View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0636_low_22 (Length: 251)
Name: NF0636_low_22
Description: NF0636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0636_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 29 - 230
Target Start/End: Complemental strand, 30499280 - 30499073
Alignment:
| Q |
29 |
attatacacattgaaaccaaatcaaat------cacattcacaattcaaccctctaaccaacttgcacatttcatttcatttcaacaaaagccacaccta |
122 |
Q |
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| T |
30499280 |
attatacgcattgaaatcaaatcaaatatcacacacattcacaattcaaccctctaaccaacttgcacatttcatttcatttcaacaaaagccacaccta |
30499181 |
T |
|
| Q |
123 |
catcacaatttattatattcccttttcttcacttcatatattacattacaatttctttttcgnnnnnnncaacaactactctatggaagtaattgaagat |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
30499180 |
catcacaatttattatattcccttttcttcacttcatatattacattacaatttctttttcgaaaaaaacaacaactactctatggaagtaattggagat |
30499081 |
T |
|
| Q |
223 |
attcttcg |
230 |
Q |
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||||||| |
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| T |
30499080 |
tttcttcg |
30499073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 85 - 230
Target Start/End: Original strand, 31214608 - 31214753
Alignment:
| Q |
85 |
ttgcacatttcatttcatttcaacaaaagccacacctacatcacaatttattatattcccttttcttcacttcatatattacattacaatttctttttcg |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
31214608 |
ttgcacatttcatttcatttcaacaaaagccacacctacatcacaatttattatattcccttttcttcacttcacatattacataacaatttctttttcc |
31214707 |
T |
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| Q |
185 |
nnnnnnncaacaactactctatggaagtaattgaagatattcttcg |
230 |
Q |
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||||||| |||| ||||||||||||| |||| ||||||| |
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| T |
31214708 |
aaaaaaacaacaacaactcgatggaagtaattggagattttcttcg |
31214753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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