View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0638_low_3 (Length: 504)
Name: NF0638_low_3
Description: NF0638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0638_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 431; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 9 - 475
Target Start/End: Complemental strand, 38752923 - 38752457
Alignment:
| Q |
9 |
agcagagagaacaatcaaataactaattaatagactcattggatcttattatagtttatcctacaaaaactcattgtttgtactgacatggtcatatgct |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38752923 |
agcagagagaacaatcaaataactaattaatagactcattggatcttattatagtttatcctacaaaaactcattgtttgtactgacatggtcatatgct |
38752824 |
T |
|
| Q |
109 |
tcttaaagttagtaaactatttagatagccaaaagaagagttacttaaatgatatgtcatatatttttgtttcatagagtaaaattataatgtgaaaatg |
208 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38752823 |
tcttaaagttagtaaactatttagatagccaaaagaagagttacttaaatgatatgtcatatatttttgtttcatagagtaaaattataatgtgaaaatg |
38752724 |
T |
|
| Q |
209 |
ttgggtatgactcatagtttaccggtaaatagataagtttattgatcagagataatcttataaattggactgtagtatttaaacataagttgtctactga |
308 |
Q |
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|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
38752723 |
ttgggtatgactcatagtttaccggtaaatagacaagtttattgatcagagataatcttgtaaattggactgtagtatttaaacacaagttgtctactga |
38752624 |
T |
|
| Q |
309 |
tcagatataatcatgtaaattggaccgtagtatttaaacaaaatttgtaatatatatgcaatcctaaatttgattaatggaaaaatattacaaccacttt |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
38752623 |
tcagatataatcatgtaaattggaccgtagtatttaaataaaatttgtaatatatatgcaatccgaaatttgactaatggaaaaatattacaaccacttt |
38752524 |
T |
|
| Q |
409 |
atagtcggatacgtaggcacaattggctgaactctctaatcaaacctagtgtattctttgtgaataa |
475 |
Q |
| |
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| T |
38752523 |
gtagtcggatacgtaggcacaattggccgaactctctaatcaaacctagtgtattcattgtgaataa |
38752457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 361
Target Start/End: Complemental strand, 10842682 - 10842645
Alignment:
| Q |
324 |
taaattggaccgtagtatttaaacaaaatttgtaatat |
361 |
Q |
| |
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||||||||||||||||||||||||| || ||||||||| |
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| T |
10842682 |
taaattggaccgtagtatttaaacacaaattgtaatat |
10842645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 38779442 - 38779482
Alignment:
| Q |
261 |
taatcttataaattggactgtagtatttaaacataagttgt |
301 |
Q |
| |
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||||||| |||| |||||||||||||||||||| ||||||| |
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| T |
38779442 |
taatcttgtaaactggactgtagtatttaaacacaagttgt |
38779482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 358
Target Start/End: Complemental strand, 34655396 - 34655354
Alignment:
| Q |
316 |
taatcatgtaaattggaccgtagtatttaaacaaaatttgtaa |
358 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
34655396 |
taatcatgtaaattggaccgtagcatttaaagtaaatttgtaa |
34655354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 361
Target Start/End: Complemental strand, 37410071 - 37410026
Alignment:
| Q |
316 |
taatcatgtaaattggaccgtagtatttaaacaaaatttgtaatat |
361 |
Q |
| |
|
||||| ||||||||||||||||||||||||| | || ||||||||| |
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|
| T |
37410071 |
taatcttgtaaattggaccgtagtatttaaaaacaaattgtaatat |
37410026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 4999955 - 4999915
Alignment:
| Q |
261 |
taatcttataaattggactgtagtatttaaacataagttgt |
301 |
Q |
| |
|
||||||| |||||||||| |||||||||||| ||||||||| |
|
|
| T |
4999955 |
taatcttgtaaattggaccgtagtatttaaatataagttgt |
4999915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 34358054 - 34358094
Alignment:
| Q |
258 |
agataatcttataaattggactgtagtatttaaacataagt |
298 |
Q |
| |
|
|||||||||| ||||||| ||||||| |||||||||||||| |
|
|
| T |
34358054 |
agataatcttgtaaattgaactgtagcatttaaacataagt |
34358094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 291
Target Start/End: Original strand, 37855001 - 37855033
Alignment:
| Q |
259 |
gataatcttataaattggactgtagtatttaaa |
291 |
Q |
| |
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|||||||||||||||||||| |||||||||||| |
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|
| T |
37855001 |
gataatcttataaattggaccgtagtatttaaa |
37855033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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