View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0638_low_10 (Length: 308)
Name: NF0638_low_10
Description: NF0638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0638_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 40 - 297
Target Start/End: Original strand, 50979632 - 50979878
Alignment:
| Q |
40 |
agggtacgttttatgccttgaaattttccttttatattgtcttatcatttggcttatctggtttttcaggcagcacactatctcaaaattaaggaatgac |
139 |
Q |
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| T |
50979632 |
agggtacgttttatgccttgaaattttccttttatattgtctta------------tctggtttttcaggcagcacactatcttaaaattaaggaatgac |
50979719 |
T |
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| Q |
140 |
cccggaacagatactccggtatcaagatctcaagagtgatatgactcctcaggaagaagaggatgtccatttgagaatcatacataaacttaagcttgtc |
239 |
Q |
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| T |
50979720 |
cccggaacagatactccggtatcaagatctcaagagtgatatgactcctcaggaagaagaggatgtccatttgagaatcatacataaacttaagcttgtc |
50979819 |
T |
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| Q |
240 |
cnnnnnnngttc-ttgtttaaaattttctaaactcctatcattgtatacatttattcat |
297 |
Q |
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| T |
50979820 |
ctttttttgttctttgtttaaaattttctaaactcctatcattgtatacatttattcat |
50979878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 15855804 - 15855865
Alignment:
| Q |
69 |
ttttatattgtcttatcatttggcttatctggtttttcaggcagcacactatctcaaaatta |
130 |
Q |
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| T |
15855804 |
ttttatattgtcatataaattggcttcactggtttttcaggcagcacactatctcaaaatta |
15855865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 202
Target Start/End: Original strand, 50964504 - 50964575
Alignment:
| Q |
131 |
aggaatgaccccggaacagatactccggtatcaagatctcaagagtgatatgactcctcaggaagaagagga |
202 |
Q |
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| T |
50964504 |
aggaaagaccccagaaaagatacaccggtattacaatctcaagaatgatatgactcctcaggaagaagagga |
50964575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 130
Target Start/End: Original strand, 50948347 - 50948400
Alignment:
| Q |
77 |
tgtcttatcatttggctta-tctggtttttcaggcagcacactatctcaaaatta |
130 |
Q |
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| T |
50948347 |
tgtcttatcatttggctttctctggtttt-caggcagcacactatctcaaaatta |
50948400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 130
Target Start/End: Original strand, 33631627 - 33631681
Alignment:
| Q |
77 |
tgtcttatcatttggctta-tctggtttttcaggcagcacactatctcaaaatta |
130 |
Q |
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| T |
33631627 |
tgtcttatcatttgactttctctggtttttcaggcagcacactatctcaaaatta |
33631681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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