View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0636_low_6 (Length: 553)

Name: NF0636_low_6
Description: NF0636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0636_low_6
NF0636_low_6
[»] chr8 (6 HSPs)
chr8 (134-553)||(3782975-3783387)
chr8 (96-133)||(19945158-19945195)
chr8 (87-135)||(5689590-5689637)
chr8 (98-133)||(44304189-44304224)
chr8 (87-133)||(17982976-17983021)
chr8 (96-133)||(2628071-2628108)
[»] chr2 (4 HSPs)
chr2 (351-553)||(37915076-37915275)
chr2 (96-133)||(32289900-32289937)
chr2 (87-134)||(36205463-36205510)
chr2 (177-243)||(37961253-37961319)
[»] chr6 (3 HSPs)
chr6 (99-133)||(16452127-16452161)
chr6 (87-135)||(22963506-22963554)
chr6 (87-135)||(23824839-23824887)
[»] chr5 (4 HSPs)
chr5 (87-133)||(9789021-9789067)
chr5 (96-133)||(18441441-18441478)
chr5 (99-133)||(26178221-26178255)
chr5 (87-133)||(30182911-30182957)
[»] chr4 (5 HSPs)
chr4 (87-133)||(5369881-5369927)
chr4 (87-133)||(29999628-29999674)
chr4 (87-133)||(48143371-48143417)
chr4 (87-133)||(52082463-52082508)
chr4 (87-133)||(54199708-54199753)
[»] chr3 (3 HSPs)
chr3 (87-133)||(9635923-9635969)
chr3 (96-133)||(9634621-9634658)
chr3 (87-133)||(19683687-19683733)
[»] chr1 (2 HSPs)
chr1 (87-133)||(20762991-20763037)
chr1 (99-133)||(13316151-13316185)
[»] chr7 (1 HSPs)
chr7 (87-133)||(29991376-29991422)


Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 134 - 553
Target Start/End: Original strand, 3782975 - 3783387
Alignment:
Q  134 tcttccaatcttataattccttcacattccgaaaatgctccctcttatatacgctacctcaatggagactttctctccttcaccgttgctgaatccttag 233  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  3782975 tcttccaatcttataattccttcacattccgaaaatgttcccccttatatacgctacctcaatggagactctctctccttcaccattgctgaatccttag 3783074  T
Q  234 caaacttcaacctccttatttcagattcttcacaagatgttaaaaatttgcacccnnnnnnnnnnctttccgaacttgccttctcctcatactgaacaca 333  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||    
T  3783075 caaacttcaacctccttatttcagattcttcacaagatgttaaaaatttgcaccctttt-------tttccgaacttgccttctcctcatactgaacaca 3783167  T
Q  334 atgacacacgcgtcgtccctctaatggccattcaagtcaccattctacctaactctagattcgctatctgcctcacgtttaaccacattgcaggtgatgg 433  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3783168 atgacacacgcgtcgtccctctaatggccattcaagtcaccattctacctaactctggattcgctatctgcctcacgtttaaccacattgcaggtgatgg 3783267  T
Q  434 aaaatcacttcaccaattcatgaaattctggtcttatgtttccaaaaccaaaaccatcaacaacagtttatctctagaacactctctgcctcttgatctt 533  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3783268 aaaatcacttcaccaattcatgaaactctggtcatatgtttccaaaaccaaaaccatcaacaacagattatctctagaacactctctgcctcttgatctt 3783367  T
Q  534 cttccttcacatgaaagaga 553  Q
    ||||||||||||||||||||    
T  3783368 cttccttcacatgaaagaga 3783387  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 96 - 133
Target Start/End: Complemental strand, 19945195 - 19945158
Alignment:
Q  96 tttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  19945195 tttgtattggtgtgattttgagaccggaattcacaaca 19945158  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 5689590 - 5689637
Alignment:
Q  87 acatcatcatttgtattggtgtgattttgagatcggaattcacaacatc 135  Q
    |||||||  |||||||||||||||||||||| |||||||||||||||||    
T  5689590 acatcatagtttgtattggtgtgattttgag-tcggaattcacaacatc 5689637  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 133
Target Start/End: Original strand, 44304189 - 44304224
Alignment:
Q  98 tgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||||||||||||||||| ||||||||||||||    
T  44304189 tgtattggtgtgattttgagaacggaattcacaaca 44304224  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 17982976 - 17983021
Alignment:
Q  87 acatcatcatttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    |||||||  |||||||||||||||||| |||||||||||||||||||    
T  17982976 acatcatagtttgtattggtgtgattt-gagatcggaattcacaaca 17983021  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 133
Target Start/End: Original strand, 2628071 - 2628108
Alignment:
Q  96 tttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    |||||||||||||| ||| |||||||||||||||||||    
T  2628071 tttgtattggtgtggtttcgagatcggaattcacaaca 2628108  T

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Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 351 - 553
Target Start/End: Original strand, 37915076 - 37915275
Alignment:
Q  351 cctctaatggccattcaagtcaccattctacctaactctagattcgctatctgcctcacgtttaaccacattgcaggtgatggaaaatcacttcaccaat 450  Q
    ||||| |||||||||||| |||||||||||||||||||| | ||| |||| || ||| ||||||| ||| |||  |  || |||||||||||||| || |    
T  37915076 cctctcatggccattcaaatcaccattctacctaactctggcttctctatatgtctcgcgtttaaacacgttgttgcagacggaaaatcacttcatcatt 37915175  T
Q  451 tcatgaaattctggtcttatgtttccaaaaccaaaaccatcaacaacagtttatctctagaacactctctgcctcttgatcttcttccttcacatgaaag 550  Q
    |||||||||| ||| | | |||||||||| | | ||| | |||||||   || ||||| ||| |||||| |||||||||   ||||||||| ||||||||    
T  37915176 tcatgaaattttgggcatttgtttccaaagctataacaaacaacaacgagttgtctcttgaatactctccgcctcttga---tcttccttcccatgaaag 37915272  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 96 - 133
Target Start/End: Original strand, 32289900 - 32289937
Alignment:
Q  96 tttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    |||||||||||||| |||||||||||||||||||||||    
T  32289900 tttgtattggtgtggttttgagatcggaattcacaaca 32289937  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 36205510 - 36205463
Alignment:
Q  87 acatcatcatttgtattggtgtgattttgagatcggaattcacaacat 134  Q
    |||||||  |||||||| |||||||||||||| |||||||||||||||    
T  36205510 acatcatagtttgtattagtgtgattttgagaccggaattcacaacat 36205463  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 37961319 - 37961253
Alignment:
Q  177 cttatatacgctacctcaatggagactttctctccttcaccgttgctgaatccttagcaaacttcaa 243  Q
    |||| ||||| |||||| ||| ||||| | ||||||||||||| |||||||||| |||| |||||||    
T  37961319 cttacatacgttacctcgatgaagactctatctccttcaccgtagctgaatcctcagcagacttcaa 37961253  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 133
Target Start/End: Complemental strand, 16452161 - 16452127
Alignment:
Q  99 gtattggtgtgattttgagatcggaattcacaaca 133  Q
    |||||||||||||||||||||||||||||||||||    
T  16452161 gtattggtgtgattttgagatcggaattcacaaca 16452127  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 22963554 - 22963506
Alignment:
Q  87 acatcatcatttgtattggtgtgattttgagatcggaattcacaacatc 135  Q
    |||||||  ||||||||||||||||||||||   |||||||||||||||    
T  22963554 acatcatagtttgtattggtgtgattttgagtctggaattcacaacatc 22963506  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 23824839 - 23824887
Alignment:
Q  87 acatcatcatttgtattggtgtgattttgagatcggaattcacaacatc 135  Q
    |||||||  ||||||||||||||||||||||   |||||||||||||||    
T  23824839 acatcatagtttgtattggtgtgattttgagtctggaattcacaacatc 23824887  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 9789067 - 9789021
Alignment:
Q  87 acatcatcatttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    |||||||  |||||||||||||| |||||||||||||||||||||||    
T  9789067 acatcatactttgtattggtgtggttttgagatcggaattcacaaca 9789021  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 96 - 133
Target Start/End: Complemental strand, 18441478 - 18441441
Alignment:
Q  96 tttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    |||||||||||||| |||||||||||||||||||||||    
T  18441478 tttgtattggtgtggttttgagatcggaattcacaaca 18441441  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 133
Target Start/End: Original strand, 26178221 - 26178255
Alignment:
Q  99 gtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||||||| |||||||||||||||||||||||    
T  26178221 gtattggtgtggttttgagatcggaattcacaaca 26178255  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 30182911 - 30182957
Alignment:
Q  87 acatcatcatttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    |||||||  ||||| ||||||||||||||||| ||||||||||||||    
T  30182911 acatcatagtttgttttggtgtgattttgagaccggaattcacaaca 30182957  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 5369927 - 5369881
Alignment:
Q  87 acatcatcatttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    |||||||  ||||||||||||||||||||||| ||||||||||||||    
T  5369927 acatcatagtttgtattggtgtgattttgagaccggaattcacaaca 5369881  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 29999674 - 29999628
Alignment:
Q  87 acatcatcatttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    |||||||  ||||||||||||||||||||||| ||||||||||||||    
T  29999674 acatcatagtttgtattggtgtgattttgagaccggaattcacaaca 29999628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 48143371 - 48143417
Alignment:
Q  87 acatcatcatttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    |||||||  ||||||||||||||||||||||  ||||||||||||||    
T  48143371 acatcatagtttgtattggtgtgattttgagtccggaattcacaaca 48143417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 52082508 - 52082463
Alignment:
Q  87 acatcatcatttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||| ||||||||||||||||||||||| || ||||||||||||    
T  52082508 acatcataatttgtattggtgtgattttgag-tccgaattcacaaca 52082463  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 54199753 - 54199708
Alignment:
Q  87 acatcatcatttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    |||||||| |||||||||||||||||||||| || ||||||||||||    
T  54199753 acatcatcgtttgtattggtgtgattttgag-tccgaattcacaaca 54199708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 9635969 - 9635923
Alignment:
Q  87 acatcatcatttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    |||||||  ||||||||||||||||||||||| ||||||||||||||    
T  9635969 acatcatagtttgtattggtgtgattttgagaccggaattcacaaca 9635923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 96 - 133
Target Start/End: Complemental strand, 9634658 - 9634621
Alignment:
Q  96 tttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  9634658 tttgtattggtgtgattttgagaccggaattcacaaca 9634621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 19683733 - 19683687
Alignment:
Q  87 acatcatcatttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    |||||||  ||||||||||||||| ||||||| ||||||||||||||    
T  19683733 acatcatagtttgtattggtgtgagtttgagaccggaattcacaaca 19683687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 20762991 - 20763037
Alignment:
Q  87 acatcatcatttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    |||||||  ||||||||||||||||||||||| ||||||||||||||    
T  20762991 acatcatagtttgtattggtgtgattttgagaccggaattcacaaca 20763037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 133
Target Start/End: Complemental strand, 13316185 - 13316151
Alignment:
Q  99 gtattggtgtgattttgagatcggaattcacaaca 133  Q
    |||||||||||||||||||| ||||||||||||||    
T  13316185 gtattggtgtgattttgagaccggaattcacaaca 13316151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 29991376 - 29991422
Alignment:
Q  87 acatcatcatttgtattggtgtgattttgagatcggaattcacaaca 133  Q
    |||||||  ||||||||||||||| ||||||| ||||||||||||||    
T  29991376 acatcatagtttgtattggtgtgactttgagaacggaattcacaaca 29991422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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