View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0637_low_4 (Length: 382)

Name: NF0637_low_4
Description: NF0637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0637_low_4
NF0637_low_4
[»] chr5 (4 HSPs)
chr5 (30-361)||(9473925-9474254)
chr5 (142-195)||(20039772-20039825)
chr5 (298-359)||(7196416-7196477)
chr5 (161-207)||(7196565-7196611)
[»] chr8 (3 HSPs)
chr8 (162-361)||(26855529-26855727)
chr8 (126-195)||(26883697-26883766)
chr8 (72-104)||(7142515-7142547)
[»] chr3 (1 HSPs)
chr3 (134-186)||(4568877-4568929)
[»] chr1 (1 HSPs)
chr1 (81-210)||(12809455-12809582)
[»] chr6 (1 HSPs)
chr6 (70-103)||(11077001-11077034)
[»] chr2 (1 HSPs)
chr2 (78-106)||(7706470-7706498)


Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 30 - 361
Target Start/End: Complemental strand, 9474254 - 9473925
Alignment:
Q  30 taaccatgagttcatgtcttgcaatcggattgcatgtctccttgatgataaatttgacaagtgcaccaaactgtttcatgtaacacaacaacaagatatc 129  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  9474254 taaccatgagttcatgtct-gcaatcgggttgcatgtctccttgatgataaatttgacaggtgcaccaaactgtttcatgtaacacaacaataagatatc 9474156  T
Q  130 gtctccacatgaattgttgttttcaaccaggcaatttactaaacttataatttaaaactataaattgaggggagtttgaaaagatgtttgattacgatga 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  9474155 gtctccacatgaattgttgttttcaaccaggcaatttactaaacttataatttaaaaccataaattgaagggagtttgaaaagatgtttgattacgatga 9474056  T
Q  230 aaagtaaatgagttttttattcatattttaaacgcgattaaaattcttcgaatctcctctaccttttcgttggattaatgcaagtcttatatcaaatatg 329  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9474055 aaagtaaatgagt-ttttattcatattttaaacgcgattaaaattcttcgaatctcctctaccttttcgttggattaatgcaagtcttatatcaaatatg 9473957  T
Q  330 atctaaggattatataaatgatggctaacctc 361  Q
    || |||||||||||||||||||||||||||||    
T  9473956 atataaggattatataaatgatggctaacctc 9473925  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 20039825 - 20039772
Alignment:
Q  142 attgttgttttcaaccaggcaatttactaaacttataatttaaaactataaatt 195  Q
    |||||||||||| |  |||||||||||||||||||||||| |||||||||||||    
T  20039825 attgttgttttctattaggcaatttactaaacttataattaaaaactataaatt 20039772  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 359
Target Start/End: Complemental strand, 7196477 - 7196416
Alignment:
Q  298 gttggattaatgcaagtcttatatcaaatatgatctaaggattatataaatgatggctaacc 359  Q
    |||||||||||||| ||| |||| ||||||||| ||||||||| |||||| ||||| |||||    
T  7196477 gttggattaatgcacgtcatataccaaatatgacctaaggattgtataaacgatggttaacc 7196416  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 7196611 - 7196565
Alignment:
Q  161 caatttactaaacttataatttaaaactataaattgaggggagtttg 207  Q
    |||||||||||||||||| || |||||||||||||| ||||| ||||    
T  7196611 caatttactaaacttatatttaaaaactataaattggggggaatttg 7196565  T

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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 162 - 361
Target Start/End: Complemental strand, 26855727 - 26855529
Alignment:
Q  162 aatttactaaacttataatttaaaactataaattgaggggagtttgaaaagatgtttgattacgatgaaaagtaaatgagttttttattcatattttaaa 261  Q
    ||||||| ||||||||| |||||||||||||||| |||||| |||||||   ||||||||| | ||| ||||||||||| ||||| ||| | || || ||    
T  26855727 aatttacaaaacttatactttaaaactataaatt-aggggaatttgaaagattgtttgattgcaatgcaaagtaaatgaatttttgatttagatgttgaa 26855629  T
Q  262 cgcgattaaaattcttcgaatctcctctaccttttcgttggattaatgcaagtcttatatcaaatatgatctaaggattatataaatgatggctaacctc 361  Q
    ||   |||  |||||| |||||||||| | || || |||  ||||||||| ||  || | ||||||||| |||||| ||||||||||||||| |||||||    
T  26855628 cgttgttaggattctttgaatctcctccatctctttgttcaattaatgcatgttctaaaccaaatatgacctaaggtttatataaatgatggttaacctc 26855529  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 26883766 - 26883697
Alignment:
Q  126 tatcgtctccacatgaattgttgttttcaaccaggcaatttactaaacttataatttaaaactataaatt 195  Q
    ||||||||||||||| |||||| ||||| | |||  |||||||||||||| || || |||||||||||||    
T  26883766 tatcgtctccacatggattgttattttctaacagaaaatttactaaacttttatttaaaaactataaatt 26883697  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 7142515 - 7142547
Alignment:
Q  72 tgatgataaatttgacaagtgcaccaaactgtt 104  Q
    |||||| ||||||||||||||||||||||||||    
T  7142515 tgatgacaaatttgacaagtgcaccaaactgtt 7142547  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 4568877 - 4568929
Alignment:
Q  134 ccacatgaattgttgttttcaaccaggcaatttactaaacttataatttaaaa 186  Q
    ||||||| ||||||||||||||| |||||||||| ||||||||||||| ||||    
T  4568877 ccacatggattgttgttttcaactaggcaatttattaaacttataattaaaaa 4568929  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 210
Target Start/End: Original strand, 12809455 - 12809582
Alignment:
Q  81 atttgacaagtgcaccaaactgtttcatgtaacacaacaacaagatatcgtctccacatgaattgttgttttcaaccaggcaatttactaaacttataat 180  Q
    ||||| |||||||||| ||| |||||| |||| | |  || ||| |||| |||||||||  |||||||||| | || | ||||| || ||||||||| ||    
T  12809455 atttggcaagtgcacctaacagtttcaagtaataaagtaataagttatcatctccacattgattgttgttt-ctactatgcaatataataaacttatgat 12809553  T
Q  181 ttaaaactataaattgaggggagtttgaaa 210  Q
    | ||||||||||||||| ||||||||||||    
T  12809554 taaaaactataaattga-gggagtttgaaa 12809582  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 103
Target Start/End: Complemental strand, 11077034 - 11077001
Alignment:
Q  70 cttgatgataaatttgacaagtgcaccaaactgt 103  Q
    |||||||||||||||| |||||||||||||||||    
T  11077034 cttgatgataaatttggcaagtgcaccaaactgt 11077001  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 106
Target Start/End: Original strand, 7706470 - 7706498
Alignment:
Q  78 taaatttgacaagtgcaccaaactgtttc 106  Q
    |||||||||||||||||||||||||||||    
T  7706470 taaatttgacaagtgcaccaaactgtttc 7706498  T

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