View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0638_high_3 (Length: 454)

Name: NF0638_high_3
Description: NF0638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0638_high_3
NF0638_high_3
[»] chr2 (31 HSPs)
chr2 (315-444)||(12693850-12693978)
chr2 (53-131)||(12693538-12693616)
chr2 (214-263)||(12693745-12693794)
chr2 (301-335)||(38935945-38935979)
chr2 (304-337)||(85695-85728)
chr2 (221-258)||(9011928-9011965)
chr2 (82-131)||(22116149-22116197)
chr2 (304-337)||(39094197-39094230)
chr2 (304-341)||(41305875-41305912)
chr2 (304-335)||(5970779-5970810)
chr2 (84-127)||(9011753-9011796)
chr2 (221-264)||(25227895-25227938)
chr2 (304-335)||(37200347-37200378)
chr2 (85-131)||(19493463-19493508)
chr2 (85-131)||(20100756-20100802)
chr2 (85-131)||(20911978-20912024)
chr2 (220-258)||(23260395-23260433)
chr2 (78-131)||(22016001-22016054)
chr2 (221-258)||(28149510-28149547)
chr2 (221-258)||(28484435-28484472)
chr2 (221-258)||(30371461-30371498)
chr2 (86-127)||(34635961-34636002)
chr2 (87-131)||(85438-85482)
chr2 (81-121)||(1902923-1902963)
chr2 (87-131)||(5157317-5157361)
chr2 (87-127)||(7894219-7894259)
chr2 (221-253)||(16577196-16577228)
chr2 (304-340)||(18048812-18048848)
chr2 (224-264)||(25926955-25926994)
chr2 (306-334)||(41089411-41089439)
chr2 (305-337)||(41859661-41859693)
[»] chr4 (31 HSPs)
chr4 (86-131)||(21246474-21246519)
chr4 (86-130)||(5401759-5401803)
chr4 (224-264)||(10717979-10718019)
chr4 (224-264)||(10931748-10931788)
chr4 (224-264)||(13334894-13334934)
chr4 (221-264)||(6439256-6439298)
chr4 (221-260)||(18454268-18454307)
chr4 (304-342)||(17800748-17800786)
chr4 (301-338)||(29248239-29248277)
chr4 (86-127)||(18454448-18454489)
chr4 (86-127)||(21798330-21798371)
chr4 (304-336)||(1386033-1386065)
chr4 (224-264)||(10682753-10682792)
chr4 (224-264)||(10682864-10682903)
chr4 (224-264)||(10896393-10896432)
chr4 (224-264)||(10896504-10896543)
chr4 (221-264)||(13910793-13910837)
chr4 (224-264)||(16482234-16482273)
chr4 (87-127)||(18320714-18320754)
chr4 (87-127)||(18454191-18454231)
chr4 (224-260)||(18454375-18454411)
chr4 (224-264)||(19875918-19875958)
chr4 (87-131)||(21780121-21780164)
chr4 (100-128)||(24670500-24670528)
chr4 (87-131)||(45274098-45274141)
chr4 (88-128)||(45900528-45900568)
chr4 (224-264)||(45900592-45900631)
chr4 (224-264)||(45900622-45900661)
chr4 (221-253)||(45900729-45900761)
chr4 (221-257)||(51965447-51965483)
chr4 (305-333)||(54130364-54130392)
[»] chr5 (27 HSPs)
chr5 (87-131)||(18229748-18229792)
chr5 (83-127)||(711232-711276)
chr5 (224-264)||(26035029-26035069)
chr5 (221-264)||(12330924-12330967)
chr5 (87-129)||(711475-711517)
chr5 (89-127)||(9227103-9227141)
chr5 (304-334)||(21149126-21149156)
chr5 (221-258)||(20688871-20688908)
chr5 (82-127)||(22642341-22642386)
chr5 (86-127)||(29754046-29754087)
chr5 (221-258)||(31861567-31861604)
chr5 (221-258)||(31861670-31861707)
chr5 (223-264)||(37204926-37204966)
chr5 (86-131)||(37204995-37205039)
chr5 (224-264)||(9227031-9227070)
chr5 (80-128)||(10331904-10331952)
chr5 (83-127)||(10976766-10976809)
chr5 (88-128)||(12330854-12330893)
chr5 (301-338)||(15060160-15060199)
chr5 (99-131)||(16504961-16504993)
chr5 (304-340)||(21148796-21148832)
chr5 (304-336)||(26035109-26035141)
chr5 (83-131)||(26720448-26720496)
chr5 (83-131)||(26990197-26990245)
chr5 (304-339)||(29104440-29104476)
chr5 (223-263)||(37204822-37204861)
chr5 (87-127)||(39153415-39153455)
[»] chr3 (27 HSPs)
chr3 (221-264)||(8355510-8355553)
chr3 (221-264)||(51252119-51252162)
chr3 (78-128)||(20956933-20956983)
chr3 (78-131)||(7226058-7226111)
chr3 (221-260)||(3548299-3548338)
chr3 (88-127)||(7118087-7118126)
chr3 (305-343)||(20957195-20957234)
chr3 (221-260)||(27432763-27432802)
chr3 (221-260)||(49872893-49872932)
chr3 (221-264)||(51252227-51252270)
chr3 (85-127)||(30586159-30586201)
chr3 (304-333)||(5416064-5416093)
chr3 (304-337)||(15309082-15309115)
chr3 (80-128)||(27432673-27432722)
chr3 (301-337)||(37977528-37977565)
chr3 (304-336)||(3072420-3072452)
chr3 (79-127)||(5205373-5205421)
chr3 (304-341)||(10616798-10616837)
chr3 (87-131)||(13439628-13439671)
chr3 (87-131)||(25110076-25110119)
chr3 (87-131)||(26770253-26770297)
chr3 (221-253)||(30271625-30271657)
chr3 (221-253)||(30271722-30271754)
chr3 (221-253)||(30586245-30586277)
chr3 (305-341)||(31173611-31173647)
chr3 (304-336)||(43767917-43767949)
chr3 (224-260)||(49872790-49872826)
[»] chr1 (22 HSPs)
chr1 (221-264)||(36343226-36343269)
chr1 (87-127)||(8620211-8620251)
chr1 (221-264)||(2059265-2059307)
chr1 (221-260)||(27794432-27794471)
chr1 (221-260)||(27794537-27794576)
chr1 (221-264)||(28724473-28724516)
chr1 (221-264)||(35167952-35167994)
chr1 (224-258)||(2059373-2059407)
chr1 (221-258)||(4646834-4646871)
chr1 (301-337)||(14625368-14625405)
chr1 (79-116)||(17864828-17864865)
chr1 (86-127)||(28797380-28797420)
chr1 (227-264)||(30434429-30434466)
chr1 (306-335)||(30659569-30659598)
chr1 (86-127)||(42736612-42736653)
chr1 (306-335)||(46561541-46561570)
chr1 (87-131)||(5246513-5246557)
chr1 (221-253)||(5330598-5330630)
chr1 (221-253)||(5348313-5348345)
chr1 (84-124)||(33667654-33667694)
chr1 (224-264)||(36343333-36343372)
chr1 (304-336)||(50595999-50596031)
[»] chr6 (14 HSPs)
chr6 (304-338)||(17441399-17441433)
chr6 (84-131)||(8237635-8237682)
chr6 (221-264)||(33561902-33561944)
chr6 (304-334)||(5953163-5953193)
chr6 (89-131)||(31852007-31852049)
chr6 (305-334)||(4840687-4840716)
chr6 (221-258)||(5334719-5334756)
chr6 (304-337)||(30246088-30246121)
chr6 (301-347)||(33483684-33483732)
chr6 (221-258)||(33561801-33561838)
chr6 (221-253)||(12321125-12321157)
chr6 (221-253)||(24062340-24062372)
chr6 (301-338)||(24234326-24234365)
chr6 (83-131)||(25400792-25400840)
[»] scaffold0031 (2 HSPs)
scaffold0031 (78-127)||(2078-2127)
scaffold0031 (221-253)||(2002-2034)
[»] chr8 (20 HSPs)
chr8 (304-337)||(4105305-4105338)
chr8 (304-337)||(40652679-40652712)
chr8 (304-337)||(43945410-43945443)
chr8 (87-131)||(27543410-27543454)
chr8 (221-264)||(25601892-25601934)
chr8 (304-335)||(39808649-39808680)
chr8 (304-334)||(38500539-38500569)
chr8 (221-258)||(7988967-7989004)
chr8 (82-131)||(14329615-14329663)
chr8 (304-337)||(26447608-26447641)
chr8 (221-258)||(27198319-27198356)
chr8 (304-333)||(34374231-34374260)
chr8 (87-131)||(3912495-3912538)
chr8 (221-253)||(8307944-8307976)
chr8 (224-264)||(12330404-12330443)
chr8 (221-253)||(14329544-14329576)
chr8 (224-264)||(15152235-15152275)
chr8 (88-128)||(16093608-16093648)
chr8 (221-253)||(25601795-25601827)
chr8 (221-253)||(43945344-43945376)
[»] chr7 (26 HSPs)
chr7 (304-336)||(16902362-16902394)
chr7 (221-264)||(13286808-13286851)
chr7 (221-260)||(24205295-24205334)
chr7 (221-260)||(24206813-24206852)
chr7 (221-260)||(31186743-31186782)
chr7 (304-339)||(44414103-44414138)
chr7 (89-131)||(44568849-44568890)
chr7 (304-334)||(48104510-48104540)
chr7 (85-130)||(12180850-12180895)
chr7 (78-127)||(13286884-13286933)
chr7 (221-258)||(15037304-15037341)
chr7 (86-127)||(15037424-15037465)
chr7 (223-264)||(19410698-19410738)
chr7 (87-128)||(21811414-21811455)
chr7 (82-131)||(24845632-24845680)
chr7 (86-131)||(37079803-37079848)
chr7 (221-253)||(1693299-1693331)
chr7 (79-127)||(5766630-5766676)
chr7 (87-127)||(12814593-12814633)
chr7 (224-260)||(13279259-13279295)
chr7 (86-130)||(14079012-14079056)
chr7 (86-130)||(14389040-14389084)
chr7 (221-253)||(19410592-19410624)
chr7 (99-131)||(24204823-24204855)
chr7 (221-253)||(31186848-31186880)
chr7 (87-127)||(38192961-38193001)
[»] scaffold0002 (1 HSPs)
scaffold0002 (225-264)||(342491-342530)
[»] scaffold0809 (1 HSPs)
scaffold0809 (304-334)||(3770-3800)
[»] scaffold0041 (1 HSPs)
scaffold0041 (224-258)||(38125-38159)
[»] scaffold0769 (1 HSPs)
scaffold0769 (86-127)||(3912-3953)
[»] scaffold0009 (1 HSPs)
scaffold0009 (83-128)||(150243-150288)
[»] scaffold0727 (1 HSPs)
scaffold0727 (224-264)||(903-942)
[»] scaffold0450 (1 HSPs)
scaffold0450 (221-253)||(8039-8071)


Alignment Details
Target: chr2 (Bit Score: 118; Significance: 5e-60; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 315 - 444
Target Start/End: Original strand, 12693850 - 12693978
Alignment:
Q  315 ggggtaaagacctattaacccttatttatatatgttttatttgtaggaaggaggtatagaagtgatgatgtgactatagtttgtccattgtattatcctc 414  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12693850 ggggtaaagacctattaacc-ttatttatatatgttttatttgtgggaaggaggtatagaagtgatgatgtgactatagtttgtccattgtattatcctc 12693948  T
Q  415 atggaaaaaggtgtagaattcatagtataa 444  Q
    ||||||||||||||||||||||||||||||    
T  12693949 atggaaaaaggtgtagaattcatagtataa 12693978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 53 - 131
Target Start/End: Original strand, 12693538 - 12693616
Alignment:
Q  53 caagtgcttggtcgatcttgtccgcattatttatagggttaatatatctttacacccctgtaatataggtcattttcgg 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  12693538 caagtgcttggtcgatcttgtccgcattatttatagggttaatatgtctttacacccttgtaatataggtcattttcgg 12693616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 12693745 - 12693794
Alignment:
Q  214 ggcttaataggggggtaaaccaaaacaaaaatattttacacgggggtaaa 263  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  12693745 ggcttaatagaggggtaaaccaaaacaaaaatattttacacgggtgtaaa 12693794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 335
Target Start/End: Complemental strand, 38935979 - 38935945
Alignment:
Q  301 tgtcctatattacaggggtaaagacctattaaccc 335  Q
    |||||||||||||||||||||||||||||||||||    
T  38935979 tgtcctatattacaggggtaaagacctattaaccc 38935945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 304 - 337
Target Start/End: Original strand, 85695 - 85728
Alignment:
Q  304 cctatattacaggggtaaagacctattaaccctt 337  Q
    ||||||||||||||||||||||||||||||||||    
T  85695 cctatattacaggggtaaagacctattaaccctt 85728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 9011928 - 9011965
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttacacgggg 258  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  9011928 taggggggtaaaccaaaacaaaaatattttacaagggg 9011965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 22116149 - 22116197
Alignment:
Q  82 tttatagggttaatatatctttacacccctgtaatataggtcattttcgg 131  Q
    |||||||||||||||  ||||||| |||||||||||||||||||||||||    
T  22116149 tttatagggttaataggtctttac-cccctgtaatataggtcattttcgg 22116197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 304 - 337
Target Start/End: Complemental strand, 39094230 - 39094197
Alignment:
Q  304 cctatattacaggggtaaagacctattaaccctt 337  Q
    ||||||||||||||||||||||||||||||||||    
T  39094230 cctatattacaggggtaaagacctattaaccctt 39094197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 304 - 341
Target Start/End: Complemental strand, 41305912 - 41305875
Alignment:
Q  304 cctatattacaggggtaaagacctattaacccttattt 341  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  41305912 cctatattacaggggtaaagacctattaaccctaattt 41305875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 335
Target Start/End: Original strand, 5970779 - 5970810
Alignment:
Q  304 cctatattacaggggtaaagacctattaaccc 335  Q
    ||||||||||||||||||||||||||||||||    
T  5970779 cctatattacaggggtaaagacctattaaccc 5970810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 127
Target Start/End: Original strand, 9011753 - 9011796
Alignment:
Q  84 tatagggttaatatatctttacacccctgtaatataggtcattt 127  Q
    ||||||||||||| |||||||| || ||||||||||||||||||    
T  9011753 tatagggttaatagatctttactccactgtaatataggtcattt 9011796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 264
Target Start/End: Complemental strand, 25227938 - 25227895
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttacacgggggtaaat 264  Q
    |||||||||||| |||||||||||||||||| | ||||||||||    
T  25227938 taggggggtaaatcaaaacaaaaatattttagaggggggtaaat 25227895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 335
Target Start/End: Complemental strand, 37200378 - 37200347
Alignment:
Q  304 cctatattacaggggtaaagacctattaaccc 335  Q
    ||||||||||||||||||||||||||||||||    
T  37200378 cctatattacaggggtaaagacctattaaccc 37200347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 19493508 - 19493463
Alignment:
Q  85 atagggttaatatatctttacacccctgtaatataggtcattttcgg 131  Q
    ||||||||||||  ||||||| |||||||||||||||||||||||||    
T  19493508 atagggttaataggtctttac-cccctgtaatataggtcattttcgg 19493463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 20100756 - 20100802
Alignment:
Q  85 atagggttaatatatctttacacccctgtaatataggtcattttcgg 131  Q
    |||||||||||||  |||| ||||||||||||||| |||||||||||    
T  20100756 atagggttaatattgcttttcacccctgtaatatatgtcattttcgg 20100802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 20911978 - 20912024
Alignment:
Q  85 atagggttaatatatctttacacccctgtaatataggtcattttcgg 131  Q
    ||||||||||||   |||| |||||||||||||||||||||||||||    
T  20911978 atagggttaatagtgcttttcacccctgtaatataggtcattttcgg 20912024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 258
Target Start/End: Complemental strand, 23260433 - 23260395
Alignment:
Q  220 ataggggggtaaaccaaaacaaaaatattttacacgggg 258  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  23260433 ataggggggtaaatcaaaacaaaaatattttacaggggg 23260395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 22016001 - 22016054
Alignment:
Q  78 attatttatagggttaatatatctttacacccctgtaatataggtcattttcgg 131  Q
    ||||||| |||||||||||    |||||||||||| ||||||||||||||||||    
T  22016001 attatttctagggttaatagtgttttacacccctgcaatataggtcattttcgg 22016054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 28149547 - 28149510
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttacacgggg 258  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  28149547 taggggggtaaatcaaaacaaaaatattttacaggggg 28149510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 28484472 - 28484435
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttacacgggg 258  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  28484472 taggggggtaaatcaaaacaaaaatattttacaggggg 28484435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 30371498 - 30371461
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttacacgggg 258  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  30371498 taggggggtaaatcaaaacaaaaatattttacaggggg 30371461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 34636002 - 34635961
Alignment:
Q  86 tagggttaatatatctttacacccctgtaatataggtcattt 127  Q
    |||||||||||  ||||||| |||||||||||||||||||||    
T  34636002 tagggttaataggtctttacccccctgtaatataggtcattt 34635961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 85438 - 85482
Alignment:
Q  87 agggttaatatatctttacacccctgtaatataggtcattttcgg 131  Q
    ||||||||||  ||||||| ||| |||||||||||||||||||||    
T  85438 agggttaataggtctttacccccttgtaatataggtcattttcgg 85482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 1902923 - 1902963
Alignment:
Q  81 atttatagggttaatatatctttacacccctgtaatatagg 121  Q
    ||||||||||||||||  ||||||| |||||||||||||||    
T  1902923 atttatagggttaataggtctttacccccctgtaatatagg 1902963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 5157361 - 5157317
Alignment:
Q  87 agggttaatatatctttacacccctgtaatataggtcattttcgg 131  Q
    ||||||||||   |||| |||||||||||||||||||||||||||    
T  5157361 agggttaatagtgcttttcacccctgtaatataggtcattttcgg 5157317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 7894259 - 7894219
Alignment:
Q  87 agggttaatatatctttacacccctgtaatataggtcattt 127  Q
    |||||||||| |||||||| || ||||||||||||||||||    
T  7894259 agggttaatagatctttacccctctgtaatataggtcattt 7894219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 253
Target Start/End: Complemental strand, 16577228 - 16577196
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttaca 253  Q
    |||||||||||| ||||||||||||||||||||    
T  16577228 taggggggtaaatcaaaacaaaaatattttaca 16577196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 340
Target Start/End: Complemental strand, 18048848 - 18048812
Alignment:
Q  304 cctatattacaggggtaaagacctattaacccttatt 340  Q
    ||||||||||||||||||||  |||||||||||||||    
T  18048848 cctatattacaggggtaaagcactattaacccttatt 18048812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 264
Target Start/End: Complemental strand, 25926994 - 25926955
Alignment:
Q  224 gggggtaaaccaaaacaaaaatattttacacgggggtaaat 264  Q
    ||||||||| |||||||||||||||||||| ||||||||||    
T  25926994 gggggtaaatcaaaacaaaaatattttaca-gggggtaaat 25926955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 334
Target Start/End: Original strand, 41089411 - 41089439
Alignment:
Q  306 tatattacaggggtaaagacctattaacc 334  Q
    |||||||||||||||||||||||||||||    
T  41089411 tatattacaggggtaaagacctattaacc 41089439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 41859661 - 41859693
Alignment:
Q  305 ctatattacaggggtaaagacctattaaccctt 337  Q
    |||||||||||||||||||||||||||| ||||    
T  41859661 ctatattacaggggtaaagacctattaatcctt 41859693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 21246474 - 21246519
Alignment:
Q  86 tagggttaatatatctttacacccctgtaatataggtcattttcgg 131  Q
    |||||||||||  |||||||||||||||||||||||||||||||||    
T  21246474 tagggttaataggtctttacacccctgtaatataggtcattttcgg 21246519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 5401759 - 5401803
Alignment:
Q  86 tagggttaatatatctttacacccctgtaatataggtcattttcg 130  Q
    |||||||||||  ||||||| ||||||||||||||||||||||||    
T  5401759 tagggttaataggtctttacccccctgtaatataggtcattttcg 5401803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 264
Target Start/End: Complemental strand, 10718019 - 10717979
Alignment:
Q  224 gggggtaaaccaaaacaaaaatattttacacgggggtaaat 264  Q
    ||||||||| |||||||||||||||||||| ||||||||||    
T  10718019 gggggtaaatcaaaacaaaaatattttacaggggggtaaat 10717979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 264
Target Start/End: Complemental strand, 10931788 - 10931748
Alignment:
Q  224 gggggtaaaccaaaacaaaaatattttacacgggggtaaat 264  Q
    ||||||||| |||||||||||||||||||| ||||||||||    
T  10931788 gggggtaaatcaaaacaaaaatattttacaggggggtaaat 10931748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 264
Target Start/End: Complemental strand, 13334934 - 13334894
Alignment:
Q  224 gggggtaaaccaaaacaaaaatattttacacgggggtaaat 264  Q
    ||||||||| |||||||||||||||||||| ||||||||||    
T  13334934 gggggtaaatcaaaacaaaaatattttacaagggggtaaat 13334894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 264
Target Start/End: Complemental strand, 6439298 - 6439256
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttacacgggggtaaat 264  Q
    |||||||||||| |||||||||||||||||||| ||||||||||    
T  6439298 taggggggtaaatcaaaacaaaaatattttaca-gggggtaaat 6439256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 260
Target Start/End: Complemental strand, 18454307 - 18454268
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttacacgggggt 260  Q
    |||||||||||| |||||||||||||||||||| ||||||    
T  18454307 taggggggtaaatcaaaacaaaaatattttacaagggggt 18454268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 342
Target Start/End: Complemental strand, 17800786 - 17800748
Alignment:
Q  304 cctatattacaggggtaaagacctattaacccttattta 342  Q
    ||||||||||||| ||||||||||||||||||| |||||    
T  17800786 cctatattacaggagtaaagacctattaaccctaattta 17800748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 338
Target Start/End: Complemental strand, 29248277 - 29248239
Alignment:
Q  301 tgtcctatattacagggg-taaagacctattaaccctta 338  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  29248277 tgtcctatattacagggggtaaagacctattaaccctta 29248239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 18454489 - 18454448
Alignment:
Q  86 tagggttaatatatctttacacccctgtaatataggtcattt 127  Q
    |||||||||||  ||||||| |||||||||||||||||||||    
T  18454489 tagggttaataggtctttacccccctgtaatataggtcattt 18454448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 21798330 - 21798371
Alignment:
Q  86 tagggttaatatatctttacacccctgtaatataggtcattt 127  Q
    |||||||||||  ||||||| |||||||||||||||||||||    
T  21798330 tagggttaataggtctttacccccctgtaatataggtcattt 21798371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 336
Target Start/End: Complemental strand, 1386065 - 1386033
Alignment:
Q  304 cctatattacaggggtaaagacctattaaccct 336  Q
    |||||||||||||| ||||||||||||||||||    
T  1386065 cctatattacagggataaagacctattaaccct 1386033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 264
Target Start/End: Complemental strand, 10682792 - 10682753
Alignment:
Q  224 gggggtaaaccaaaacaaaaatattttacacgggggtaaat 264  Q
    ||||||||| |||||||||||||||||||| ||||||||||    
T  10682792 gggggtaaatcaaaacaaaaatattttaca-gggggtaaat 10682753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 10682864 - 10682903
Alignment:
Q  224 gggggtaaaccaaaacaaaaatattttacacgggggtaaat 264  Q
    ||||||||| |||||||||||||||||||| ||||||||||    
T  10682864 gggggtaaatcaaaacaaaaatattttaca-gggggtaaat 10682903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 264
Target Start/End: Complemental strand, 10896432 - 10896393
Alignment:
Q  224 gggggtaaaccaaaacaaaaatattttacacgggggtaaat 264  Q
    ||||||||| |||||||||||||||||||| ||||||||||    
T  10896432 gggggtaaatcaaaacaaaaatattttaca-gggggtaaat 10896393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 10896504 - 10896543
Alignment:
Q  224 gggggtaaaccaaaacaaaaatattttacacgggggtaaat 264  Q
    ||||||||| |||||||||||||||||||| ||||||||||    
T  10896504 gggggtaaatcaaaacaaaaatattttaca-gggggtaaat 10896543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 264
Target Start/End: Original strand, 13910793 - 13910837
Alignment:
Q  221 taggggggtaaaccaaaa-caaaaatattttacacgggggtaaat 264  Q
    ||||||||||| |||||| ||||||||||||||| ||||||||||    
T  13910793 taggggggtaatccaaaaacaaaaatattttacaggggggtaaat 13910837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 16482234 - 16482273
Alignment:
Q  224 gggggtaaaccaaaacaaaaatattttacacgggggtaaat 264  Q
    ||||||||| |||||||||||||||||||| ||||||||||    
T  16482234 gggggtaaatcaaaacaaaaatattttaca-gggggtaaat 16482273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 18320754 - 18320714
Alignment:
Q  87 agggttaatatatctttacacccctgtaatataggtcattt 127  Q
    ||||||||||  ||||||| |||||||||||||||||||||    
T  18320754 agggttaataggtctttacccccctgtaatataggtcattt 18320714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 18454191 - 18454231
Alignment:
Q  87 agggttaatatatctttacacccctgtaatataggtcattt 127  Q
    ||||||||||  ||||||| |||||||||||||||||||||    
T  18454191 agggttaataggtctttacccccctgtaatataggtcattt 18454231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 18454375 - 18454411
Alignment:
Q  224 gggggtaaaccaaaacaaaaatattttacacgggggt 260  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  18454375 gggggtaaagcaaaacaaaaatattttacaggggggt 18454411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 19875918 - 19875958
Alignment:
Q  224 gggggtaaaccaaaacaaaaatattttacacgggggtaaat 264  Q
    ||||||||| |||||||| || |||||||||||||||||||    
T  19875918 gggggtaaatcaaaacaataaaattttacacgggggtaaat 19875958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 21780121 - 21780164
Alignment:
Q  87 agggttaatatatctttacacccctgtaatataggtcattttcgg 131  Q
    ||||||||||  ||||||| |||||||||||||||||||||||||    
T  21780121 agggttaataggtctttac-cccctgtaatataggtcattttcgg 21780164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 128
Target Start/End: Original strand, 24670500 - 24670528
Alignment:
Q  100 ctttacacccctgtaatataggtcatttt 128  Q
    |||||||||||||||||||||||||||||    
T  24670500 ctttacacccctgtaatataggtcatttt 24670528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 45274141 - 45274098
Alignment:
Q  87 agggttaatatatctttacacccctgtaatataggtcattttcgg 131  Q
    ||||||||||| |||||| || |||||||||||||||||||||||    
T  45274141 agggttaatatgtcttta-actcctgtaatataggtcattttcgg 45274098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 45900528 - 45900568
Alignment:
Q  88 gggttaatatatctttacacccctgtaatataggtcatttt 128  Q
    |||||||||  ||||||| ||||||||||||||||||||||    
T  45900528 gggttaataggtctttacccccctgtaatataggtcatttt 45900568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 264
Target Start/End: Complemental strand, 45900631 - 45900592
Alignment:
Q  224 gggggtaaaccaaaacaaaaatattttacacgggggtaaat 264  Q
    ||||||||| |||||||||||||||||||| ||||||||||    
T  45900631 gggggtaaatcaaaacaaaaatattttaca-gggggtaaat 45900592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 264
Target Start/End: Complemental strand, 45900661 - 45900622
Alignment:
Q  224 gggggtaaaccaaaacaaaaatattttacacgggggtaaat 264  Q
    ||||||||| |||||||||||||||||||| ||||||||||    
T  45900661 gggggtaaatcaaaacaaaaatattttaca-gggggtaaat 45900622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 253
Target Start/End: Original strand, 45900729 - 45900761
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttaca 253  Q
    |||||||||||| ||||||||||||||||||||    
T  45900729 taggggggtaaatcaaaacaaaaatattttaca 45900761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 257
Target Start/End: Complemental strand, 51965483 - 51965447
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttacacggg 257  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  51965483 tagggaggtaaatcaaaacaaaaatattttacacggg 51965447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 333
Target Start/End: Complemental strand, 54130392 - 54130364
Alignment:
Q  305 ctatattacaggggtaaagacctattaac 333  Q
    |||||||||||||||||||||||||||||    
T  54130392 ctatattacaggggtaaagacctattaac 54130364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 18229748 - 18229792
Alignment:
Q  87 agggttaatatatctttacacccctgtaatataggtcattttcgg 131  Q
    ||||||||||  |||||||||||||||||||||||||||||||||    
T  18229748 agggttaataggtctttacacccctgtaatataggtcattttcgg 18229792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 711232 - 711276
Alignment:
Q  83 ttatagggttaatatatctttacacccctgtaatataggtcattt 127  Q
    ||||||||||||||  ||||||| |||||||||||||||||||||    
T  711232 ttatagggttaataggtctttacccccctgtaatataggtcattt 711276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 26035029 - 26035069
Alignment:
Q  224 gggggtaaaccaaaacaaaaatattttacacgggggtaaat 264  Q
    ||||||||| |||||||||||||||||||| ||||||||||    
T  26035029 gggggtaaatcaaaacaaaaatattttacaagggggtaaat 26035069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 264
Target Start/End: Complemental strand, 12330967 - 12330924
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttacacgggggtaaat 264  Q
    |||||||||||| |||||||||||||||||||| | ||||||||    
T  12330967 taggggggtaaatcaaaacaaaaatattttacaagagggtaaat 12330924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 711517 - 711475
Alignment:
Q  87 agggttaatatatctttacacccctgtaatataggtcattttc 129  Q
    ||||||||||  ||||||| |||||||||||||||||||||||    
T  711517 agggttaataggtctttacccccctgtaatataggtcattttc 711475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 127
Target Start/End: Complemental strand, 9227141 - 9227103
Alignment:
Q  89 ggttaatatatctttacacccctgtaatataggtcattt 127  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  9227141 ggttaataggtctttacacccctgtaatataggtcattt 9227103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 334
Target Start/End: Original strand, 21149126 - 21149156
Alignment:
Q  304 cctatattacaggggtaaagacctattaacc 334  Q
    |||||||||||||||||||||||||||||||    
T  21149126 cctatattacaggggtaaagacctattaacc 21149156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 20688908 - 20688871
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttacacgggg 258  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  20688908 taggggggtaaatcaaaacaaaaatattttacaggggg 20688871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 127
Target Start/End: Complemental strand, 22642386 - 22642341
Alignment:
Q  82 tttatagggttaatatatctttacacccctgtaatataggtcattt 127  Q
    |||||||||||||||  ||||||| || ||||||||||||||||||    
T  22642386 tttatagggttaataggtctttacccctctgtaatataggtcattt 22642341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 29754046 - 29754087
Alignment:
Q  86 tagggttaatatatctttacacccctgtaatataggtcattt 127  Q
    ||||||||||| |||||||| ||||| |||||||||||||||    
T  29754046 tagggttaatagatctttacccccctataatataggtcattt 29754087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 31861604 - 31861567
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttacacgggg 258  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  31861604 taggggggtaaatcaaaacaaaaatattttacaggggg 31861567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 31861670 - 31861707
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttacacgggg 258  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  31861670 taggggggtaaatcaaaacaaaaatattttacaggggg 31861707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 264
Target Start/End: Original strand, 37204926 - 37204966
Alignment:
Q  223 ggggggtaaaccaaaacaaaaatattttacacgggggtaaat 264  Q
    |||||||||| |||||||||||||||||||| ||||||||||    
T  37204926 ggggggtaaatcaaaacaaaaatattttaca-gggggtaaat 37204966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 37205039 - 37204995
Alignment:
Q  86 tagggttaatatatctttacacccctgtaatataggtcattttcgg 131  Q
    |||||||||||| ||||||| || ||||||||||||||||||||||    
T  37205039 tagggttaatatgtctttac-cctctgtaatataggtcattttcgg 37204995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 9227031 - 9227070
Alignment:
Q  224 gggggtaaaccaaaacaaaaatattttacacgggggtaaat 264  Q
    ||||||||| |||||||||||||||||||| ||||||||||    
T  9227031 gggggtaaatcaaaacaaaaatattttaca-gggggtaaat 9227070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 10331952 - 10331904
Alignment:
Q  80 tatttatagggttaatatatctttacacccctgtaatataggtcatttt 128  Q
    ||||||||||||||||    |||||| ||||||||||||||||||||||    
T  10331952 tatttatagggttaatggtactttacccccctgtaatataggtcatttt 10331904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 127
Target Start/End: Complemental strand, 10976809 - 10976766
Alignment:
Q  83 ttatagggttaatatatctttacacccctgtaatataggtcattt 127  Q
    ||||||||||||||  ||||||| |||||||||||||||||||||    
T  10976809 ttatagggttaataggtctttac-cccctgtaatataggtcattt 10976766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 12330854 - 12330893
Alignment:
Q  88 gggttaatatatctttacacccctgtaatataggtcatttt 128  Q
    |||||||||| |||||| |||||||||||||||||||||||    
T  12330854 gggttaatatgtcttta-acccctgtaatataggtcatttt 12330893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 338
Target Start/End: Complemental strand, 15060199 - 15060160
Alignment:
Q  301 tgtcctatattacagggg--taaagacctattaaccctta 338  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  15060199 tgtcctatattacaggggggtaaagacctattaaccctta 15060160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 16504993 - 16504961
Alignment:
Q  99 tctttacacccctgtaatataggtcattttcgg 131  Q
    ||||||| |||||||||||||||||||||||||    
T  16504993 tctttacccccctgtaatataggtcattttcgg 16504961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 340
Target Start/End: Complemental strand, 21148832 - 21148796
Alignment:
Q  304 cctatattacaggggtaaagacctattaacccttatt 340  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  21148832 cctatattacaggggtaaaaacctattatcccttatt 21148796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 336
Target Start/End: Original strand, 26035109 - 26035141
Alignment:
Q  304 cctatattacaggggtaaagacctattaaccct 336  Q
    |||||||||||||||||||||||| ||||||||    
T  26035109 cctatattacaggggtaaagacctcttaaccct 26035141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 131
Target Start/End: Complemental strand, 26720496 - 26720448
Alignment:
Q  83 ttatagggttaatatatctttacacccctgtaatataggtcattttcgg 131  Q
    ||||||||||||||   |||| ||||||||||||||||| |||||||||    
T  26720496 ttatagggttaataatgcttttcacccctgtaatataggccattttcgg 26720448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 131
Target Start/End: Complemental strand, 26990245 - 26990197
Alignment:
Q  83 ttatagggttaatatatctttacacccctgtaatataggtcattttcgg 131  Q
    ||||||||||||||   |||| ||||||||||||||||| |||||||||    
T  26990245 ttatagggttaataatgcttttcacccctgtaatataggccattttcgg 26990197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 339
Target Start/End: Complemental strand, 29104476 - 29104440
Alignment:
Q  304 cctatattacagggg-taaagacctattaacccttat 339  Q
    ||||||||||||||| |||||||||||||||||||||    
T  29104476 cctatattacagggggtaaagacctattaacccttat 29104440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 37204861 - 37204822
Alignment:
Q  223 ggggggtaaaccaaaacaaaaatattttacacgggggtaaa 263  Q
    |||||||||| |||||||||||||||||||| |||||||||    
T  37204861 ggggggtaaatcaaaacaaaaatattttaca-gggggtaaa 37204822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 39153415 - 39153455
Alignment:
Q  87 agggttaatatatctttacacccctgtaatataggtcattt 127  Q
    ||||||||||  ||||||| |||||||||||||||||||||    
T  39153415 agggttaataggtctttacccccctgtaatataggtcattt 39153455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 264
Target Start/End: Original strand, 8355510 - 8355553
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttacacgggggtaaat 264  Q
    |||||||||||| |||||||||||||||||||| ||||||||||    
T  8355510 taggggggtaaatcaaaacaaaaatattttacaagggggtaaat 8355553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 264
Target Start/End: Complemental strand, 51252162 - 51252119
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttacacgggggtaaat 264  Q
    |||||||||||| |||||||||||||||||||| ||||||||||    
T  51252162 taggggggtaaatcaaaacaaaaatattttacaagggggtaaat 51252119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 20956933 - 20956983
Alignment:
Q  78 attatttatagggttaatatatctttacacccctgtaatataggtcatttt 128  Q
    ||||||||| |||||||||  ||||||||||||||||||||| ||||||||    
T  20956933 attatttattgggttaataggtctttacacccctgtaatatatgtcatttt 20956983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 7226058 - 7226111
Alignment:
Q  78 attatttatagggttaatatatctttacacccctgtaatataggtcattttcgg 131  Q
    |||| ||||||||||||||   |||||| |||||||||||||||||||||||||    
T  7226058 attaattatagggttaatagtgctttacccccctgtaatataggtcattttcgg 7226111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 260
Target Start/End: Original strand, 3548299 - 3548338
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttacacgggggt 260  Q
    |||||||||||| |||||||||||||||||||| ||||||    
T  3548299 taggggggtaaatcaaaacaaaaatattttacaagggggt 3548338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 127
Target Start/End: Original strand, 7118087 - 7118126
Alignment:
Q  88 gggttaatatatctttacacccctgtaatataggtcattt 127  Q
    |||||||||  |||||||||||||||||||||||||||||    
T  7118087 gggttaataggtctttacacccctgtaatataggtcattt 7118126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 343
Target Start/End: Original strand, 20957195 - 20957234
Alignment:
Q  305 ctatattacagggg-taaagacctattaacccttatttat 343  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  20957195 ctatattacagggggtaaagacctattaacccttatttat 20957234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 260
Target Start/End: Original strand, 27432763 - 27432802
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttacacgggggt 260  Q
    |||||||||||| |||||||||||||||||||| ||||||    
T  27432763 taggggggtaaatcaaaacaaaaatattttacaagggggt 27432802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 260
Target Start/End: Original strand, 49872893 - 49872932
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttacacgggggt 260  Q
    |||||||||||| |||||||||||||||||||| ||||||    
T  49872893 taggggggtaaatcaaaacaaaaatattttacaagggggt 49872932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 264
Target Start/End: Original strand, 51252227 - 51252270
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttacacgggggtaaat 264  Q
    ||||| |||||| |||||||||||||||||||| ||||||||||    
T  51252227 tagggaggtaaatcaaaacaaaaatattttacaggggggtaaat 51252270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 30586159 - 30586201
Alignment:
Q  85 atagggttaatatatctttacacccctgtaatataggtcattt 127  Q
    ||||||||||||  ||||||| |||||||||||||||||||||    
T  30586159 atagggttaataggtctttacccccctgtaatataggtcattt 30586201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 333
Target Start/End: Complemental strand, 5416093 - 5416064
Alignment:
Q  304 cctatattacaggggtaaagacctattaac 333  Q
    ||||||||||||||||||||||||||||||    
T  5416093 cctatattacaggggtaaagacctattaac 5416064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 337
Target Start/End: Complemental strand, 15309115 - 15309082
Alignment:
Q  304 cctatattacaggggtaaagacctattaaccctt 337  Q
    ||||||||||||||||||| ||||||||||||||    
T  15309115 cctatattacaggggtaaaaacctattaaccctt 15309082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 27432673 - 27432722
Alignment:
Q  80 tatttata-gggttaatatatctttacacccctgtaatataggtcatttt 128  Q
    |||||||| |||||||||  ||||||| ||||||||||||||||||||||    
T  27432673 tatttatatgggttaataggtctttacccccctgtaatataggtcatttt 27432722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 37977528 - 37977565
Alignment:
Q  301 tgtcctatattacagggg-taaagacctattaaccctt 337  Q
    |||||||||||||||||| |||||||||||||||||||    
T  37977528 tgtcctatattacagggggtaaagacctattaaccctt 37977565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 336
Target Start/End: Complemental strand, 3072452 - 3072420
Alignment:
Q  304 cctatattacaggggtaaagacctattaaccct 336  Q
    |||||||||||| ||||||||||||||||||||    
T  3072452 cctatattacagaggtaaagacctattaaccct 3072420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 5205421 - 5205373
Alignment:
Q  79 ttatttatagggttaatatatctttacacccctgtaatataggtcattt 127  Q
    |||||| |||||||||||  | ||||| |||||||||||||||||||||    
T  5205421 ttatttttagggttaataggtttttacccccctgtaatataggtcattt 5205373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 341
Target Start/End: Original strand, 10616798 - 10616837
Alignment:
Q  304 cctatattacagggg--taaagacctattaacccttattt 341  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  10616798 cctatattacaggggggtaaagacctattaacccttattt 10616837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 13439628 - 13439671
Alignment:
Q  87 agggttaatatatctttacacccctgtaatataggtcattttcgg 131  Q
    |||||||||| | |||||| |||||||||||||||||||||||||    
T  13439628 agggttaataaagctttac-cccctgtaatataggtcattttcgg 13439671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 25110119 - 25110076
Alignment:
Q  87 agggttaatatatctttacacccctgtaatataggtcattttcgg 131  Q
    ||||||||||  ||||||||||| |||||||||||||||||||||    
T  25110119 agggttaataggtctttacaccc-tgtaatataggtcattttcgg 25110076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 26770297 - 26770253
Alignment:
Q  87 agggttaatatatctttacacccctgtaatataggtcattttcgg 131  Q
    ||||||||||   |||||| |||||||||||||||||||||||||    
T  26770297 agggttaatagtgctttacccccctgtaatataggtcattttcgg 26770253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 253
Target Start/End: Complemental strand, 30271657 - 30271625
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttaca 253  Q
    |||||||||||| ||||||||||||||||||||    
T  30271657 taggggggtaaatcaaaacaaaaatattttaca 30271625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 253
Target Start/End: Original strand, 30271722 - 30271754
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttaca 253  Q
    |||||||||||| ||||||||||||||||||||    
T  30271722 taggggggtaaatcaaaacaaaaatattttaca 30271754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 253
Target Start/End: Complemental strand, 30586277 - 30586245
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttaca 253  Q
    |||||||||||| ||||||||||||||||||||    
T  30586277 taggggggtaaatcaaaacaaaaatattttaca 30586245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 341
Target Start/End: Original strand, 31173611 - 31173647
Alignment:
Q  305 ctatattacaggggtaaagacctattaacccttattt 341  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  31173611 ctatattacaggggtaaagacctattaatcctaattt 31173647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 336
Target Start/End: Original strand, 43767917 - 43767949
Alignment:
Q  304 cctatattacaggggtaaagacctattaaccct 336  Q
    |||||| ||||||||||||||||||||||||||    
T  43767917 cctatactacaggggtaaagacctattaaccct 43767949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 260
Target Start/End: Complemental strand, 49872826 - 49872790
Alignment:
Q  224 gggggtaaaccaaaacaaaaatattttacacgggggt 260  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  49872826 gggggtaaatcaaaacaaaaatattttacaggggggt 49872790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 264
Target Start/End: Complemental strand, 36343269 - 36343226
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttacacgggggtaaat 264  Q
    |||||||||||| |||||||||||||||||||| ||||||||||    
T  36343269 taggggggtaaatcaaaacaaaaatattttacaggggggtaaat 36343226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 8620251 - 8620211
Alignment:
Q  87 agggttaatatatctttacacccctgtaatataggtcattt 127  Q
    |||||||||| |||||||| |||||||||||||||||||||    
T  8620251 agggttaatagatctttacccccctgtaatataggtcattt 8620211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 264
Target Start/End: Complemental strand, 2059307 - 2059265
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttacacgggggtaaat 264  Q
    |||||||||||| |||||||||||||||||||| ||||||||||    
T  2059307 taggggggtaaatcaaaacaaaaatattttaca-gggggtaaat 2059265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 260
Target Start/End: Complemental strand, 27794471 - 27794432
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttacacgggggt 260  Q
    |||||||||||| |||||||||||||||||||| ||||||    
T  27794471 taggggggtaaatcaaaacaaaaatattttacaggggggt 27794432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 260
Target Start/End: Original strand, 27794537 - 27794576
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttacacgggggt 260  Q
    |||||||||||| |||||||||||||||||||| ||||||    
T  27794537 taggggggtaaagcaaaacaaaaatattttacaggggggt 27794576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 264
Target Start/End: Original strand, 28724473 - 28724516
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttacacgggggtaaat 264  Q
    |||||||||||| |||||||||||||||||||| |||| |||||    
T  28724473 taggggggtaaatcaaaacaaaaatattttacagggggataaat 28724516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 264
Target Start/End: Original strand, 35167952 - 35167994
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttacacgggggtaaat 264  Q
    |||||||||||| |||||||||||||||||||| ||||||||||    
T  35167952 taggggggtaaatcaaaacaaaaatattttaca-gggggtaaat 35167994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 258
Target Start/End: Original strand, 2059373 - 2059407
Alignment:
Q  224 gggggtaaaccaaaacaaaaatattttacacgggg 258  Q
    ||||||||| |||||||||||||||||||||||||    
T  2059373 gggggtaaatcaaaacaaaaatattttacacgggg 2059407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 4646871 - 4646834
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttacacgggg 258  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  4646871 taggggggtaaatcaaaacaaaaatattttacaggggg 4646834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 337
Target Start/End: Complemental strand, 14625405 - 14625368
Alignment:
Q  301 tgtcctatattacagggg-taaagacctattaaccctt 337  Q
    |||||||||||||||||| |||||||||||||||||||    
T  14625405 tgtcctatattacagggggtaaagacctattaaccctt 14625368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 17864828 - 17864865
Alignment:
Q  79 ttatttatagggttaatatatctttacacccctgtaat 116  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  17864828 ttatttttagggttaatatgtctttacacccctgtaat 17864865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 28797420 - 28797380
Alignment:
Q  86 tagggttaatatatctttacacccctgtaatataggtcattt 127  Q
    ||||||||||| |||||||| |||||||||||||||||||||    
T  28797420 tagggttaataaatctttac-cccctgtaatataggtcattt 28797380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 264
Target Start/End: Original strand, 30434429 - 30434466
Alignment:
Q  227 ggtaaaccaaaacaaaaatattttacacgggggtaaat 264  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  30434429 ggtaaatcaaaacaaaaatattttacaagggggtaaat 30434466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 335
Target Start/End: Original strand, 30659569 - 30659598
Alignment:
Q  306 tatattacaggggtaaagacctattaaccc 335  Q
    ||||||||||||||||||||||||||||||    
T  30659569 tatattacaggggtaaagacctattaaccc 30659598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 42736612 - 42736653
Alignment:
Q  86 tagggttaatatatctttacacccctgtaatataggtcattt 127  Q
    |||||||||||  ||||||| |||||||||||||||||||||    
T  42736612 tagggttaataagtctttacccccctgtaatataggtcattt 42736653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 335
Target Start/End: Original strand, 46561541 - 46561570
Alignment:
Q  306 tatattacaggggtaaagacctattaaccc 335  Q
    ||||||||||||||||||||||||||||||    
T  46561541 tatattacaggggtaaagacctattaaccc 46561570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 5246557 - 5246513
Alignment:
Q  87 agggttaatatatctttacacccctgtaatataggtcattttcgg 131  Q
    |||||||||||  |||| ||||||||||||||| |||||||||||    
T  5246557 agggttaatattgcttttcacccctgtaatatatgtcattttcgg 5246513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 253
Target Start/End: Original strand, 5330598 - 5330630
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttaca 253  Q
    |||||||||||| ||||||||||||||||||||    
T  5330598 taggggggtaaatcaaaacaaaaatattttaca 5330630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 253
Target Start/End: Original strand, 5348313 - 5348345
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttaca 253  Q
    |||||||||||| ||||||||||||||||||||    
T  5348313 taggggggtaaatcaaaacaaaaatattttaca 5348345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 124
Target Start/End: Complemental strand, 33667694 - 33667654
Alignment:
Q  84 tatagggttaatatatctttacacccctgtaatataggtca 124  Q
    |||||||||||||   |||||||||||||||||||||||||    
T  33667694 tatagggttaataggcctttacacccctgtaatataggtca 33667654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 36343333 - 36343372
Alignment:
Q  224 gggggtaaaccaaaacaaaaatattttacacgggggtaaat 264  Q
    ||||||||| |||||||||||||||||||| ||||||||||    
T  36343333 gggggtaaatcaaaacaaaaatattttaca-gggggtaaat 36343372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 336
Target Start/End: Complemental strand, 50596031 - 50595999
Alignment:
Q  304 cctatattacaggggtaaagacctattaaccct 336  Q
    ||||||||||| |||||||||||||||||||||    
T  50596031 cctatattacaagggtaaagacctattaaccct 50595999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 338
Target Start/End: Complemental strand, 17441433 - 17441399
Alignment:
Q  304 cctatattacaggggtaaagacctattaaccctta 338  Q
    |||||||||||||||||||||||||||||||||||    
T  17441433 cctatattacaggggtaaagacctattaaccctta 17441399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 131
Target Start/End: Original strand, 8237635 - 8237682
Alignment:
Q  84 tatagggttaatatatctttacacccctgtaatataggtcattttcgg 131  Q
    |||||||||||||   |||||| |||||||||||||||||||||||||    
T  8237635 tatagggttaataatgctttacccccctgtaatataggtcattttcgg 8237682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 264
Target Start/End: Original strand, 33561902 - 33561944
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttacacgggggtaaat 264  Q
    |||||||||||| |||||||||||||||||||| ||||||||||    
T  33561902 taggggggtaaatcaaaacaaaaatattttaca-gggggtaaat 33561944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 334
Target Start/End: Complemental strand, 5953193 - 5953163
Alignment:
Q  304 cctatattacaggggtaaagacctattaacc 334  Q
    |||||||||||||||||||||||||||||||    
T  5953193 cctatattacaggggtaaagacctattaacc 5953163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 131
Target Start/End: Complemental strand, 31852049 - 31852007
Alignment:
Q  89 ggttaatatatctttacacccctgtaatataggtcattttcgg 131  Q
    ||||||||  ||||||| |||||||||||||||||||||||||    
T  31852049 ggttaataggtctttacccccctgtaatataggtcattttcgg 31852007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 4840716 - 4840687
Alignment:
Q  305 ctatattacaggggtaaagacctattaacc 334  Q
    ||||||||||||||||||||||||||||||    
T  4840716 ctatattacaggggtaaagacctattaacc 4840687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 5334756 - 5334719
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttacacgggg 258  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  5334756 taggggggtaaatcaaaacaaaaatattttacaagggg 5334719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 337
Target Start/End: Original strand, 30246088 - 30246121
Alignment:
Q  304 cctatattacaggggtaaagacctattaaccctt 337  Q
    |||||||||||||||||| |||||||||||||||    
T  30246088 cctatattacaggggtaacgacctattaaccctt 30246121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 347
Target Start/End: Complemental strand, 33483732 - 33483684
Alignment:
Q  301 tgtcctatattacaggg--gtaaagacctattaacccttatttatatat 347  Q
    |||||||||||||||||  |||||||||||||||||| ||| |||||||    
T  33483732 tgtcctatattacagggtggtaaagacctattaacccatatatatatat 33483684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 33561838 - 33561801
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttacacgggg 258  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  33561838 taggggggtaaatcaaaacaaaaatattttacatgggg 33561801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 253
Target Start/End: Original strand, 12321125 - 12321157
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttaca 253  Q
    |||||||||||| ||||||||||||||||||||    
T  12321125 taggggggtaaatcaaaacaaaaatattttaca 12321157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 253
Target Start/End: Original strand, 24062340 - 24062372
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttaca 253  Q
    |||||||||||| ||||||||||||||||||||    
T  24062340 taggggggtaaatcaaaacaaaaatattttaca 24062372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 338
Target Start/End: Complemental strand, 24234365 - 24234326
Alignment:
Q  301 tgtcctatattacagggg--taaagacctattaaccctta 338  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  24234365 tgtcctatattacaggggggtaaagacctattaaccctta 24234326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 131
Target Start/End: Complemental strand, 25400840 - 25400792
Alignment:
Q  83 ttatagggttaatatatctttacacccctgtaatataggtcattttcgg 131  Q
    |||| |||||||||  ||||||| ||| |||||||||||||||||||||    
T  25400840 ttattgggttaataggtctttacccccttgtaatataggtcattttcgg 25400792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 2127 - 2078
Alignment:
Q  78 attatttatagggttaatatatctttacacccctgtaatataggtcattt 127  Q
    |||||||| ||||||||||  ||||||| |||||||||||||||||||||    
T  2127 attatttaaagggttaataggtctttacccccctgtaatataggtcattt 2078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 253
Target Start/End: Original strand, 2002 - 2034
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttaca 253  Q
    |||||||||||| ||||||||||||||||||||    
T  2002 taggggggtaaatcaaaacaaaaatattttaca 2034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 304 - 337
Target Start/End: Original strand, 4105305 - 4105338
Alignment:
Q  304 cctatattacaggggtaaagacctattaaccctt 337  Q
    ||||||||||||||||||||||||||||||||||    
T  4105305 cctatattacaggggtaaagacctattaaccctt 4105338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 304 - 337
Target Start/End: Original strand, 40652679 - 40652712
Alignment:
Q  304 cctatattacaggggtaaagacctattaaccctt 337  Q
    ||||||||||||||||||||||||||||||||||    
T  40652679 cctatattacaggggtaaagacctattaaccctt 40652712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 304 - 337
Target Start/End: Original strand, 43945410 - 43945443
Alignment:
Q  304 cctatattacaggggtaaagacctattaaccctt 337  Q
    ||||||||||||||||||||||||||||||||||    
T  43945410 cctatattacaggggtaaagacctattaaccctt 43945443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 27543410 - 27543454
Alignment:
Q  87 agggttaatatatctttacacccctgtaatataggtcattttcgg 131  Q
    ||||||||||  ||||||| |||||||||||||||||||||||||    
T  27543410 agggttaataggtctttacccccctgtaatataggtcattttcgg 27543454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 264
Target Start/End: Original strand, 25601892 - 25601934
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttacacgggggtaaat 264  Q
    |||||||||||| |||||||||||||||||||| ||||||||||    
T  25601892 taggggggtaaatcaaaacaaaaatattttaca-gggggtaaat 25601934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 335
Target Start/End: Complemental strand, 39808680 - 39808649
Alignment:
Q  304 cctatattacaggggtaaagacctattaaccc 335  Q
    ||||||||||||||||||||||||||||||||    
T  39808680 cctatattacaggggtaaagacctattaaccc 39808649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 334
Target Start/End: Original strand, 38500539 - 38500569
Alignment:
Q  304 cctatattacaggggtaaagacctattaacc 334  Q
    |||||||||||||||||||||||||||||||    
T  38500539 cctatattacaggggtaaagacctattaacc 38500569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 7988967 - 7989004
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttacacgggg 258  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  7988967 taggggggtaaatcaaaacaaaaatattttacaggggg 7989004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 131
Target Start/End: Complemental strand, 14329663 - 14329615
Alignment:
Q  82 tttatagggttaatatatctttacacccctgtaatataggtcattttcgg 131  Q
    |||| ||||||||||  ||||||| |||||||||||||||||||||||||    
T  14329663 tttacagggttaataggtctttac-cccctgtaatataggtcattttcgg 14329615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 337
Target Start/End: Original strand, 26447608 - 26447641
Alignment:
Q  304 cctatattacaggggtaaagacctattaaccctt 337  Q
    ||||||||||||||||||||||||||||| ||||    
T  26447608 cctatattacaggggtaaagacctattaatcctt 26447641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 27198319 - 27198356
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttacacgggg 258  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  27198319 taggggggtaaatcaaaacaaaaatattttacaggggg 27198356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 333
Target Start/End: Complemental strand, 34374260 - 34374231
Alignment:
Q  304 cctatattacaggggtaaagacctattaac 333  Q
    ||||||||||||||||||||||||||||||    
T  34374260 cctatattacaggggtaaagacctattaac 34374231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 3912538 - 3912495
Alignment:
Q  87 agggttaatatatctttacacccctgtaatataggtcattttcgg 131  Q
    ||||||||||  ||||||| |||||||||||||||||||||||||    
T  3912538 agggttaataagtctttac-cccctgtaatataggtcattttcgg 3912495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 253
Target Start/End: Complemental strand, 8307976 - 8307944
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttaca 253  Q
    |||||||||||| ||||||||||||||||||||    
T  8307976 taggggggtaaatcaaaacaaaaatattttaca 8307944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 264
Target Start/End: Complemental strand, 12330443 - 12330404
Alignment:
Q  224 gggggtaaaccaaaacaaaaatattttacacgggggtaaat 264  Q
    ||||||||| |||||||||||||||||||| ||||||||||    
T  12330443 gggggtaaatcaaaacaaaaatattttaca-gggggtaaat 12330404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 253
Target Start/End: Original strand, 14329544 - 14329576
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttaca 253  Q
    |||||||||||| ||||||||||||||||||||    
T  14329544 taggggggtaaatcaaaacaaaaatattttaca 14329576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 15152235 - 15152275
Alignment:
Q  224 gggggtaaaccaaaacaaaaatattttacacgggggtaaat 264  Q
    |||||||  ||||||||||||||||||||| ||||||||||    
T  15152235 gggggtattccaaaacaaaaatattttacaagggggtaaat 15152275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 16093608 - 16093648
Alignment:
Q  88 gggttaatatatctttacacccctgtaatataggtcatttt 128  Q
    |||||||||  ||||||||||| ||||||||||||||||||    
T  16093608 gggttaataggtctttacacccttgtaatataggtcatttt 16093648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 253
Target Start/End: Complemental strand, 25601827 - 25601795
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttaca 253  Q
    |||||||||||| ||||||||||||||||||||    
T  25601827 taggggggtaaatcaaaacaaaaatattttaca 25601795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 253
Target Start/End: Original strand, 43945344 - 43945376
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttaca 253  Q
    |||||||||||| ||||||||||||||||||||    
T  43945344 taggggggtaaatcaaaacaaaaatattttaca 43945376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 336
Target Start/End: Original strand, 16902362 - 16902394
Alignment:
Q  304 cctatattacaggggtaaagacctattaaccct 336  Q
    |||||||||||||||||||||||||||||||||    
T  16902362 cctatattacaggggtaaagacctattaaccct 16902394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 264
Target Start/End: Original strand, 13286808 - 13286851
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttacacgggggtaaat 264  Q
    |||||||||||| |||||||||||||||||||| |||| |||||    
T  13286808 taggggggtaaatcaaaacaaaaatattttacagggggttaaat 13286851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 260
Target Start/End: Original strand, 24205295 - 24205334
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttacacgggggt 260  Q
    |||||||||||| |||||||||||||||||||| ||||||    
T  24205295 taggggggtaaatcaaaacaaaaatattttacaggggggt 24205334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 260
Target Start/End: Original strand, 24206813 - 24206852
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttacacgggggt 260  Q
    |||||||||||| |||||||||||||||||||| ||||||    
T  24206813 taggggggtaaatcaaaacaaaaatattttacaggggggt 24206852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 260
Target Start/End: Complemental strand, 31186782 - 31186743
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttacacgggggt 260  Q
    |||||||||||| |||||||||||||||||||| ||||||    
T  31186782 taggggggtaaatcaaaacaaaaatattttacaggggggt 31186743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 339
Target Start/End: Original strand, 44414103 - 44414138
Alignment:
Q  304 cctatattacaggggtaaagacctattaacccttat 339  Q
    ||||||||||||||||||||||||||||||| ||||    
T  44414103 cctatattacaggggtaaagacctattaacctttat 44414138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 131
Target Start/End: Original strand, 44568849 - 44568890
Alignment:
Q  89 ggttaatatatctttacacccctgtaatataggtcattttcgg 131  Q
    |||||||| |||||||| |||||||||||||||||||||||||    
T  44568849 ggttaatagatctttac-cccctgtaatataggtcattttcgg 44568890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 334
Target Start/End: Complemental strand, 48104540 - 48104510
Alignment:
Q  304 cctatattacaggggtaaagacctattaacc 334  Q
    |||||||||||||||||||||||||||||||    
T  48104540 cctatattacaggggtaaagacctattaacc 48104510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 12180895 - 12180850
Alignment:
Q  85 atagggttaatatatctttacacccctgtaatataggtcattttcg 130  Q
    ||||||||||||  ||||||  ||||||||||||||||||||||||    
T  12180895 atagggttaataggtctttatccccctgtaatataggtcattttcg 12180850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 13286933 - 13286884
Alignment:
Q  78 attatttatagggttaatatatctttacacccctgtaatataggtcattt 127  Q
    ||||||| |||||||||||  ||||||| ||| |||||||||||||||||    
T  13286933 attatttttagggttaataggtctttacccccttgtaatataggtcattt 13286884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 15037341 - 15037304
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttacacgggg 258  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  15037341 taggggggtaaatcaaaacaaaaatattttacaggggg 15037304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 15037465 - 15037424
Alignment:
Q  86 tagggttaatatatctttacacccctgtaatataggtcattt 127  Q
    |||||||||||  ||||||| |||||||||||||||||||||    
T  15037465 tagggttaataggtctttacccccctgtaatataggtcattt 15037424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 264
Target Start/End: Original strand, 19410698 - 19410738
Alignment:
Q  223 ggggggtaaaccaaaacaaaaatattttacacgggggtaaat 264  Q
    |||||||||| |||||||||||||||||||| ||||||||||    
T  19410698 ggggggtaaatcaaaacaaaaatattttaca-gggggtaaat 19410738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 21811414 - 21811455
Alignment:
Q  87 agggttaatatatctttacacccctgtaatataggtcatttt 128  Q
    |||||||||| |||||||  ||||||||||||||||||||||    
T  21811414 agggttaatagatctttatccccctgtaatataggtcatttt 21811455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 24845632 - 24845680
Alignment:
Q  82 tttatagggttaatatatctttacacccctgtaatataggtcattttcgg 131  Q
    |||||||||||||||  ||||||| | |||||||||||||||||||||||    
T  24845632 tttatagggttaataggtctttac-ctcctgtaatataggtcattttcgg 24845680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 37079803 - 37079848
Alignment:
Q  86 tagggttaatatatctttacacccctgtaatataggtcattttcgg 131  Q
    |||||||||||   |||| |||||||||||||||||||||||||||    
T  37079803 tagggttaatagtgcttttcacccctgtaatataggtcattttcgg 37079848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 253
Target Start/End: Complemental strand, 1693331 - 1693299
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttaca 253  Q
    |||||||||||| ||||||||||||||||||||    
T  1693331 taggggggtaaatcaaaacaaaaatattttaca 1693299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 5766630 - 5766676
Alignment:
Q  79 ttatttatagggttaatatatctttacacccctgtaatataggtcattt 127  Q
    |||||||| |||||||||| ||||||| |||||||||||||||||||||    
T  5766630 ttatttat-gggttaatatgtctttac-cccctgtaatataggtcattt 5766676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 12814593 - 12814633
Alignment:
Q  87 agggttaatatatctttacacccctgtaatataggtcattt 127  Q
    ||||||||||  ||||||| |||||||||||||||||||||    
T  12814593 agggttaataggtctttactcccctgtaatataggtcattt 12814633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 260
Target Start/End: Complemental strand, 13279295 - 13279259
Alignment:
Q  224 gggggtaaaccaaaacaaaaatattttacacgggggt 260  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  13279295 gggggtaaatcaaaacaaaaatattttacaggggggt 13279259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 14079056 - 14079012
Alignment:
Q  86 tagggttaatatatctttacacccctgtaatataggtcattttcg 130  Q
    |||||||||||  ||||||| ||| ||||||||||||||||||||    
T  14079056 tagggttaataggtctttacccccatgtaatataggtcattttcg 14079012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 14389084 - 14389040
Alignment:
Q  86 tagggttaatatatctttacacccctgtaatataggtcattttcg 130  Q
    |||||||||||  ||||||| ||| ||||||||||||||||||||    
T  14389084 tagggttaataggtctttacccccatgtaatataggtcattttcg 14389040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 253
Target Start/End: Complemental strand, 19410624 - 19410592
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttaca 253  Q
    |||||||||||| ||||||||||||||||||||    
T  19410624 taggggggtaaatcaaaacaaaaatattttaca 19410592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 24204823 - 24204855
Alignment:
Q  99 tctttacacccctgtaatataggtcattttcgg 131  Q
    ||||||| |||||||||||||||||||||||||    
T  24204823 tctttacccccctgtaatataggtcattttcgg 24204855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 253
Target Start/End: Original strand, 31186848 - 31186880
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttaca 253  Q
    |||||||||||| ||||||||||||||||||||    
T  31186848 taggggggtaaatcaaaacaaaaatattttaca 31186880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 38192961 - 38193001
Alignment:
Q  87 agggttaatatatctttacacccctgtaatataggtcattt 127  Q
    ||||||||||  ||||||| |||||||||||||||||||||    
T  38192961 agggttaataggtctttacccccctgtaatataggtcattt 38193001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 264
Target Start/End: Complemental strand, 342530 - 342491
Alignment:
Q  225 ggggtaaaccaaaacaaaaatattttacacgggggtaaat 264  Q
    ||||||| |||||| |||||||||||||||||||||||||    
T  342530 ggggtaatccaaaaaaaaaatattttacacgggggtaaat 342491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0809 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 334
Target Start/End: Complemental strand, 3800 - 3770
Alignment:
Q  304 cctatattacaggggtaaagacctattaacc 334  Q
    |||||||||||||||||||||||||||||||    
T  3800 cctatattacaggggtaaagacctattaacc 3770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 258
Target Start/End: Complemental strand, 38159 - 38125
Alignment:
Q  224 gggggtaaaccaaaacaaaaatattttacacgggg 258  Q
    ||||||||| |||||||||||||||||||||||||    
T  38159 gggggtaaatcaaaacaaaaatattttacacgggg 38125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0769 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 3912 - 3953
Alignment:
Q  86 tagggttaatatatctttacacccctgtaatataggtcattt 127  Q
    |||||||||||  ||||||| |||||||||||||||||||||    
T  3912 tagggttaataggtctttacccccctgtaatataggtcattt 3953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 128
Target Start/End: Complemental strand, 150288 - 150243
Alignment:
Q  83 ttatagggttaatatatctttacacccctgtaatataggtcatttt 128  Q
    |||||||||||||    |||||||||||||||||||||||||||||    
T  150288 ttatagggttaatggtgctttacacccctgtaatataggtcatttt 150243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0727 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0727
Description:

Target: scaffold0727; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 264
Target Start/End: Complemental strand, 942 - 903
Alignment:
Q  224 gggggtaaaccaaaacaaaaatattttacacgggggtaaat 264  Q
    ||||||||| |||||||||||||||||||| ||||||||||    
T  942 gggggtaaatcaaaacaaaaatattttaca-gggggtaaat 903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 253
Target Start/End: Original strand, 8039 - 8071
Alignment:
Q  221 taggggggtaaaccaaaacaaaaatattttaca 253  Q
    |||||||||||| ||||||||||||||||||||    
T  8039 taggggggtaaatcaaaacaaaaatattttaca 8071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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