View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0638_low_16 (Length: 240)
Name: NF0638_low_16
Description: NF0638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0638_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 39931220 - 39930986
Alignment:
| Q |
1 |
ttatatttaattttatactgttgaataaactataggtatgatagcggggatgtcacttggaagcaccggaattgttggaaacttgattgtatatcttaca |
100 |
Q |
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| T |
39931220 |
ttatatttaattttatactgttgaataaactataggtatgatagcggggatgtcacttggaagcaccggaattgttggaaacttgattgtatatcttaca |
39931121 |
T |
|
| Q |
101 |
agagaattcaatataaagagcatcactgcaactcaaatttcaaatgttgtcgttggaagcaccagtatatttccagtagtggccgcaatcgttgctgatt |
200 |
Q |
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| T |
39931120 |
agagaattcaatataaagagcatcactgcaactcaaatttcaaatgttgtcgttggaagcaccagtatatttccagtagtggccgcaatcgttgctgatt |
39931021 |
T |
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| Q |
201 |
ctttctttggttctttctatgttgcctttgcttct |
235 |
Q |
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| T |
39931020 |
ctttctttggttctttctatgttgcctttgcttct |
39930986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 31 - 235
Target Start/End: Original strand, 39691027 - 39691231
Alignment:
| Q |
31 |
tataggtatgatagcggggatgtcacttggaagcaccggaattgttggaaacttgattgtatatcttacaagagaattcaatataaagagcatcactgca |
130 |
Q |
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| T |
39691027 |
tataggtatgataacggggttgtcacttgcaagcactggaattgttggaaacttgattgtatatcttataagtgaattcaatatcaagagcatcaatgca |
39691126 |
T |
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| Q |
131 |
actcaaatttcaaatgttgtcgttggaagcaccagtatatttccagtagtggccgcaatcgttgctgattctttctttggttctttctatgttgcctttg |
230 |
Q |
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| T |
39691127 |
gctcagattgtaaacgttgttgttggaagcacaagtctatttccacttgttgcagcaatccttgctgactctttctttggctcattcttagttgcctttg |
39691226 |
T |
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| Q |
231 |
cttct |
235 |
Q |
| |
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||||| |
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| T |
39691227 |
cttct |
39691231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 39700204 - 39700414
Alignment:
| Q |
19 |
tgttgaataaactataggtatgatagcggggatgtcacttggaagcaccggaattgttggaaacttgattgtatatcttacaagagaattcaatataaag |
118 |
Q |
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|||||| |||| |||||||||| |||||||| ||||||| | ||| | ||||||| || || |||||||||||||||| || |||||||||||||||| |
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| T |
39700204 |
tgttgattaaattataggtatggtagcggggttgtcactagcaagtgcaggaattggggggaatttgattgtatatcttataaaagaattcaatataaag |
39700303 |
T |
|
| Q |
119 |
agcatcactgcaactcaaatttcaaatgttgtcgttggaagcaccagtatatttccagtagtggccgcaatcgttgctgattctttctttggttctttct |
218 |
Q |
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||||||| |||| |||||||| ||| ||||| ||||||||| ||| | |||| ||| | | || |||||| ||||||||||||||||||| ||||||| |
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| T |
39700304 |
agcatcaatgcagctcaaattgtaaacgttgttgttggaagctccaatctattaccaatcattgctgcaatccttgctgattctttctttggctctttct |
39700403 |
T |
|
| Q |
219 |
atgttgccttt |
229 |
Q |
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|||||||||| |
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| T |
39700404 |
ctgttgccttt |
39700414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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