View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0637_low_1 (Length: 477)
Name: NF0637_low_1
Description: NF0637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0637_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 17 - 449
Target Start/End: Complemental strand, 21354539 - 21354104
Alignment:
| Q |
17 |
ttgctgcattagtgaacaaagtttgtgtggaaaaattctggtggaattaaaggaatatttgtgtttacattttcattttcagtcacttggttgaagttaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
21354539 |
ttgctgcattagtgaacaaagtttgtgtggaaaaattctggtggaattaaaggaatatttgtgtttacattttcattttcagtcacttagttgaagttaa |
21354440 |
T |
|
| Q |
117 |
ccgggatacatcgcgattatgctacgatggtcggcgtacatgttctcaaggtgattcctcaacta---gcagtggctctgttgtatacacaacaacaact |
213 |
Q |
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| T |
21354439 |
ccgggatagatcgcgattgtgctgcgatggtcggtgcacatgttctcaaggtgattcctcaactaacagcagtggctctgttgtatgcacaacaacaact |
21354340 |
T |
|
| Q |
214 |
gcatgcttctgcttcttctgatgagaatatgcaaagtgaaagcacgaaaatttgctctcattttcagtatggatgtttgtttatgtgattttgttgttat |
313 |
Q |
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| T |
21354339 |
gcatgcttctgcttcttctgatgagaatatggaaagtgaaagcacgaaaatttgctctcattttcagtatggatgtttgtttatgtgattttgttgttat |
21354240 |
T |
|
| Q |
314 |
tgatgctacatcgcaaggaaaatgttgaataaaatccttgacaggaagtactattgatggagaagtctttcaaggaaatatgatgcgtcatctctttcct |
413 |
Q |
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| T |
21354239 |
tgctgctatattggaaggaaaatgtcgaataaaatcgttgacaggaagtactattgatggagaagtctttcaaggaaatatgatgcgtcatctctttcct |
21354140 |
T |
|
| Q |
414 |
aattctgaaaatataatcaagataaatgatcttgtt |
449 |
Q |
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| T |
21354139 |
aattctgaaaatatattcaagataaatgatcttgtt |
21354104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 17 - 378
Target Start/End: Complemental strand, 21174618 - 21174258
Alignment:
| Q |
17 |
ttgctgcattagtgaacaaagtttgtgtggaaaaattctggtggaattaaaggaatatt-tgtgtttacattttcattttcagtcacttggttgaagtta |
115 |
Q |
| |
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|||||||||| | ||||||| |||||| |||| ||||||||||||||||| || || |||||||| | |||||||||||||||||| ||||||||| |
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| T |
21174618 |
ttgctgcattttttaacaaagattgtgttcaaaatttctggtggaattaaagaaaacttctgtgtttaaagtttcattttcagtcacttagttgaagttt |
21174519 |
T |
|
| Q |
116 |
accgggatacatcgcgattatgctacgatggtcggcgtacatgttctcaaggtgattcctcaactagcag---tggctctgttgtatacacaacaacaac |
212 |
Q |
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| T |
21174518 |
cat---atacaccgtgcttgtgctgcaatggtcagtgtacatgttctaaaggtgattcattaactaacaacaatggctatgttgtatgcacaacaatagc |
21174422 |
T |
|
| Q |
213 |
tgcatgcttctgcttcttctgatgagaatatgcaaagtgaaagcacgaaaatttgctctcattttcagtatggatgtttgtttatgtgattttgttgtta |
312 |
Q |
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| T |
21174421 |
ttcatgcttctgcttcttctcatgagaatatggacagtgaaagaaagaaaatt-gctctcgctttcaatatggatgtttgtttatgtgattt-gttgtta |
21174324 |
T |
|
| Q |
313 |
ttgatgctacatcgcaaggaaaatgttgaataaaatccttgacaggaagtactattgatggagaag |
378 |
Q |
| |
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||| |||||||||| ||||||||||| |||||||| ||||||||||| | ||| |||||||||||| |
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|
| T |
21174323 |
ttgctgctacatcggaaggaaaatgtcgaataaaagccttgacaggaggcacttttgatggagaag |
21174258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 181 - 441
Target Start/End: Complemental strand, 44728251 - 44727995
Alignment:
| Q |
181 |
agcagtggctctgttgtatacacaacaacaactgcatgcttctgcttcttctgatgagaatatgcaaagtgaaagcacgaaaatttgctctcattttcag |
280 |
Q |
| |
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|||||||||| || | ||| |||| ||||||||||||||||||||||||||| | ||| ||||| | | |||||||| ||||| ||||||| ||||||| |
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| T |
44728251 |
agcagtggctttgctttatgcacatcaacaactgcatgcttctgcttcttctcacgaggatatggacaatgaaagcaagaaaa-ttgctctgattttcaa |
44728153 |
T |
|
| Q |
281 |
tatggatgtttgtttatgtgattttgttgttattgatgctacatcgcaaggaaaatgttgaataaaatccttgacaggaagtactattgatggagaagtc |
380 |
Q |
| |
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|||||| | ||| ||||| ||||| |||| ||| ||| |||||||| | ||||||| | ||| |||||||| |||||| |||||||| |
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| T |
44728152 |
tatggacgcgggttattgtga---tgttgctattattgcaacagaaaaaggaaaacgccaaataaaagcgttggcaggaagtgctattggtggagaagat |
44728056 |
T |
|
| Q |
381 |
tttcaaggaaatatgatgcgtcatctctttcctaattctgaaaatataatcaagataaatg |
441 |
Q |
| |
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|| | |||||||||||| ||||||||||||| ||| ||||||||| |||||| ||||| |
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|
| T |
44728055 |
ttgcttggaaatatgatgtgtcatctctttcccgattacgaaaatatattcaagagaaatg |
44727995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 42927258 - 42927206
Alignment:
| Q |
180 |
tagcagtggctctgttgtatacacaacaacaactgcatgcttctgcttcttct |
232 |
Q |
| |
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||||||||||| |||| ||| |||||||||||||||| |||||||||||||| |
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| T |
42927258 |
tagcagtggctttgttttatgcacaacaacaactgcagacttctgcttcttct |
42927206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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