View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0637_low_6 (Length: 327)

Name: NF0637_low_6
Description: NF0637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0637_low_6
NF0637_low_6
[»] chr2 (5 HSPs)
chr2 (66-314)||(35182931-35183179)
chr2 (102-314)||(35177010-35177222)
chr2 (66-314)||(35054097-35054345)
chr2 (146-280)||(35105027-35105161)
chr2 (146-283)||(35045188-35045325)
[»] chr6 (1 HSPs)
chr6 (7-63)||(2295251-2295307)
[»] chr7 (5 HSPs)
chr7 (112-254)||(25638405-25638547)
chr7 (112-254)||(25435461-25435603)
chr7 (112-248)||(25446353-25446489)
chr7 (116-194)||(25477968-25478046)
chr7 (112-188)||(25485349-25485425)
[»] chr5 (1 HSPs)
chr5 (139-253)||(499294-499408)
[»] chr4 (2 HSPs)
chr4 (146-262)||(31019766-31019882)
chr4 (146-262)||(31489664-31489780)


Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 66 - 314
Target Start/End: Original strand, 35182931 - 35183179
Alignment:
Q  66 agggctgtatgtctctaggnnnnnnncatctatggtttgccgtaggatttgtttctgtacagcagtagcaccgccatctttataaattttgcttacattc 165  Q
    |||||||||||||||||||       |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35182931 agggctgtatgtctctaggtttttttcatctatggtttgccgaaggatttgtttctgtacagcagtagcaccgccatctttataaattttgcttacattc 35183030  T
Q  166 tcaataaaacaacttgcatcaaactgatacgagactctatcgtataagacagaagcaagagttgtctttccgattccagccatcccccaaatgcctatag 265  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  35183031 tcaataaaacaacttgcatcaaactgataagagactctatcgtataagacagaagcaagagttgtctttctgattccagccatcccccaaatgcctatag 35183130  T
Q  266 ctcgaaattcatcatcctttgagtctaatttcaaaaggctttctaattc 314  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  35183131 ctcgaaattcataatcctttgagtctaatttcaaaaggctttctaattc 35183179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 102 - 314
Target Start/End: Original strand, 35177010 - 35177222
Alignment:
Q  102 ttgccgtaggatttgtttctgtacagcagtagcaccgccatctttataaattttgcttacattctcaataaaacaacttgcatcaaactgatacgagact 201  Q
    |||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||    
T  35177010 ttgccgaaggatttgtttctgtacagcagtggcaccaccatctttataaattttgcttacattctcaataaaacagattgcatcaaactgataggagact 35177109  T
Q  202 ctatcgtataagacagaagcaagagttgtctttccgattccagccatcccccaaatgcctatagctcgaaattcatcatcctttgagtctaatttcaaaa 301  Q
    ||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||   ||||| |||||||  | ||||| |||||||| ||    
T  35177110 ctatcatacaagacggaagcaagagttgtctttccgattccagccatcccccaaatacctataaaacgaaagtcatcattgtctgagtttaatttcagaa 35177209  T
Q  302 ggctttctaattc 314  Q
    | |||||||||||    
T  35177210 gactttctaattc 35177222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 66 - 314
Target Start/End: Original strand, 35054097 - 35054345
Alignment:
Q  66 agggctgtatgtctctaggnnnnnnncatctatggtttgccgtaggatttgtttctgtacagcagtagcaccgccatctttataaattttgcttacattc 165  Q
    ||||||||||||||||||        |||||||||||||||| |||||||||||||| | || |  |||||| |||||| |||| |||||||||||||||    
T  35054097 agggctgtatgtctctagatatttttcatctatggtttgccgaaggatttgtttctggagagaaacagcaccaccatctctatagattttgcttacattc 35054196  T
Q  166 tcaataaaacaacttgcatcaaactgatacgagactctatcgtataagacagaagcaagagttgtctttccgattccagccatcccccaaatgcctatag 265  Q
    ||||||||||| ||||||||||| ||| | |||| |||||| || |||||||| |||||||||||||||||||||||||||||||||||||| |||| |     
T  35054197 tcaataaaacagcttgcatcaaattgagaggagattctatcatacaagacagacgcaagagttgtctttccgattccagccatcccccaaatacctacaa 35054296  T
Q  266 ctcgaaattcatcatcctttgagtctaatttcaaaaggctttctaattc 314  Q
    |||||| ||||||||| | ||||  |||||||||||| |||||||||||    
T  35054297 ctcgaagttcatcatcatctgagcttaatttcaaaagactttctaattc 35054345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 280
Target Start/End: Original strand, 35105027 - 35105161
Alignment:
Q  146 tataaattttgcttacattctcaataaaacaacttgcatcaaactgatacgagactctatcgtataagacagaagcaagagttgtctttccgattccagc 245  Q
    ||||||||||||||   || | |||||||||||  |||||||||||||| || | ||||||||| || |||| |||| ||||||||||||| | |||  |    
T  35105027 tataaattttgcttgtgttatgaataaaacaacgagcatcaaactgataagaaattctatcgtacaaaacagtagcatgagttgtctttcctactccgcc 35105126  T
Q  246 catcccccaaatgcctatagctcgaaattcatcat 280  Q
    |||||||||||| || | | ||||||| |||||||    
T  35105127 catcccccaaattcccagaactcgaaagtcatcat 35105161  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 146 - 283
Target Start/End: Original strand, 35045188 - 35045325
Alignment:
Q  146 tataaattttgcttacattctcaataaaacaacttgcatcaaactgatacgagactctatcgtataagacagaagcaagagttgtctttccgattccagc 245  Q
    ||||||||||||||   || | |||||||||||  |||||||||||||| |||| ||| || || || |||| |||| ||||||||||||| | |||| |    
T  35045188 tataaattttgcttgtgttatgaataaaacaacgagcatcaaactgatatgagattctgtcatacaaaacagtagcatgagttgtctttcctactccacc 35045287  T
Q  246 catcccccaaatgcctatagctcgaaattcatcatcct 283  Q
    ||||||||| || || | | ||||||| ||||||||||    
T  35045288 catcccccatattcccagaactcgaaagtcatcatcct 35045325  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 2295307 - 2295251
Alignment:
Q  7 cgtacggtgcccaaccaatgaaagcttgattatacgtcatgatttcagctgcaacag 63  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2295307 cgtacggtgcccaaccaatgaaagcttgattatacgacatgatttcagctgcaacag 2295251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 112 - 254
Target Start/End: Complemental strand, 25638547 - 25638405
Alignment:
Q  112 atttgtttctgtacagcagtagcaccgccatctttataaattttgcttacattctcaataaaacaacttgcatcaaactgatacgagactctatcgtata 211  Q
    |||| |||||| |||||| |||||||||| |||| ||||||||||   |||||||| ||  ||||||  | |||||||||||| |||| ||| || || |    
T  25638547 atttctttctgcacagcattagcaccgccctcttcataaattttgtgaacattctcgatgtaacaacgagtatcaaactgatatgagattctgtcataca 25638448  T
Q  212 agacagaagcaagagttgtctttccgattccagccatccccca 254  Q
    ||||||  |||||||| |||||||| |||||| ||||||||||    
T  25638447 agacagttgcaagagtagtctttcctattccacccatccccca 25638405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 254
Target Start/End: Original strand, 25435461 - 25435603
Alignment:
Q  112 atttgtttctgtacagcagtagcaccgccatctttataaattttgcttacattctcaataaaacaacttgcatcaaactgatacgagactctatcgtata 211  Q
    ||||||||||| |||||| ||||||| || | || ||||| |||||| || ||||||| ||||||||  |||||||| ||||| |||| ||| || || |    
T  25435461 atttgtttctgcacagcaatagcaccaccgttttcataaaatttgctaacgttctcaacaaaacaacaagcatcaaattgatatgagattctgtcataca 25435560  T
Q  212 agacagaagcaagagttgtctttccgattccagccatccccca 254  Q
    | || |  ||||||||||||||||| |||||| |||| |||||    
T  25435561 aaacggtggcaagagttgtctttcctattccatccatacccca 25435603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 248
Target Start/End: Complemental strand, 25446489 - 25446353
Alignment:
Q  112 atttgtttctgtacagcagtagcaccgccatctttataaattttgcttacattctcaataaaacaacttgcatcaaactgatacgagactctatcgtata 211  Q
    ||||||||||| ||||||  |||||| ||||||| ||||||||| || || || |||||||||||||  |||||||| ||||| |||| ||| || || |    
T  25446489 atttgtttctgcacagcaacagcaccaccatcttcataaattttactaacgttttcaataaaacaacaagcatcaaattgatatgagattctgtcataca 25446390  T
Q  212 agacagaagcaagagttgtctttccgattccagccat 248  Q
    | ||   |||||||| ||||||||| |||||| ||||    
T  25446389 aaactttagcaagagctgtctttcctattccatccat 25446353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 25477968 - 25478046
Alignment:
Q  116 gtttctgtacagcagtagcaccgccatctttataaattttgcttacattctcaataaaacaacttgcatcaaactgata 194  Q
    ||||||| |||||| ||||||| |||||| ||||||||||||| |||| |||||  |||||||  |||||||| |||||    
T  25477968 gtttctgcacagcaatagcaccaccatctctataaattttgctgacatcctcaacgaaacaacaagcatcaaattgata 25478046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 25485425 - 25485349
Alignment:
Q  112 atttgtttctgtacagcagtagcaccgccatctttataaattttgcttacattctcaataaaacaacttgcatcaaa 188  Q
    ||||||||||| ||||||  |||||| ||||| | |||||||||||| || || |||||||||||||  ||||||||    
T  25485425 atttgtttctgcacagcaacagcaccaccatcctcataaattttgctaacgttttcaataaaacaacaagcatcaaa 25485349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 253
Target Start/End: Original strand, 499294 - 499408
Alignment:
Q  139 ccatctttataaattttgcttacattctcaataaaacaacttgcatcaaactgatacgagactctatcgtataagacagaagcaagagttgtctttccga 238  Q
    |||||| ||||||||||||| |||||||||||||| ||||  || | ||||||||| |||| | | || || ||||| |   ||||||||||||| || |    
T  499294 ccatctctataaattttgctaacattctcaataaagcaacaagcgtgaaactgatatgagattttgtcatacaagaccgtcacaagagttgtcttcccta 499393  T
Q  239 ttccagccatccccc 253  Q
    ||||| |||||||||    
T  499394 ttccacccatccccc 499408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 262
Target Start/End: Original strand, 31019766 - 31019882
Alignment:
Q  146 tataaattttgcttacattctcaataaaacaacttgcatcaaactgatacgagactctatcgtataagacagaagcaagagttgtctttccgattccagc 245  Q
    |||| |||||||||| ||  ||||||||||||| ||||||||| ||||  |||| |  | | |||||  ||| ||| ||||||||||| || |||||| |    
T  31019766 tatatattttgcttagatcatcaataaaacaacgtgcatcaaattgatgagagatttgaccatataaagcagtagccagagttgtcttccctattccacc 31019865  T
Q  246 catcccccaaatgccta 262  Q
    |||||| ||||| ||||    
T  31019866 catcccacaaattccta 31019882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 262
Target Start/End: Complemental strand, 31489780 - 31489664
Alignment:
Q  146 tataaattttgcttacattctcaataaaacaacttgcatcaaactgatacgagactctatcgtataagacagaagcaagagttgtctttccgattccagc 245  Q
    |||| |||||||||| ||  ||||||||||||| ||||||||| ||||  |||| |  | | |||||  ||| ||| ||||||||||| || |||||| |    
T  31489780 tatatattttgcttagatcatcaataaaacaacgtgcatcaaattgatgagagatttgaccatataaagcagtagccagagttgtcttccctattccacc 31489681  T
Q  246 catcccccaaatgccta 262  Q
    |||||| ||||| ||||    
T  31489680 catcccacaaattccta 31489664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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