View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0636_low_4 (Length: 706)
Name: NF0636_low_4
Description: NF0636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0636_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 30 - 610
Target Start/End: Complemental strand, 38584766 - 38584185
Alignment:
| Q |
30 |
gattatcctataactatttaactttatgnnnnnnnatcagtgaaaataaaaactttatgttttaatattggattgtgttaatatatactgtgttttacag |
129 |
Q |
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| T |
38584766 |
gattatcctataactatttaactttatgtttttttatcagtgaaaataaaaactttatgttttaatattggattgtgttaatatatactgtgttttacag |
38584667 |
T |
|
| Q |
130 |
acatgatctgatacaaattgtcgatatttaaatcttttaactatttgattatggtttgattcgagcctcgtgcatatgtaaaagaatataatgaaaatat |
229 |
Q |
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| T |
38584666 |
acatgatctgatacaaattgtcgatatttaaatcttttaactatttgattatggtttgattcgagcctcgtgcatatgtaaaagaatataatgaaaaaat |
38584567 |
T |
|
| Q |
230 |
g-caacctctcaaatctaatttcatttaccnnnnnnngtaaatataaagttccatatttagtgtttgtttgatttaaatttggtcaccaaagatttagaa |
328 |
Q |
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| T |
38584566 |
gtcaacctctcaaatctaatttcatttaccaaaaaaagtaaatataaagttccatatttagtgtttgtttgatttaaatttggtcaccaaagatttagaa |
38584467 |
T |
|
| Q |
329 |
tagtggaacacaaacaaacccatccaagtctccggctcatatacacctgctaaaaataattgaacggatgaaattgtaatcaaagtgatggatgatgaag |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38584466 |
tagtggaacacaaacaaacccatccaagtctccggctcatatacacctgctaaaaataattgaacggatgaaattgtaatcaaagtgatggatgatgaag |
38584367 |
T |
|
| Q |
429 |
gcctatatacatggccaatgaatttcctcaacggttcatagaagccatgggtcaatgcatacctataatttaaatcttgaaccaaacaatcaccaatatt |
528 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38584366 |
gcctatatacatggccaatgaatttcctcaacggttcatagaagccatgggtcaatgcatacctataatttaaatcttgaaccaaacaatcaccaatatt |
38584267 |
T |
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| Q |
529 |
atctcacaacatcatcccaaaaatagtagggaagaaaatttattgactattatttcattgccatatcaagtacttgttgagg |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38584266 |
atctcacaacatcatcccaaaaatagtagggaagaaaatttattgactattatttcattgccatatcaagtacttgttgagg |
38584185 |
T |
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