||| |||||||||||| ||||||    
T  2982238 aaatagagctcatttgtaacattg--atatacacataagtgaataagaatatttctccta 2982181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 70 - 228
Target Start/End: Complemental strand, 2978394 - 2978238
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||| ||| ||| || |||||||||||| |||||    
T  2978394 tgttataaatattaatagtggatgtccaaataacaaatgtgttagtgggccatactactaggttattgggcttagttcataagctactctattttcctat 2978295  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcct 228  Q
    ||||||||||||||||||||||||  |||||||||||||| |||||||||||| |||||    
T  2978294 aaatagagctcatttgtaacattg--atatacacatcagtgaataagaatatttctcct 2978238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 69 - 235
Target Start/End: Original strand, 21877163 - 21877329
Alignment:
Q  69 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttcccta 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||| ||| ||| || |||||||||||| | ||    
T  21877163 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactctattttctta 21877262  T
Q  169 taaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    ||||| |||||||||||||||||||  ||| |||||||||| |||| ||||||| ||||||||||||    
T  21877263 taaatggagctcatttgtaacattgggatacacacatcagtgaataggaatatttctcctattctct 21877329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 15752658 - 15752493
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||| ||| ||| || |||||||||||| | |||    
T  15752658 tgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactctattttcttat 15752559  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    ||||||||||||||||||||||||| ||| |||||| ||| |||||||||| |||||  |||||||    
T  15752558 aaatagagctcatttgtaacattgagatacacacattagtgaataagaatactgctctaattctct 15752493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 15758451 - 15758286
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||| ||| ||| || |||||||||||| | |||    
T  15758451 tgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactctattttcttat 15758352  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    ||||||||||||||||||||||||| ||| |||||| ||| |||||||||| |||||  |||||||    
T  15758351 aaatagagctcatttgtaacattgagatacacacattagtgaataagaatactgctctaattctct 15758286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 70 - 235
Target Start/End: Original strand, 21883424 - 21883589
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||| ||||||||||||||||||||||||| || |||||| || |||||||||||| ||| ||| || |||||||||||| | |||    
T  21883424 tgttataaatattaatagcggatgtccaaatagcaaatgtgttattgagccatactactaggttattgggcttagttcataagctactctattttcttat 21883523  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    ||||||||||||||||||||||||  ||| |||||||||| |||| ||||||| ||||||||||||    
T  21883524 aaatagagctcatttgtaacattgggatacacacatcagtgaataggaatatttctcctattctct 21883589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 70 - 235
Target Start/End: Original strand, 21477492 - 21477656
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||| || |||||||||||| ||| ||| || |||||| |||||   |||    
T  21477492 tgttataaatattaatagtggatgtccaaatagcaa-tgtgttattgggccatactactaggttattgggcttagttcataagctactttatttttttat 21477590  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    |||||| |||||||||||||||||| ||| ||||||| ||||||||||||| ||||||||||||||    
T  21477591 aaatagggctcatttgtaacattgagatacacacatcggtaaataagaatactgctcctattctct 21477656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 30714374 - 30714211
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||| ||||||| || ||||||||||||||||||    
T  30714374 tgttataaatattaatagtggatgtccaaatagcaattgtgttagtgggccatactactaggttattgggcttaattcataagctactctatttccctat 30714275  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    ||||||||||||||||||||||||  |||||||||||||| |||||||||| ||||||||||||||    
T  30714274 aaatagagctcatttgtaacattg--atatacacatcagtgaataagaatactgctcctattctct 30714211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 30722151 - 30721988
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||| ||||||| || ||||||||||||||||||    
T  30722151 tgttataaatattaatagtggatgtccaaatagcaattgtgttagtgggccatactactaggttattgggcttaattcataagctactctatttccctat 30722052  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    ||||||||||||||||||||||||  |||||||||||||| |||||||||| ||||||||||||||    
T  30722051 aaatagagctcatttgtaacattg--atatacacatcagtgaataagaatactgctcctattctct 30721988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 69 - 235
Target Start/End: Complemental strand, 30727760 - 30727596
Alignment:
Q  69 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttcccta 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||| || |||||| ||||| ||||    
T  30727760 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttaattcataagctactatattttccta 30727661  T
Q  169 taaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
     ||||||||||||||||||||||||  |||||||||||||| |||||||||| ||||||||||||||    
T  30727660 aaaatagagctcatttgtaacattg--atatacacatcagtgaataagaatactgctcctattctct 30727596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 70 - 222
Target Start/End: Original strand, 37204235 - 37204384
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||| ||||| ||| ||| |  ||||||||||||||||||    
T  37204235 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 37204333  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatatt 222  Q
    ||||||||||||||||||||||||  ||| |||||||||| ||||||||||||    
T  37204334 aaatagagctcatttgtaacattg--atacacacatcagtgaataagaatatt 37204384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 70 - 222
Target Start/End: Original strand, 37209712 - 37209861
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||| ||||| ||| ||| |  ||||||||||||||||||    
T  37209712 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 37209810  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatatt 222  Q
    ||||||||||||||||||||||||  ||| |||||||||| ||||||||||||    
T  37209811 aaatagagctcatttgtaacattg--atacacacatcagtgaataagaatatt 37209861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 69 - 194
Target Start/End: Complemental strand, 27683566 - 27683442
Alignment:
Q  69 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttcccta 168  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||| ||||||||| ||| || | |||||||||||||||    
T  27683566 ttgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggtttagttcataagttactctatttcccta 27683468  T
Q  169 taaatagagctcatttgtaacattga 194  Q
    ||||||||||||||||||||||||||    
T  27683467 taaatagagctcatttgtaacattga 27683442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 70 - 194
Target Start/End: Original strand, 21241172 - 21241295
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||| || |||||| ||||| ||| ||| || ||||||||||||||||||    
T  21241172 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtggaccatactactaggtt-ttgggcttagttcataagctactctatttccctat 21241270  T
Q  170 aaatagagctcatttgtaacattga 194  Q
    |||||||||||||||||||||||||    
T  21241271 aaatagagctcatttgtaacattga 21241295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 70 - 194
Target Start/End: Original strand, 21247676 - 21247799
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||| || |||||| ||||| ||| ||| || ||||||||||||||||||    
T  21247676 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtggaccatactactaggtt-ttgggcttagttcataagctactctatttccctat 21247774  T
Q  170 aaatagagctcatttgtaacattga 194  Q
    |||||||||||||||||||||||||    
T  21247775 aaatagagctcatttgtaacattga 21247799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 70 - 194
Target Start/End: Complemental strand, 27679783 - 27679660
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||| ||||| ||| ||| || ||||||||||||||||||    
T  27679783 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcataagctactctatttccctat 27679685  T
Q  170 aaatagagctcatttgtaacattga 194  Q
    |||||||||| ||||||||||||||    
T  27679684 aaatagagctaatttgtaacattga 27679660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 79 - 198
Target Start/End: Complemental strand, 24043004 - 24042885
Alignment:
Q  79 tattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctataaatagagc 178  Q
    ||||||| |||| |||||||||| ||||||||||| ||||||||| |||||| |||||||| ||| ||| || ||||||||||||| |||||||||||||    
T  24043004 tattaattgtgggtgtccaaataacaaatgtgttaatgggccataatattagattattgggcttagttcataagctactctatttctctataaatagagc 24042905  T
Q  179 tcatttgtaacattgaaata 198  Q
    |||| ||||||||| |||||    
T  24042904 tcatatgtaacattaaaata 24042885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 70 - 176
Target Start/End: Original strand, 26196896 - 26197002
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    ||||||||||||||||||||||||| ||||||||||||  |||  ||||||||| || |||||||||||| ||| ||| || ||||||||||||||||||    
T  26196896 tgttataaatattaatagtggatgttcaaatagcaaataggtttatgggccatactaataggttattgggcttagttcataagctactctatttccctat 26196995  T
Q  170 aaataga 176  Q
    |||||||    
T  26196996 aaataga 26197002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 139
Target Start/End: Complemental strand, 26197090 - 26197020
Alignment:
Q  69 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattggg 139  Q
    |||||||||||||||||||||||||||||||||||||||  |||  | ||||||| || ||||||||||||    
T  26197090 ttgttataaatattaatagtggatgtccaaatagcaaataggtttataggccatactaataggttattggg 26197020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 7e-61; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 31093106 - 31092943
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||| || ||||||||||||||||||    
T  31093106 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttaattcataagctactctatttccctat 31093007  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    ||||||||||||||||||||||||  ||||| |||||||| ||||| |||| ||||||||||||||    
T  31093006 aaatagagctcatttgtaacattg--atatatacatcagtgaataaaaatactgctcctattctct 31092943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 31099712 - 31099549
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||| || ||||||||||||||||||    
T  31099712 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttaattcataagctactctatttccctat 31099613  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    ||||||||||||||||||||||||  ||||| |||||||| ||||| |||| ||||| ||||||||    
T  31099612 aaatagagctcatttgtaacattg--atatatacatcagtgaataaaaatactgctcttattctct 31099549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 69 - 231
Target Start/End: Complemental strand, 18540865 - 18540705
Alignment:
Q  69 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttcccta 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||| ||| || |||||||||||| ||||    
T  18540865 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttagttcataagctactctattttccta 18540766  T
Q  169 taaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctatt 231  Q
    |||||||||||||||||||||||||  ||||||| |||||| |||||||||| ||||||||||    
T  18540765 taaatagagctcatttgtaacattg--atatacagatcagtgaataagaatactgctcctatt 18540705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 69 - 220
Target Start/End: Complemental strand, 27347327 - 27347176
Alignment:
Q  69 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttcccta 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||| || |||||||||||| ||||||| || |||||||||||||||||    
T  27347327 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttattgagccatactactaggttattgggcttaattcataagctactctatttcccta 27347228  T
Q  169 taaatagagctcatttgtaacattgaaatatacacatcagtaaataagaata 220  Q
    |||||||||||||||||||||||||| ||| |||||||||| ||||||||||    
T  27347227 taaatagagctcatttgtaacattgagatacacacatcagtgaataagaata 27347176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 70 - 235
Target Start/End: Original strand, 11660177 - 11660340
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||||| || || ||||||||| ||||||| || ||||||||||||||||||    
T  11660177 tgttataaatattaatagtggatgtccaagtaacaaatgtgttagtgggccatactactatgttattgggcttaattcataagctactctatttccctat 11660276  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    ||||||||||||||||||||||||  |||||||||||||| |||||||||| ||||| ||||||||    
T  11660277 aaatagagctcatttgtaacattg--atatacacatcagtgaataagaatactgctcatattctct 11660340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 70 - 227
Target Start/End: Complemental strand, 18535138 - 18534983
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||| ||| || |||||||||||| |||||    
T  18535138 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttagttcataagctactctattttcctat 18535039  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcc 227  Q
    ||||||||||||||||||||||||  ||||||| |||||| |||||||||| ||||||    
T  18535038 aaatagagctcatttgtaacattg--atatacagatcagtgaataagaatactgctcc 18534983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 69 - 235
Target Start/End: Original strand, 11654019 - 11654183
Alignment:
Q  69 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttcccta 168  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||  |||| || || ||||||||| ||||||| || |||| ||||||||||||    
T  11654019 ttgttataaatattaatagtggatatccaaatagcaaatgtgttagtggatcatactactatgttattgggcttaattcataagctattctatttcccta 11654118  T
Q  169 taaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    ||||||||| |||||||||||||||  |||||||||||| | |||||||||| ||||||||||||||    
T  11654119 taaatagagttcatttgtaacattg--atatacacatcaatgaataagaatactgctcctattctct 11654183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 69 - 235
Target Start/End: Complemental strand, 35625412 - 35625246
Alignment:
Q  69 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttcccta 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||| |||||||| ||| ||| || |||||| ||||| | ||    
T  35625412 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactagattattgggcttagttcataagctactatattttctta 35625313  T
Q  169 taaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    |||||||||||||||||||||||||| ||| |||||| | | |||||||||| ||||||||||||||    
T  35625312 taaatagagctcatttgtaacattgagatacacacattattgaataagaatactgctcctattctct 35625246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 37365310 - 37365145
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||||| || |||||||||||| ||| ||| || |||||| ||||| | |||    
T  37365310 tgttataaatattaatagtggatgtccaaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactatattttcttat 37365211  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    ||||||||||||||||||||||||| ||| |||||| | | |||||||||| || |||||||||||    
T  37365210 aaatagagctcatttgtaacattgagatacacacattattgaataagaatactgttcctattctct 37365145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 69 - 222
Target Start/End: Original strand, 7876090 - 7876241
Alignment:
Q  69 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttcccta 168  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||| || ||||||||| || ||| |||||| |||||| ||||||||||    
T  7876090 ttgttataaatattaatagtgaatgtccaaataacaaatgtgttagtggaccatactactaggttattaggcttagttcgtaagctactatatttcccta 7876189  T
Q  169 taaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatatt 222  Q
    |||||||||||||||||||||||||  | |||||||| ||| ||||||||||||    
T  7876190 taaatagagctcatttgtaacattg--agatacacattagtgaataagaatatt 7876241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 37356892 - 37356727
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||| ||| ||| || |||||| ||||| | |||    
T  37356892 tgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactatattttcttat 37356793  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    ||||||||||||||| ||||||||| ||| |||||| | | ||||||||||  | |||||||||||    
T  37356792 aaatagagctcatttataacattgagatacacacattattgaataagaataccgttcctattctct 37356727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 70 - 194
Target Start/End: Original strand, 28519275 - 28519398
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||| ||||| ||| ||| || ||||||||||||||||||    
T  28519275 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcataagctactctatttccctat 28519373  T
Q  170 aaatagagctcatttgtaacattga 194  Q
    |||||||||||||||||||||||||    
T  28519374 aaatagagctcatttgtaacattga 28519398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 70 - 194
Target Start/End: Original strand, 38984912 - 38985035
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||| ||||| ||| ||| || ||||||||||||||||||    
T  38984912 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcataagctactctatttccctat 38985010  T
Q  170 aaatagagctcatttgtaacattga 194  Q
    |||||||||||||||||||||||||    
T  38985011 aaatagagctcatttgtaacattga 38985035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 70 - 194
Target Start/End: Original strand, 38991099 - 38991222
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||| ||||| ||| ||| || ||||||||||||||||||    
T  38991099 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcataagctactctatttccctat 38991197  T
Q  170 aaatagagctcatttgtaacattga 194  Q
    |||||||||||||||||||||||||    
T  38991198 aaatagagctcatttgtaacattga 38991222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 69 - 235
Target Start/End: Original strand, 38736038 - 38736204
Alignment:
Q  69 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttcccta 168  Q
    |||||||||||||||||||||| ||||||||||| |||| ||||| ||||||||| ||||||||||||||| ||| ||| || |||||||||||| | ||    
T  38736038 ttgttataaatattaatagtggttgtccaaatagaaaatatgttattgggccatactattaggttattgggcttagttcataagctactctattttctta 38736137  T
Q  169 taaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    ||||||||| |||||||||||||| | ||| | |||||||| ||||| |||| ||||| ||||||||    
T  38736138 taaatagagttcatttgtaacattcagatacatacatcagtgaataataatactgctcatattctct 38736204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 70 - 194
Target Start/End: Original strand, 28512812 - 28512933
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    ||||||||||||||||| ||||||||||||  |||||||||||||||||||||| || |||||| ||||| ||| ||| || ||||||||||||||||||    
T  28512812 tgttataaatattaatattggatgtccaaa--gcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcataagctactctatttccctat 28512908  T
Q  170 aaatagagctcatttgtaacattga 194  Q
    |||||||||||||||||||||||||    
T  28512909 aaatagagctcatttgtaacattga 28512933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 69 - 235
Target Start/End: Original strand, 39492739 - 39492903
Alignment:
Q  69 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttcccta 168  Q
    |||||||||||||||||||||||||||||||||||||||  |||  || |||||| || ||| |||||||| ||| |   ||  |||||||||||| |||    
T  39492739 ttgttataaatattaatagtggatgtccaaatagcaaataggtttatgagccatactaatagattattgggcttagtctataaactactctatttctcta 39492838  T
Q  169 taaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    |||||| |  |||||||||| | ||| ||||  | |||||| |||||||||| ||||| ||||||||    
T  39492839 taaataaaattcatttgtaagagtgagatat--atatcagtgaataagaatactgctcatattctct 39492903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 25445218 - 25445055
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||| ||||||| || ||||||||||||||||||    
T  25445218 tgttataaatattaatagtggatgtccaaatagcaaatgtgttaatgggccatactactaggttattgggcttaattcataagctactctatttccctat 25445119  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    ||||||||||||||||||||||||  ||| |||||||||| |||||||||| | ||||||||||||    
T  25445118 aaatagagctcatttgtaacattg--atacacacatcagtgaataagaatactcctcctattctct 25445055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 19437696 - 19437533
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||| || ||||||||||||||||||    
T  19437696 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttaattcataagctactctatttccctat 19437597  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    ||||||||||||||||||||||||  | | |||||| ||| |||||||||| ||||| ||||||||    
T  19437596 aaatagagctcatttgtaacattg--agacacacattagtgaataagaatactgctcttattctct 19437533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 69 - 233
Target Start/End: Complemental strand, 25454877 - 25454715
Alignment:
Q  69 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttcccta 168  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||| | ||||||| || |||||||||||||||||    
T  25454877 ttgttataaatattaatagtgaatgtccaaatagcaaatgtgttagtgggccatactactaggttattgagcttaattcataagctactctatttcccta 25454778  T
Q  169 taaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattct 233  Q
    |||||||||||||||||||||||||  ||| |||||||| | |||||||||| ||||||||||||    
T  25454777 taaatagagctcatttgtaacattg--atacacacatcattgaataagaatactgctcctattct 25454715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 19443271 - 19443108
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||| || |||||||||||| |||||    
T  19443271 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttaattcataagctactctattttcctat 19443172  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    ||||||||||||||||||||||||  | | |||||| ||| |||||||||| ||||| ||||||||    
T  19443171 aaatagagctcatttgtaacattg--agacacacattagtgaataagaatactgctcttattctct 19443108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 43293297 - 43293132
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||| ||| ||| || |||||||||||| | |||    
T  43293297 tgttataaacattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactctattttcttat 43293198  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    ||||||||||||||||||||||||  ||| |||||||||| |||||||||| ||||||||||||||    
T  43293197 aaatagagctcatttgtaacattgggatacacacatcagtgaataagaatactgctcctattctct 43293132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 43287552 - 43287387
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    ||||||||| ||||||||| |||||||||||||||||||||||| ||||||||| || |||||||||||| ||| ||| || |||||||||||| | |||    
T  43287552 tgttataaacattaatagtagatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactctattttcttat 43287453  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    ||||||||||||||||||||||||| ||| |||||| ||| |||||||||| ||||||||||||||    
T  43287452 aaatagagctcatttgtaacattgagatacacacattagtgaataagaatactgctcctattctct 43287387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 70 - 246
Target Start/End: Complemental strand, 24053447 - 24053272
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||| ||| ||| || |||||||||||| | |||    
T  24053447 tgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactctattttcttat 24053348  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctcttctctgctcct 246  Q
    ||||||||||||||||||| ||||| ||| | |||| ||| |||||||||| ||||||||||||||| ||| |||||    
T  24053347 aaatagagctcatttgtaatattgagatacatacattagtgaataagaata-tgctcctattctcttttcttctcct 24053272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 70 - 246
Target Start/End: Complemental strand, 24056782 - 24056607
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| || |||||||||||  ||| ||| || |||||||||||| | |||    
T  24056782 tgttataaatattaatagtggatgtccagatagcaaatgtgttattgg-ccatactactaggttattggacttagttcataagctactctattttcttat 24056684  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctcttctctgctcct 246  Q
    ||||||||||||||||||||||||| ||| |||||| ||| |||||||||| |||| |||||||||| ||| |||||    
T  24056683 aaatagagctcatttgtaacattgagatacacacattagtgaataagaatactgcttctattctcttttcttctcct 24056607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 70 - 192
Target Start/End: Original strand, 31437151 - 31437273
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||||||| | |||||| |||| ||| ||||| || |  ||||||||| ||| ||| || |||||||||||| |||||    
T  31437151 tgttataaatattaatagtggatgtccaaacaacaaatgagttaatggaccataatactgtgttattgggcttagttcataagctactctattttcctat 31437250  T
Q  170 aaatagagctcatttgtaacatt 192  Q
    ||||| || ||||||||||||||    
T  31437251 aaataaagttcatttgtaacatt 31437273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 192
Target Start/End: Original strand, 31433045 - 31433167
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    ||||||||||||||||||||||||||||||||||||||  |||| |||  |||   | ||| |||||| | ||| ||| || | || |||||||||||||    
T  31433045 tgttataaatattaatagtggatgtccaaatagcaaattagttaatggagcatgcaactagtttattgagcttagttcataagatattctatttccctat 31433144  T
Q  170 aaatagagctcatttgtaacatt 192  Q
    |||||  | ||||||||||||||    
T  31433145 aaataatgttcatttgtaacatt 31433167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 192
Target Start/End: Original strand, 8872238 - 8872362
Alignment:
Q  69 ttgttataaatattaatagtgg-atgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccct 167  Q
    ||||||| |||||||  ||||| || |||| ||| |||||| |||| | ||||||| |||| | |||||||| ||| |   ||||||||| |||||||||    
T  8872238 ttgttatgaatattataagtgggatatccatatatcaaatgggttaataggccatactatttgattattgggcttagtctataggctactatatttccct 8872337  T
Q  168 ataaatagagctcatttgtaacatt 192  Q
    |||||||||| ||||||||||||||    
T  8872338 ataaatagagttcatttgtaacatt 8872362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 139
Target Start/End: Original strand, 22424976 - 22425046
Alignment:
Q  69 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattggg 139  Q
    ||||||| |||||||  |||||||||||| |||||||||| |||| |||  |||||| |||| ||||||||    
T  22424976 ttgttatgaatattacaagtggatgtccatatagcaaatgggttattggatcatattgttagcttattggg 22425046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 69 - 231
Target Start/End: Original strand, 18738572 - 18738732
Alignment:
Q  69 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttcccta 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||| ||| || |||||||||||| ||||    
T  18738572 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttagttcataagctactctatttaccta 18738671  T
Q  169 taaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctatt 231  Q
    |||||||||||||||||||||||||  | | |||| |||||||||||||||| ||||||||||    
T  18738672 taaatagagctcatttgtaacattg--agagacacgtcagtaaataagaatactgctcctatt 18738732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 69 - 228
Target Start/End: Complemental strand, 33661053 - 33660894
Alignment:
Q  69 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttcccta 168  Q
    |||||||||||||||||||||||||||||||||||||||  |||  |||||||||||| |||||||||||| ||| ||| || |||||||||||| | ||    
T  33661053 ttgttataaatattaatagtggatgtccaaatagcaaataggtttatgggccatattactaggttattgggcttagttcataagctactctattttctta 33660954  T
Q  169 taaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcct 228  Q
    ||||||||| |||||||||||||||| ||| ||||||| || |||||||||||| |||||    
T  33660953 taaatagagttcatttgtaacattgagatacacacatcggtgaataagaatatttctcct 33660894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 70 - 194
Target Start/End: Original strand, 23427482 - 23427605
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||| ||||| || |||||| ||||| ||| ||| || ||||||||||||||||||    
T  23427482 tgttataaatattaatatttgatgtccaaatagcaaatgtgttagtggaccatactactaggtt-ttgggcttagttcataagctactctatttccctat 23427580  T
Q  170 aaatagagctcatttgtaacattga 194  Q
    |||||||||||||||||||||||||    
T  23427581 aaatagagctcatttgtaacattga 23427605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 69 - 194
Target Start/End: Original strand, 23421635 - 23421759
Alignment:
Q  69 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttcccta 168  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||| | ||| || |||||| ||||| ||| ||| || | |||||||||||||||    
T  23421635 ttgttataaatattaatatttgatgtccaaatagcaaatgtgttagtggactatactactaggtt-ttgggcttagttcataagttactctatttcccta 23421733  T
Q  169 taaatagagctcatttgtaacattga 194  Q
    ||||||||||||||||||||||||||    
T  23421734 taaatagagctcatttgtaacattga 23421759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 70 - 235
Target Start/End: Original strand, 14025 - 14188
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||| | ||| ||| || ||||||||||||||||||    
T  14025 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgagccatactactaggttattgagcttagttcataagctactctatttccctat 14124  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    ||||||||||||||||||||||||  | | |||||||||| |||||||||| ||||||||||||||    
T  14125 aaatagagctcatttgtaacattg--agagacacatcagtgaataagaatactgctcctattctct 14188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 9e-51; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 69 - 233
Target Start/End: Original strand, 29176543 - 29176705
Alignment:
Q  69 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttcccta 168  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| |||| || |||||||||||| ||| ||| || |||||||||||||||||    
T  29176543 ttgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggtcatactactaggttattgggcttagttcataagctactctatttcccta 29176642  T
Q  169 taaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattct 233  Q
    |||||||||||||||||||||||||  ||| |||||| ||| |||||||||| |||| |||||||    
T  29176643 taaatagagctcatttgtaacattg--atacacacattagtgaataagaatactgcttctattct 29176705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 70 - 194
Target Start/End: Original strand, 8242541 - 8242665
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| || ||||||| || ||||||||||||||||||    
T  8242541 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggtcatattactagattattaggcttaattcataagctactctatttccctat 8242640  T
Q  170 aaatagagctcatttgtaacattga 194  Q
    |||||||||||||||||||||||||    
T  8242641 aaatagagctcatttgtaacattga 8242665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 70 - 194
Target Start/End: Original strand, 8248110 - 8248234
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| || ||||||| || |||||||||||| |||||    
T  8248110 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattactagattattaggcttaattcataagctactctattttcctat 8248209  T
Q  170 aaatagagctcatttgtaacattga 194  Q
    |||||||||||||||||||||||||    
T  8248210 aaatagagctcatttgtaacattga 8248234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 69 - 235
Target Start/End: Complemental strand, 346687 - 346521
Alignment:
Q  69 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttcccta 168  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| || |||||| || |||||||||| | ||| ||| || |||||||||||| | ||    
T  346687 ttgttataaatattaatagcggatgtccaaatagcaaatgtgttattgagccatactactaggttattgagcttagttcataagctactctattttctta 346588  T
Q  169 taaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    |||||||||||||||||||||||||  ||| |||||||||| |||| ||||||| ||||||||||||    
T  346587 taaatagagctcatttgtaacattgggatacacacatcagtgaataggaatatttctcctattctct 346521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 340452 - 340287
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| || |||||| || |||||||||||| ||| ||| || |||||||||||| | |||    
T  340452 tgttataaatattaatagcggatgtccaaataacaaatgtgttattgagccatactactaggttattgggcttagttcataagctactctattttcttat 340353  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    ||||||||||||||||||||||||  ||| |||||||||| |||| ||||||| ||||||||||||    
T  340352 aaatagagctcatttgtaacattgggatacacacatcagtgaataggaatatttctcctattctct 340287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 70 - 222
Target Start/End: Original strand, 22822537 - 22822686
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||| ||||| ||| ||| |  ||||||||||||||||||    
T  22822537 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 22822635  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatatt 222  Q
    ||||||||||||||||||||||||  ||| |||||||||| ||||||||||||    
T  22822636 aaatagagctcatttgtaacattg--atacacacatcagtgaataagaatatt 22822686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 70 - 222
Target Start/End: Original strand, 22826840 - 22826989
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||| ||||| ||| ||| |  ||||||||||||||||||    
T  22826840 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 22826938  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatatt 222  Q
    ||||||||||||||||||||||||  ||| |||||||||| ||||||||||||    
T  22826939 aaatagagctcatttgtaacattg--atacacacatcagtgaataagaatatt 22826989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 79 - 233
Target Start/End: Original strand, 29185532 - 29185684
Alignment:
Q  79 tattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctataaatagagc 178  Q
    |||||||| ||||||||||||||| |||||||||||||||||||| || |||||||||||| ||| ||| || |||||||||||||||||||||||||||    
T  29185532 tattaatattggatgtccaaatagaaaatgtgttagtgggccatactactaggttattgggcttagttcataagctactctatttccctataaatagagc 29185631  T
Q  179 tcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattct 233  Q
    |||||||||||||||  ||| |||||| ||| |||||||||| |||| |||||||    
T  29185632 tcatttgtaacattg--atacacacattagtgaataagaatactgcttctattct 29185684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 70 - 194
Target Start/End: Complemental strand, 25830547 - 25830424
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    ||||||||||||||||||||||||||||||||||||||  |||| ||||| ||  || ||| || ||||| ||| | | || |||| | |||||||||||    
T  25830547 tgttataaatattaatagtggatgtccaaatagcaaattggttaatgggctat-ctactagattgttgggcttagtccataagctattatatttccctat 25830449  T
Q  170 aaatagagctcatttgtaacattga 194  Q
    ||||||||||| |||||| ||||||    
T  25830448 aaatagagctcctttgtagcattga 25830424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 170
Target Start/End: Complemental strand, 2068882 - 2068782
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    ||||||||||||||||||||||||||||||||||||||| |||| | ||| ||| || ||| | |||||| ||| | | || |||| | |||||||||||    
T  2068882 tgttataaatattaatagtggatgtccaaatagcaaatgagttaataggctatactaatagatgattgggcttagtccataagctattatatttccctat 2068783  T
Q  170 a 170  Q
    |    
T  2068782 a 2068782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 188
Target Start/End: Complemental strand, 21989826 - 21989710
Alignment:
Q  72 ttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctataa 171  Q
    ||||||||||||  ||| |||||||||||| |||||| | ||  ||| |||| |||||  |||||| ||||| | | || |||||||| ||| ||| |||    
T  21989826 ttataaatattataagtagatgtccaaataacaaatgagctaacgggtcatactattatattattgtgtttagtccataagctactctgttttcctgtaa 21989727  T
Q  172 atagagctcatttgtaa 188  Q
     ||| ||||||||||||    
T  21989726 ctagggctcatttgtaa 21989710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0591 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 70 - 235
Target Start/End: Original strand, 9323 - 9487
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||||| || |||||||||||| ||| ||| || |||||||||||| | |||    
T  9323 tgttataaatattaatagtggatgtccaaatagcaaatgtattattgggccatactactaggttattgggcttagttcataagctactctattttcttat 9422  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    ||||||||||||||||||||||||  ||| |||||||| | |||||||||||| ||||||||||||    
T  9423 aaatagagctcatttgtaacattgggatacacacatca-tgaataagaatatttctcctattctct 9487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 70 - 231
Target Start/End: Original strand, 57939 - 58100
Alignment:
Q  70 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctat 169  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||| ||| ||| || |||||| ||||| | |||    
T  57939 tgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactatattttcttat 58038  T
Q  170 aaatagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctatt 231  Q
    ||||||||||||||||||||||||| ||| |||||| | | ||||||||||||| |||||||    
T  58039 aaatagagctcatttgtaacattgagatacacacattattgaataagaatattgttcctatt 58100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 72 - 235
Target Start/End: Complemental strand, 6435 - 6274
Alignment:
Q  72 ttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattattaggttattgggtttaattcgtaggctactctatttccctataa 171  Q
    ||||||||||||| ||||||||||||||||||||||   ||  ||||| |||  | |||||||||||| ||| ||| || |||||||||||||||| |||    
T  6435 ttataaatattaacagtggatgtccaaatagcaaataaatttatgggctatacgaataggttattgggcttagttcataagctactctatttccctgtaa 6336  T
Q  172 atagagctcatttgtaacattgaaatatacacatcagtaaataagaatattgctcctattctct 235  Q
    ||||| |||| |||||||| |||   ||   ||||||| |||||||||||||||||||||||||    
T  6335 atagaactcaattgtaacagtgagtgat--gcatcagtgaataagaatattgctcctattctct 6274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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