View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0638_low_5 (Length: 430)
Name: NF0638_low_5
Description: NF0638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0638_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 95 - 422
Target Start/End: Original strand, 43093057 - 43093384
Alignment:
| Q |
95 |
actcaaaatgtttgatatatatgtcaagagatcaaccatatgtatataaacgataagaggctaaatgagacctgaatttcttgccaagaaaaagaatctc |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
43093057 |
actcaaaatgtttgatatatatgtcaagagatcaaccatatgtatataaacgataagaggctaaatgagacctgaatttctttccaagaaaaagaatctc |
43093156 |
T |
|
| Q |
195 |
cagtagaatagtacacggaattattgccaactttgtcatctgaatgcatatgtaaaagagtctgttaaaaaattcttgataaaaatggccaaacaacaac |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
43093157 |
cagtagaatagtacacggaattattgccaactttgtcatctgaatgcatatgtaaaagagtctgttaaaaaattattgataaaaatgcccaaacaacaac |
43093256 |
T |
|
| Q |
295 |
aataaaggctttgaaaaatagaacacgtacnnnnnnntacctgatagaatccaacagaattgaaacccagactcaaatttaacaacccaatcgagattcc |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43093257 |
aataaaggctttgaaaaatagaacacgtacaaaaaaacacctgatagaatccaacagaattgaaacccagactcaaatttaacaacccaatcgagattcc |
43093356 |
T |
|
| Q |
395 |
atttagaattccaaatcccatctctgct |
422 |
Q |
| |
|
|||||||||||||||||||||| ||||| |
|
|
| T |
43093357 |
atttagaattccaaatcccatcactgct |
43093384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 412
Target Start/End: Original strand, 43085348 - 43085421
Alignment:
| Q |
339 |
tagaatccaacagaattgaaacccagactcaaatttaacaacccaatcgagattccatttagaattccaaatcc |
412 |
Q |
| |
|
||||| || ||||||||||| || || ||||||||||| | ||||| ||||||||||||| ||| |||||||| |
|
|
| T |
43085348 |
tagaagccgacagaattgaaccctaggctcaaatttaaaagtccaattgagattccatttaaaatcccaaatcc |
43085421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2935 times since January 2019
Visitors: 4019